RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 H1FX-AS1Q4G0G2 97 aa7.85□□□□□ -1.15
USP28-214ENST00000545540 RYR3Q15413 4870 aa7.85□□□□□ -1.15
USP28-214ENST00000545540 KRTAP10-8P60410 259 aa7.84□□□□□ -1.15
USP28-214ENST00000545540 LINC01554Q52M75 96 aa7.84□□□□□ -1.15
USP28-214ENST00000545540 COX6B2Q6YFQ2 88 aa7.84□□□□□ -1.15
USP28-214ENST00000545540 KRTAP17-1Q9BYP8 105 aa7.84□□□□□ -1.15
USP28-214ENST00000545540 A0A0D9SG42 100 aa7.83□□□□□ -1.16
USP28-214ENST00000545540 Q5VSD8 79 aa7.8□□□□□ -1.16
USP28-214ENST00000545540 LRP2P98164 4655 aa7.77□□□□□ -1.16
USP28-214ENST00000545540 KRTAP13-4Q3LI77 160 aa7.72□□□□□ -1.17
USP28-214ENST00000545540 KRTAP3-3Q9BYR6 98 aa7.72□□□□□ -1.17
USP28-214ENST00000545540 XP32Q5T750 250 aa7.71□□□□□ -1.17
USP28-214ENST00000545540 RYR1P21817 5038 aa7.7□□□□□ -1.18
USP28-214ENST00000545540 KRTAP10-6P60371 365 aaPredicted RBP7.67□□□□□ -1.18
USP28-214ENST00000545540 P0C880 135 aa7.66□□□□□ -1.18
USP28-214ENST00000545540 RPL37P61927 97 aaKnown RBP7.66□□□□□ -1.18
USP28-214ENST00000545540 ABCA13Q86UQ4 5058 aa7.63□□□□□ -1.19
USP28-214ENST00000545540 S4R3F8 94 aa7.62□□□□□ -1.19
USP28-214ENST00000545540 KRTAP25-1Q3LHN0 102 aa7.61□□□□□ -1.19
USP28-214ENST00000545540 EPPK1P58107 5090 aaKnown RBP7.61□□□□□ -1.19
USP28-214ENST00000545540 K7ERS5 55 aa7.6□□□□□ -1.19
USP28-214ENST00000545540 KRTAP3-2Q9BYR7 98 aa7.6□□□□□ -1.19
USP28-214ENST00000545540 MT1HL1P0DM35 61 aa7.53□□□□□ -1.2
USP28-214ENST00000545540 C10orf95Q9H7T3 257 aa7.53□□□□□ -1.2
USP28-214ENST00000545540 SPINT4Q6UDR6 99 aa7.5□□□□□ -1.21
USP28-214ENST00000545540 ROMO1P60602 79 aa7.47□□□□□ -1.21
USP28-214ENST00000545540 KRTAP12-2P59991 146 aa7.46□□□□□ -1.22
USP28-214ENST00000545540 KRTAP4-5Q9BYR2 181 aa7.44□□□□□ -1.22
USP28-214ENST00000545540 TPRXLQ17RH7 258 aa7.42□□□□□ -1.22
USP28-214ENST00000545540 MUC2Q02817 5179 aa7.41□□□□□ -1.22
USP28-214ENST00000545540 H3BS24 57 aa7.34□□□□□ -1.23
USP28-214ENST00000545540 KRTAP12-1P59990 96 aa7.31□□□□□ -1.24
USP28-214ENST00000545540 M0QZ58 72 aa7.23□□□□□ -1.25
USP28-214ENST00000545540 LORP23490 312 aaPredicted RBP7.21□□□□□ -1.25
USP28-214ENST00000545540 KRTAP4-1Q9BYQ7 146 aa7.18□□□□□ -1.26
USP28-214ENST00000545540 R4GN34 69 aa7.16□□□□□ -1.26
USP28-214ENST00000545540 HERC2O95714 4834 aa7.16□□□□□ -1.26
USP28-214ENST00000545540 MUC17Q685J3 4493 aa7.13□□□□□ -1.27
USP28-214ENST00000545540 J3QL48 77 aa7.08□□□□□ -1.28
USP28-214ENST00000545540 HERC1Q15751 4861 aa7.02□□□□□ -1.29
USP28-214ENST00000545540 FAT4Q6V0I7 4981 aa7.01□□□□□ -1.29
USP28-214ENST00000545540 SEC61BP60468 96 aaKnown RBP7□□□□□ -1.29
USP28-214ENST00000545540 NDUFAF8A1L188 74 aa7□□□□□ -1.29
USP28-214ENST00000545540 KRTAP15-1Q3LI76 137 aa6.94□□□□□ -1.3
USP28-214ENST00000545540 PCLOQ9Y6V0 5065 aa6.92□□□□□ -1.3
USP28-214ENST00000545540 CAMK2N1Q7Z7J9 78 aa6.85□□□□□ -1.31
USP28-214ENST00000545540 RNF213Q63HN8 5207 aa6.85□□□□□ -1.31
USP28-214ENST00000545540 KRTAP19-2Q3LHN2 52 aa6.84□□□□□ -1.31
USP28-214ENST00000545540 FLGP20930 4061 aaPredicted RBP6.74□□□□□ -1.33
USP28-214ENST00000545540 PLAC4Q8WY50 150 aa6.69□□□□□ -1.34
USP28-214ENST00000545540 BIRC6Q9NR09 4857 aa6.69□□□□□ -1.34
USP28-214ENST00000545540 UBR4Q5T4S7 5183 aa6.65□□□□□ -1.34
USP28-214ENST00000545540 HMCN2Q8NDA2 5059 aa6.64□□□□□ -1.35
USP28-214ENST00000545540 M0R2T5 61 aa6.56□□□□□ -1.36
USP28-214ENST00000545540 LCE2CQ5TA81 110 aa6.47□□□□□ -1.37
USP28-214ENST00000545540 TNP1P09430 55 aa6.45□□□□□ -1.38
USP28-214ENST00000545540 PP632Q6XCG6 107 aa6.39□□□□□ -1.39
USP28-214ENST00000545540 KRTAP19-1Q8IUB9 90 aa6.37□□□□□ -1.39
USP28-214ENST00000545540 LUZP6Q538Z0 58 aa6.37□□□□□ -1.39
USP28-214ENST00000545540 KRTAP10-10P60014 251 aa6.35□□□□□ -1.39
USP28-214ENST00000545540 MT1HP80294 61 aa6.31□□□□□ -1.4
USP28-214ENST00000545540 MT1FP04733 61 aa6.29□□□□□ -1.4
USP28-214ENST00000545540 SPRR2GQ9BYE4 73 aa6.25□□□□□ -1.41
USP28-214ENST00000545540 MT2AP02795 61 aa6.24□□□□□ -1.41
USP28-214ENST00000545540 LCE3AQ5TA76 89 aa6.24□□□□□ -1.41
USP28-214ENST00000545540 USH2AO75445 5202 aa6.19□□□□□ -1.42
USP28-214ENST00000545540 KRTAP9-8Q9BYQ0 159 aa6.16□□□□□ -1.42
USP28-214ENST00000545540 KMT2DO14686 5537 aa6.09□□□□□ -1.43
USP28-214ENST00000545540 MT1BP07438 61 aa6.02□□□□□ -1.45
USP28-214ENST00000545540 KRTAP23-1A1A580 65 aa6□□□□□ -1.45
USP28-214ENST00000545540 KRTAP10-5P60370 271 aa6□□□□□ -1.45
USP28-214ENST00000545540 MT1XP80297 61 aa6□□□□□ -1.45
USP28-214ENST00000545540 SPRR5A0A1B0GTR4 108 aa5.99□□□□□ -1.45
USP28-214ENST00000545540 A0A0A0MQY5 61 aa5.99□□□□□ -1.45
USP28-214ENST00000545540 KRTAP10-7P60409 375 aaPredicted RBP5.96□□□□□ -1.46
USP28-214ENST00000545540 KRTAP19-8Q3LI54 63 aa5.92□□□□□ -1.46
USP28-214ENST00000545540 KRTAP10-12P60413 245 aa5.89□□□□□ -1.47
USP28-214ENST00000545540 KRTAP9-3Q9BYQ3 159 aa5.87□□□□□ -1.47
USP28-214ENST00000545540 KRTAP12-3P60328 96 aa5.86□□□□□ -1.47
USP28-214ENST00000545540 KRTAP8-1Q8IUC2 63 aa5.86□□□□□ -1.47
USP28-214ENST00000545540 FSIP2Q5CZC0 6907 aa5.83□□□□□ -1.48
USP28-214ENST00000545540 LCE2BO14633 110 aa5.75□□□□□ -1.49
USP28-214ENST00000545540 KRTAP4-8A0A0G2JLE6 195 aa5.71□□□□□ -1.49
USP28-214ENST00000545540 KRTAP4-8Q9BYQ9 185 aa5.71□□□□□ -1.49
USP28-214ENST00000545540 KRTAP19-5Q3LI72 72 aa5.68□□□□□ -1.5
USP28-214ENST00000545540 PRO2289Q9P1D8 64 aa5.63□□□□□ -1.51
USP28-214ENST00000545540 KRTAP4-7Q9BYR0 210 aa5.54□□□□□ -1.52
USP28-214ENST00000545540 LCE3CQ5T5A8 94 aa5.48□□□□□ -1.53
USP28-214ENST00000545540 KRTAP9-6A8MVA2 160 aa5.44□□□□□ -1.54
USP28-214ENST00000545540 LCE2AQ5TA79 106 aaPredicted RBP5.43□□□□□ -1.54
USP28-214ENST00000545540 SSPOA2VEC9 5147 aa5.41□□□□□ -1.54
USP28-214ENST00000545540 DSTQ03001 7570 aaKnown RBP5.36□□□□□ -1.55
USP28-214ENST00000545540 KRTAP19-7Q3SYF9 63 aa5.34□□□□□ -1.55
USP28-214ENST00000545540 MUC12Q9UKN1 5478 aa5.32□□□□□ -1.56
USP28-214ENST00000545540 FCGBPQ9Y6R7 5405 aaPredicted RBP5.28□□□□□ -1.56
USP28-214ENST00000545540 INE1O15225 51 aa5.24□□□□□ -1.57
USP28-214ENST00000545540 KRTAP4-3Q9BYR4 195 aa5.18□□□□□ -1.58
USP28-214ENST00000545540 MT1LQ93083 61 aa5.16□□□□□ -1.58
USP28-214ENST00000545540 LOC100996750A0A140TA64 210 aa5.16□□□□□ -1.58
USP28-214ENST00000545540 MT1EP04732 61 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms