RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 A8MUN3 132 aa5.36□□□□□ -1.55
SYNE1-238ENST00000540663 MP68P56378 58 aa5.35□□□□□ -1.55
SYNE1-238ENST00000540663 KLKP1Q107X0 134 aa5.35□□□□□ -1.55
SYNE1-238ENST00000540663 LINC00208Q96KT6 92 aa5.35□□□□□ -1.55
SYNE1-238ENST00000540663 SPRR2GQ9BYE4 73 aa5.35□□□□□ -1.55
SYNE1-238ENST00000540663 OCR1Q9BZK8 76 aa5.35□□□□□ -1.55
SYNE1-238ENST00000540663 NDUFC1O43677 76 aa5.33□□□□□ -1.56
SYNE1-238ENST00000540663 KRTAP3-2Q9BYR7 98 aa5.33□□□□□ -1.56
SYNE1-238ENST00000540663 IMUPQ9GZP8 106 aa5.32□□□□□ -1.56
SYNE1-238ENST00000540663 H3BPC8 53 aa5.31□□□□□ -1.56
SYNE1-238ENST00000540663 Q5VV11 94 aa5.31□□□□□ -1.56
SYNE1-238ENST00000540663 CRIPTQ9P021 101 aa5.31□□□□□ -1.56
SYNE1-238ENST00000540663 MACF1Q9UPN3 7388 aaKnown RBP5.3□□□□□ -1.56
SYNE1-238ENST00000540663 KRTAP19-8Q3LI54 63 aa5.3□□□□□ -1.56
SYNE1-238ENST00000540663 H0YAA0 97 aa5.29□□□□□ -1.56
SYNE1-238ENST00000540663 MT1BP07438 61 aa5.27□□□□□ -1.57
SYNE1-238ENST00000540663 SCGB1A1P11684 91 aa5.27□□□□□ -1.57
SYNE1-238ENST00000540663 A6NN06 94 aa5.22□□□□□ -1.57
SYNE1-238ENST00000540663 K7ERU9 68 aa5.2□□□□□ -1.58
SYNE1-238ENST00000540663 ADM2Q7Z4H4 148 aa5.19□□□□□ -1.58
SYNE1-238ENST00000540663 DMAC1Q96GE9 116 aa5.19□□□□□ -1.58
SYNE1-238ENST00000540663 SMIM20Q8N5G0 67 aa5.18□□□□□ -1.58
SYNE1-238ENST00000540663 SYNE2Q8WXH0 6885 aaKnown RBP5.17□□□□□ -1.58
SYNE1-238ENST00000540663 KRTAP10-5P60370 271 aa5.17□□□□□ -1.58
SYNE1-238ENST00000540663 KRTAP6-3Q3LI67 103 aa5.16□□□□□ -1.58
SYNE1-238ENST00000540663 MT-ATP8P03928 68 aa5.15□□□□□ -1.59
SYNE1-238ENST00000540663 TRAV7A0A075B6U4 112 aa5.14□□□□□ -1.59
SYNE1-238ENST00000540663 C20orf197Q8N268 126 aa5.14□□□□□ -1.59
SYNE1-238ENST00000540663 ACYP2P14621 99 aa5.08□□□□□ -1.6
SYNE1-238ENST00000540663 R4GN34 69 aa5.08□□□□□ -1.6
SYNE1-238ENST00000540663 P0C880 135 aa5.06□□□□□ -1.6
SYNE1-238ENST00000540663 SPTSSBQ8NFR3 76 aa5.05□□□□□ -1.6
SYNE1-238ENST00000540663 PLAC4Q8WY50 150 aa5.03□□□□□ -1.6
SYNE1-238ENST00000540663 PRO2289Q9P1D8 64 aa5.03□□□□□ -1.6
SYNE1-238ENST00000540663 M0QZ58 72 aa5.02□□□□□ -1.61
SYNE1-238ENST00000540663 CHKB-CPT1BH3BT56 60 aa4.98□□□□□ -1.61
SYNE1-238ENST00000540663 SNURFQ9Y675 71 aa4.98□□□□□ -1.61
SYNE1-238ENST00000540663 SERP2Q8N6R1 65 aa4.97□□□□□ -1.61
SYNE1-238ENST00000540663 SPANXA2-OT1Q8N9U9 137 aa4.97□□□□□ -1.61
SYNE1-238ENST00000540663 MT1XP80297 61 aa4.96□□□□□ -1.62
SYNE1-238ENST00000540663 MUC12Q9UKN1 5478 aa4.95□□□□□ -1.62
SYNE1-238ENST00000540663 KRTAP5-9P26371 169 aa4.95□□□□□ -1.62
SYNE1-238ENST00000540663 LINC01554Q52M75 96 aa4.93□□□□□ -1.62
SYNE1-238ENST00000540663 NEBP20929 6669 aa4.92□□□□□ -1.62
SYNE1-238ENST00000540663 MDN1Q9NU22 5596 aa4.92□□□□□ -1.62
SYNE1-238ENST00000540663 KMT2DO14686 5537 aa4.91□□□□□ -1.62
SYNE1-238ENST00000540663 KRTAP12-2P59991 146 aa4.88□□□□□ -1.63
SYNE1-238ENST00000540663 COX7CP15954 63 aa4.81□□□□□ -1.64
SYNE1-238ENST00000540663 COA5Q86WW8 74 aa4.8□□□□□ -1.64
SYNE1-238ENST00000540663 KRTAP8-1Q8IUC2 63 aa4.8□□□□□ -1.64
SYNE1-238ENST00000540663 SPRR2FQ96RM1 72 aa4.79□□□□□ -1.64
SYNE1-238ENST00000540663 KRTAP20-1Q3LI63 56 aa4.75□□□□□ -1.65
SYNE1-238ENST00000540663 SEC61GP60059 68 aa4.74□□□□□ -1.65
SYNE1-238ENST00000540663 H7BZZ5 65 aa4.73□□□□□ -1.65
SYNE1-238ENST00000540663 KRTAP10-12P60413 245 aa4.73□□□□□ -1.65
SYNE1-238ENST00000540663 KRTAP13-4Q3LI77 160 aa4.73□□□□□ -1.65
SYNE1-238ENST00000540663 SERP1Q9Y6X1 66 aa4.72□□□□□ -1.65
SYNE1-238ENST00000540663 SPRR2EP22531 72 aa4.71□□□□□ -1.66
SYNE1-238ENST00000540663 SPRR2BP35325 72 aa4.71□□□□□ -1.66
SYNE1-238ENST00000540663 SPRR2AP35326 72 aa4.71□□□□□ -1.66
SYNE1-238ENST00000540663 KRTAP10-7P60409 375 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-238ENST00000540663 KRTAP4-8A0A0G2JLE6 195 aa4.69□□□□□ -1.66
SYNE1-238ENST00000540663 KRTAP4-8Q9BYQ9 185 aa4.69□□□□□ -1.66
SYNE1-238ENST00000540663 CYSTM1Q9H1C7 97 aa4.68□□□□□ -1.66
SYNE1-238ENST00000540663 H3BS24 57 aa4.67□□□□□ -1.66
SYNE1-238ENST00000540663 CAMK2N1Q7Z7J9 78 aa4.67□□□□□ -1.66
SYNE1-238ENST00000540663 LCE1AQ5T7P2 110 aa4.66□□□□□ -1.66
SYNE1-238ENST00000540663 KRTAP2-3P0C7H8 128 aa4.65□□□□□ -1.67
SYNE1-238ENST00000540663 ANAPC13Q9BS18 74 aa4.65□□□□□ -1.67
SYNE1-238ENST00000540663 KRTAP2-4Q9BYR9 128 aa4.65□□□□□ -1.67
SYNE1-238ENST00000540663 A0A1B0GU33 70 aa4.63□□□□□ -1.67
SYNE1-238ENST00000540663 PCP4P48539 62 aa4.61□□□□□ -1.67
SYNE1-238ENST00000540663 A0A0D9SG42 100 aa4.6□□□□□ -1.67
SYNE1-238ENST00000540663 SPATA8Q6RVD6 105 aa4.58□□□□□ -1.68
SYNE1-238ENST00000540663 A0A1B0GU69 56 aa4.56□□□□□ -1.68
SYNE1-238ENST00000540663 SPRR2DP22532 72 aa4.56□□□□□ -1.68
SYNE1-238ENST00000540663 ATP5EP56381 51 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-238ENST00000540663 SPINT4Q6UDR6 99 aa4.54□□□□□ -1.68
SYNE1-238ENST00000540663 SMIM26A0A096LP01 95 aa4.53□□□□□ -1.68
SYNE1-238ENST00000540663 CCDC179H3BU77 68 aa4.53□□□□□ -1.68
SYNE1-238ENST00000540663 KRTAP12-1P59990 96 aa4.52□□□□□ -1.69
SYNE1-238ENST00000540663 KRTAP2-2Q9BYT5 123 aa4.51□□□□□ -1.69
SYNE1-238ENST00000540663 KRTAP2-1Q9BYU5 128 aa4.51□□□□□ -1.69
SYNE1-238ENST00000540663 PRR15LQ9BU68 103 aa4.47□□□□□ -1.69
SYNE1-238ENST00000540663 A0A0A0MQY5 61 aa4.43□□□□□ -1.7
SYNE1-238ENST00000540663 KRTAP19-7Q3SYF9 63 aa4.43□□□□□ -1.7
SYNE1-238ENST00000540663 LCE3BQ5TA77 95 aa4.43□□□□□ -1.7
SYNE1-238ENST00000540663 A8MU10 97 aa4.42□□□□□ -1.7
SYNE1-238ENST00000540663 TMEM258P61165 79 aa4.42□□□□□ -1.7
SYNE1-238ENST00000540663 LINC01558Q9Y6Z2 57 aa4.41□□□□□ -1.7
SYNE1-238ENST00000540663 MT1EP04732 61 aa4.4□□□□□ -1.71
SYNE1-238ENST00000540663 LCE5AQ5TCM9 118 aa4.37□□□□□ -1.71
SYNE1-238ENST00000540663 KRTAP19-3Q7Z4W3 81 aa4.36□□□□□ -1.71
SYNE1-238ENST00000540663 TNP1P09430 55 aa4.33□□□□□ -1.72
SYNE1-238ENST00000540663 KRTAP19-5Q3LI72 72 aa4.33□□□□□ -1.72
SYNE1-238ENST00000540663 UQCR11O14957 56 aa4.31□□□□□ -1.72
SYNE1-238ENST00000540663 C10orf95Q9H7T3 257 aa4.31□□□□□ -1.72
SYNE1-238ENST00000540663 MT1GP13640 62 aa4.28□□□□□ -1.72
SYNE1-238ENST00000540663 PP632Q6XCG6 107 aa4.26□□□□□ -1.73
SYNE1-238ENST00000540663 DSTQ03001 7570 aaKnown RBP4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms