RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 RYR2Q92736 4967 aa6.69□□□□□ -1.34
SFSWAP-209ENST00000540469 A0A0A0MQY5 61 aa6.69□□□□□ -1.34
SFSWAP-209ENST00000540469 KRTAP13-4Q3LI77 160 aa6.68□□□□□ -1.34
SFSWAP-209ENST00000540469 FAT1Q14517 4588 aa6.67□□□□□ -1.34
SFSWAP-209ENST00000540469 FAT2Q9NYQ8 4349 aa6.67□□□□□ -1.34
SFSWAP-209ENST00000540469 KRTAP10-6P60371 365 aaPredicted RBP6.65□□□□□ -1.35
SFSWAP-209ENST00000540469 S4R3F8 94 aa6.63□□□□□ -1.35
SFSWAP-209ENST00000540469 DYNC1H1Q14204 4646 aaKnown RBP6.61□□□□□ -1.35
SFSWAP-209ENST00000540469 KIAA1109Q2LD37 5005 aa6.59□□□□□ -1.35
SFSWAP-209ENST00000540469 PKD1P98161 4303 aa6.58□□□□□ -1.36
SFSWAP-209ENST00000540469 KRTAP15-1Q3LI76 137 aa6.58□□□□□ -1.36
SFSWAP-209ENST00000540469 EPPK1P58107 5090 aaKnown RBP6.58□□□□□ -1.36
SFSWAP-209ENST00000540469 KRTAP3-3Q9BYR6 98 aa6.56□□□□□ -1.36
SFSWAP-209ENST00000540469 KRTAP3-2Q9BYR7 98 aa6.55□□□□□ -1.36
SFSWAP-209ENST00000540469 KRTAP12-2P59991 146 aa6.54□□□□□ -1.36
SFSWAP-209ENST00000540469 A0A1B0GVY2 172 aa6.5□□□□□ -1.37
SFSWAP-209ENST00000540469 APOBP04114 4563 aaKnown RBP6.49□□□□□ -1.37
SFSWAP-209ENST00000540469 KRTAP10-8P60410 259 aa6.47□□□□□ -1.37
SFSWAP-209ENST00000540469 KRTAP12-1P59990 96 aa6.43□□□□□ -1.38
SFSWAP-209ENST00000540469 LRP1Q07954 4544 aaKnown RBP6.41□□□□□ -1.38
SFSWAP-209ENST00000540469 MYCBP2O75592 4640 aa6.41□□□□□ -1.38
SFSWAP-209ENST00000540469 KRTAP17-1Q9BYP8 105 aa6.4□□□□□ -1.38
SFSWAP-209ENST00000540469 LUZP6Q538Z0 58 aa6.39□□□□□ -1.39
SFSWAP-209ENST00000540469 Q5VSD8 79 aa6.39□□□□□ -1.39
SFSWAP-209ENST00000540469 XP32Q5T750 250 aa6.38□□□□□ -1.39
SFSWAP-209ENST00000540469 KRTAP10-4P60372 401 aaPredicted RBP6.36□□□□□ -1.39
SFSWAP-209ENST00000540469 RYR1P21817 5038 aa6.35□□□□□ -1.39
SFSWAP-209ENST00000540469 M0QZ58 72 aa6.34□□□□□ -1.39
SFSWAP-209ENST00000540469 HSPG2P98160 4391 aa6.33□□□□□ -1.4
SFSWAP-209ENST00000540469 KRTAP4-5Q9BYR2 181 aa6.32□□□□□ -1.4
SFSWAP-209ENST00000540469 R4GN34 69 aa6.26□□□□□ -1.41
SFSWAP-209ENST00000540469 PKHD1L1Q86WI1 4243 aa6.26□□□□□ -1.41
SFSWAP-209ENST00000540469 FAT3Q8TDW7 4589 aa6.26□□□□□ -1.41
SFSWAP-209ENST00000540469 PLAC4Q8WY50 150 aa6.22□□□□□ -1.41
SFSWAP-209ENST00000540469 ABCA13Q86UQ4 5058 aa6.18□□□□□ -1.42
SFSWAP-209ENST00000540469 HERC2O95714 4834 aa6.16□□□□□ -1.42
SFSWAP-209ENST00000540469 BIRC6Q9NR09 4857 aa6.09□□□□□ -1.43
SFSWAP-209ENST00000540469 J3QL48 77 aa6.09□□□□□ -1.43
SFSWAP-209ENST00000540469 CAMK2N1Q7Z7J9 78 aa6.06□□□□□ -1.44
SFSWAP-209ENST00000540469 PCLOQ9Y6V0 5065 aa6.06□□□□□ -1.44
SFSWAP-209ENST00000540469 HERC1Q15751 4861 aa6.02□□□□□ -1.45
SFSWAP-209ENST00000540469 TNXBP22105 4242 aa6□□□□□ -1.45
SFSWAP-209ENST00000540469 MT1HL1P0DM35 61 aa6□□□□□ -1.45
SFSWAP-209ENST00000540469 LPAP08519 4548 aa6□□□□□ -1.45
SFSWAP-209ENST00000540469 LRP2P98164 4655 aa5.96□□□□□ -1.46
SFSWAP-209ENST00000540469 LORP23490 312 aaPredicted RBP5.96□□□□□ -1.46
SFSWAP-209ENST00000540469 PP632Q6XCG6 107 aa5.94□□□□□ -1.46
SFSWAP-209ENST00000540469 MUC2Q02817 5179 aa5.87□□□□□ -1.47
SFSWAP-209ENST00000540469 SEC61BP60468 96 aaKnown RBP5.83□□□□□ -1.48
SFSWAP-209ENST00000540469 RNF213Q63HN8 5207 aa5.78□□□□□ -1.48
SFSWAP-209ENST00000540469 TNP1P09430 55 aa5.76□□□□□ -1.49
SFSWAP-209ENST00000540469 UBR4Q5T4S7 5183 aa5.74□□□□□ -1.49
SFSWAP-209ENST00000540469 KRTAP4-1Q9BYQ7 146 aa5.64□□□□□ -1.51
SFSWAP-209ENST00000540469 HMCN2Q8NDA2 5059 aa5.62□□□□□ -1.51
SFSWAP-209ENST00000540469 FAT4Q6V0I7 4981 aa5.6□□□□□ -1.51
SFSWAP-209ENST00000540469 SPRR5A0A1B0GTR4 108 aa5.49□□□□□ -1.53
SFSWAP-209ENST00000540469 KRTAP23-1A1A580 65 aa5.49□□□□□ -1.53
SFSWAP-209ENST00000540469 MUC17Q685J3 4493 aa5.49□□□□□ -1.53
SFSWAP-209ENST00000540469 KRTAP19-2Q3LHN2 52 aa5.41□□□□□ -1.54
SFSWAP-209ENST00000540469 PRO2289Q9P1D8 64 aa5.39□□□□□ -1.55
SFSWAP-209ENST00000540469 LCE3AQ5TA76 89 aa5.35□□□□□ -1.55
SFSWAP-209ENST00000540469 M0R2T5 61 aa5.34□□□□□ -1.55
SFSWAP-209ENST00000540469 FLGP20930 4061 aaPredicted RBP5.27□□□□□ -1.57
SFSWAP-209ENST00000540469 INE1O15225 51 aa5.25□□□□□ -1.57
SFSWAP-209ENST00000540469 SPRR2GQ9BYE4 73 aa5.19□□□□□ -1.58
SFSWAP-209ENST00000540469 KRTAP19-1Q8IUB9 90 aa5.17□□□□□ -1.58
SFSWAP-209ENST00000540469 KRTAP10-10P60014 251 aa5.17□□□□□ -1.58
SFSWAP-209ENST00000540469 FSIP2Q5CZC0 6907 aa5.15□□□□□ -1.58
SFSWAP-209ENST00000540469 LCE2CQ5TA81 110 aa5.12□□□□□ -1.59
SFSWAP-209ENST00000540469 KRTAP8-1Q8IUC2 63 aa5.1□□□□□ -1.59
SFSWAP-209ENST00000540469 KRTAP12-3P60328 96 aa5.09□□□□□ -1.59
SFSWAP-209ENST00000540469 MT1HP80294 61 aa5.08□□□□□ -1.6
SFSWAP-209ENST00000540469 KRTAP10-12P60413 245 aa5.04□□□□□ -1.6
SFSWAP-209ENST00000540469 USH2AO75445 5202 aa5□□□□□ -1.61
SFSWAP-209ENST00000540469 MT1FP04733 61 aa5□□□□□ -1.61
SFSWAP-209ENST00000540469 MT2AP02795 61 aa4.97□□□□□ -1.61
SFSWAP-209ENST00000540469 KRTAP10-5P60370 271 aa4.92□□□□□ -1.62
SFSWAP-209ENST00000540469 MT1XP80297 61 aa4.91□□□□□ -1.62
SFSWAP-209ENST00000540469 KRTAP19-8Q3LI54 63 aa4.87□□□□□ -1.63
SFSWAP-209ENST00000540469 KRTAP10-7P60409 375 aaPredicted RBP4.87□□□□□ -1.63
SFSWAP-209ENST00000540469 MT1BP07438 61 aa4.85□□□□□ -1.63
SFSWAP-209ENST00000540469 KRTAP9-8Q9BYQ0 159 aa4.84□□□□□ -1.63
SFSWAP-209ENST00000540469 LCE2AQ5TA79 106 aaPredicted RBP4.78□□□□□ -1.64
SFSWAP-209ENST00000540469 LCE3CQ5T5A8 94 aa4.75□□□□□ -1.65
SFSWAP-209ENST00000540469 KRTAP19-5Q3LI72 72 aa4.75□□□□□ -1.65
SFSWAP-209ENST00000540469 KMT2DO14686 5537 aa4.73□□□□□ -1.65
SFSWAP-209ENST00000540469 KRTAP9-3Q9BYQ3 159 aa4.64□□□□□ -1.67
SFSWAP-209ENST00000540469 LCE2BO14633 110 aa4.64□□□□□ -1.67
SFSWAP-209ENST00000540469 KRTAP9-6A8MVA2 160 aa4.56□□□□□ -1.68
SFSWAP-209ENST00000540469 SSPOA2VEC9 5147 aa4.56□□□□□ -1.68
SFSWAP-209ENST00000540469 KRTAP4-8A0A0G2JLE6 195 aa4.54□□□□□ -1.68
SFSWAP-209ENST00000540469 KRTAP4-8Q9BYQ9 185 aa4.54□□□□□ -1.68
SFSWAP-209ENST00000540469 KRTAP4-7Q9BYR0 210 aa4.51□□□□□ -1.69
SFSWAP-209ENST00000540469 KRTAP2-3P0C7H8 128 aa4.46□□□□□ -1.7
SFSWAP-209ENST00000540469 KRTAP2-4Q9BYR9 128 aa4.46□□□□□ -1.7
SFSWAP-209ENST00000540469 KRTAP2-1Q9BYU5 128 aa4.46□□□□□ -1.7
SFSWAP-209ENST00000540469 KRTAP9-2Q9BYQ4 174 aa4.38□□□□□ -1.71
SFSWAP-209ENST00000540469 FCGBPQ9Y6R7 5405 aaPredicted RBP4.36□□□□□ -1.71
SFSWAP-209ENST00000540469 KRTAP19-7Q3SYF9 63 aa4.35□□□□□ -1.71
SFSWAP-209ENST00000540469 LCE2DQ5TA82 110 aaPredicted RBP4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms