RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 OCR1Q9BZK8 76 aa6.43□□□□□ -1.38
USP28-209ENST00000540925 NEBP20929 6669 aa6.43□□□□□ -1.38
USP28-209ENST00000540925 FAM236AA0A1B0GUQ0 79 aa6.41□□□□□ -1.38
USP28-209ENST00000540925 FAM236BA0A1B0GV22 79 aa6.41□□□□□ -1.38
USP28-209ENST00000540925 MT1BP07438 61 aa6.38□□□□□ -1.39
USP28-209ENST00000540925 KRTAP19-8Q3LI54 63 aa6.38□□□□□ -1.39
USP28-209ENST00000540925 KLKP1Q107X0 134 aa6.37□□□□□ -1.39
USP28-209ENST00000540925 LINC00208Q96KT6 92 aa6.36□□□□□ -1.39
USP28-209ENST00000540925 A8MUN3 132 aa6.34□□□□□ -1.39
USP28-209ENST00000540925 J3QR89 54 aa6.34□□□□□ -1.39
USP28-209ENST00000540925 MUC12Q9UKN1 5478 aa6.33□□□□□ -1.4
USP28-209ENST00000540925 H0YAA0 97 aa6.31□□□□□ -1.4
USP28-209ENST00000540925 MP68P56378 58 aa6.31□□□□□ -1.4
USP28-209ENST00000540925 Q5VV11 94 aa6.3□□□□□ -1.4
USP28-209ENST00000540925 NDUFC1O43677 76 aa6.29□□□□□ -1.4
USP28-209ENST00000540925 IMUPQ9GZP8 106 aa6.29□□□□□ -1.4
USP28-209ENST00000540925 CRIPTQ9P021 101 aa6.29□□□□□ -1.4
USP28-209ENST00000540925 H3BPC8 53 aa6.27□□□□□ -1.41
USP28-209ENST00000540925 KRTAP20-1Q3LI63 56 aa6.24□□□□□ -1.41
USP28-209ENST00000540925 KRTAP10-5P60370 271 aa6.21□□□□□ -1.42
USP28-209ENST00000540925 A6NN06 94 aa6.2□□□□□ -1.42
USP28-209ENST00000540925 DMAC1Q96GE9 116 aa6.2□□□□□ -1.42
USP28-209ENST00000540925 SCGB1A1P11684 91 aa6.19□□□□□ -1.42
USP28-209ENST00000540925 MT-ATP8P03928 68 aa6.18□□□□□ -1.42
USP28-209ENST00000540925 ADM2Q7Z4H4 148 aa6.17□□□□□ -1.42
USP28-209ENST00000540925 K7ERU9 68 aa6.14□□□□□ -1.43
USP28-209ENST00000540925 TRAV7A0A075B6U4 112 aa6.1□□□□□ -1.43
USP28-209ENST00000540925 SMIM20Q8N5G0 67 aa6.09□□□□□ -1.43
USP28-209ENST00000540925 P0C880 135 aa6.08□□□□□ -1.44
USP28-209ENST00000540925 KRTAP3-2Q9BYR7 98 aa6.08□□□□□ -1.44
USP28-209ENST00000540925 MDN1Q9NU22 5596 aa6.08□□□□□ -1.44
USP28-209ENST00000540925 KMT2DO14686 5537 aa6.03□□□□□ -1.44
USP28-209ENST00000540925 C20orf197Q8N268 126 aa6.01□□□□□ -1.45
USP28-209ENST00000540925 ACYP2P14621 99 aa6□□□□□ -1.45
USP28-209ENST00000540925 MT1XP80297 61 aa6□□□□□ -1.45
USP28-209ENST00000540925 R4GN34 69 aa6□□□□□ -1.45
USP28-209ENST00000540925 KRTAP5-9P26371 169 aa5.97□□□□□ -1.45
USP28-209ENST00000540925 M0QZ58 72 aa5.95□□□□□ -1.46
USP28-209ENST00000540925 SNURFQ9Y675 71 aa5.95□□□□□ -1.46
USP28-209ENST00000540925 KRTAP2-3P0C7H8 128 aa5.93□□□□□ -1.46
USP28-209ENST00000540925 PLAC4Q8WY50 150 aa5.93□□□□□ -1.46
USP28-209ENST00000540925 KRTAP2-4Q9BYR9 128 aa5.93□□□□□ -1.46
USP28-209ENST00000540925 PRO2289Q9P1D8 64 aa5.92□□□□□ -1.46
USP28-209ENST00000540925 SPANXA2-OT1Q8N9U9 137 aa5.91□□□□□ -1.46
USP28-209ENST00000540925 SERP2Q8N6R1 65 aa5.9□□□□□ -1.46
USP28-209ENST00000540925 SPTSSBQ8NFR3 76 aa5.89□□□□□ -1.47
USP28-209ENST00000540925 CHKB-CPT1BH3BT56 60 aa5.84□□□□□ -1.47
USP28-209ENST00000540925 KRTAP12-2P59991 146 aa5.84□□□□□ -1.47
USP28-209ENST00000540925 LINC01554Q52M75 96 aa5.83□□□□□ -1.48
USP28-209ENST00000540925 COX7CP15954 63 aa5.73□□□□□ -1.49
USP28-209ENST00000540925 KRTAP13-4Q3LI77 160 aa5.73□□□□□ -1.49
USP28-209ENST00000540925 SPRR2FQ96RM1 72 aa5.72□□□□□ -1.49
USP28-209ENST00000540925 COA5Q86WW8 74 aa5.71□□□□□ -1.5
USP28-209ENST00000540925 KRTAP8-1Q8IUC2 63 aa5.71□□□□□ -1.5
USP28-209ENST00000540925 KRTAP2-2Q9BYT5 123 aa5.71□□□□□ -1.5
USP28-209ENST00000540925 KRTAP2-1Q9BYU5 128 aa5.71□□□□□ -1.5
USP28-209ENST00000540925 KRTAP10-7P60409 375 aaPredicted RBP5.7□□□□□ -1.5
USP28-209ENST00000540925 KRTAP10-12P60413 245 aa5.7□□□□□ -1.5
USP28-209ENST00000540925 KRTAP4-8A0A0G2JLE6 195 aa5.69□□□□□ -1.5
USP28-209ENST00000540925 KRTAP4-8Q9BYQ9 185 aa5.69□□□□□ -1.5
USP28-209ENST00000540925 CYSTM1Q9H1C7 97 aa5.69□□□□□ -1.5
USP28-209ENST00000540925 H7BZZ5 65 aa5.67□□□□□ -1.5
USP28-209ENST00000540925 SPRR2EP22531 72 aa5.66□□□□□ -1.5
USP28-209ENST00000540925 SPRR2BP35325 72 aa5.66□□□□□ -1.5
USP28-209ENST00000540925 SPRR2AP35326 72 aa5.66□□□□□ -1.5
USP28-209ENST00000540925 GPR98Q8WXG9 6306 aa5.63□□□□□ -1.51
USP28-209ENST00000540925 LCE1AQ5T7P2 110 aa5.61□□□□□ -1.51
USP28-209ENST00000540925 SERP1Q9Y6X1 66 aa5.53□□□□□ -1.52
USP28-209ENST00000540925 SEC61GP60059 68 aa5.52□□□□□ -1.53
USP28-209ENST00000540925 ANAPC13Q9BS18 74 aa5.5□□□□□ -1.53
USP28-209ENST00000540925 SPATA8Q6RVD6 105 aa5.49□□□□□ -1.53
USP28-209ENST00000540925 CAMK2N1Q7Z7J9 78 aa5.49□□□□□ -1.53
USP28-209ENST00000540925 A0A1B0GU33 70 aa5.48□□□□□ -1.53
USP28-209ENST00000540925 SPRR2DP22532 72 aa5.48□□□□□ -1.53
USP28-209ENST00000540925 A0A0D9SG42 100 aa5.46□□□□□ -1.54
USP28-209ENST00000540925 CCDC179H3BU77 68 aa5.44□□□□□ -1.54
USP28-209ENST00000540925 KRTAP12-1P59990 96 aa5.43□□□□□ -1.54
USP28-209ENST00000540925 A0A1B0GU69 56 aa5.38□□□□□ -1.55
USP28-209ENST00000540925 LCE3BQ5TA77 95 aa5.38□□□□□ -1.55
USP28-209ENST00000540925 KRTAP19-7Q3SYF9 63 aa5.37□□□□□ -1.55
USP28-209ENST00000540925 SPINT4Q6UDR6 99 aa5.36□□□□□ -1.55
USP28-209ENST00000540925 ATP5EP56381 51 aaPredicted RBP5.35□□□□□ -1.55
USP28-209ENST00000540925 DSTQ03001 7570 aaKnown RBP5.32□□□□□ -1.56
USP28-209ENST00000540925 SMIM26A0A096LP01 95 aa5.31□□□□□ -1.56
USP28-209ENST00000540925 MT1EP04732 61 aa5.31□□□□□ -1.56
USP28-209ENST00000540925 A8MU10 97 aa5.3□□□□□ -1.56
USP28-209ENST00000540925 LCE5AQ5TCM9 118 aa5.27□□□□□ -1.57
USP28-209ENST00000540925 LINC01558Q9Y6Z2 57 aa5.25□□□□□ -1.57
USP28-209ENST00000540925 TMEM258P61165 79 aa5.23□□□□□ -1.57
USP28-209ENST00000540925 KRTAP19-3Q7Z4W3 81 aa5.23□□□□□ -1.57
USP28-209ENST00000540925 PRR15LQ9BU68 103 aa5.22□□□□□ -1.57
USP28-209ENST00000540925 KRTAP19-5Q3LI72 72 aa5.2□□□□□ -1.58
USP28-209ENST00000540925 KRTAP4-9Q9BYQ8 210 aa5.2□□□□□ -1.58
USP28-209ENST00000540925 C10orf95Q9H7T3 257 aa5.2□□□□□ -1.58
USP28-209ENST00000540925 MT1GP13640 62 aa5.11□□□□□ -1.59
USP28-209ENST00000540925 TNP1P09430 55 aa5.1□□□□□ -1.59
USP28-209ENST00000540925 LCE3AQ5TA76 89 aa5.1□□□□□ -1.59
USP28-209ENST00000540925 UQCR11O14957 56 aa5.07□□□□□ -1.6
USP28-209ENST00000540925 MT1LQ93083 61 aa5.07□□□□□ -1.6
USP28-209ENST00000540925 HMCN1Q96RW7 5635 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms