RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 DNHD1Q96M86 4753 aa3.24□□□□□ -1.89
PTPRD-214ENST00000540109 LYSTQ99698 3801 aa3.23□□□□□ -1.89
PTPRD-214ENST00000540109 KRTAP10-4P60372 401 aaPredicted RBP3.23□□□□□ -1.89
PTPRD-214ENST00000540109 TGP01266 2768 aa3.23□□□□□ -1.89
PTPRD-214ENST00000540109 TPRXLQ17RH7 258 aa3.23□□□□□ -1.89
PTPRD-214ENST00000540109 FRAS1Q86XX4 4008 aa3.22□□□□□ -1.89
PTPRD-214ENST00000540109 SACSQ9NZJ4 4579 aa3.22□□□□□ -1.89
PTPRD-214ENST00000540109 PKD1P98161 4303 aa3.2□□□□□ -1.9
PTPRD-214ENST00000540109 FAT2Q9NYQ8 4349 aa3.2□□□□□ -1.9
PTPRD-214ENST00000540109 DYNC1H1Q14204 4646 aaKnown RBP3.18□□□□□ -1.9
PTPRD-214ENST00000540109 KMT2AQ03164 3969 aa3.18□□□□□ -1.9
PTPRD-214ENST00000540109 SRRM2Q9UQ35 2752 aaKnown RBP3.17□□□□□ -1.9
PTPRD-214ENST00000540109 KRTAP15-1Q3LI76 137 aa3.15□□□□□ -1.9
PTPRD-214ENST00000540109 PRO2289Q9P1D8 64 aa3.15□□□□□ -1.91
PTPRD-214ENST00000540109 PKHD1L1Q86WI1 4243 aa3.14□□□□□ -1.91
PTPRD-214ENST00000540109 LRP1BQ9NZR2 4599 aa3.14□□□□□ -1.91
PTPRD-214ENST00000540109 RYR2Q92736 4967 aa3.12□□□□□ -1.91
PTPRD-214ENST00000540109 APOBP04114 4563 aaKnown RBP3.11□□□□□ -1.91
PTPRD-214ENST00000540109 KRTAP23-1A1A580 65 aa3.11□□□□□ -1.91
PTPRD-214ENST00000540109 HYDINQ4G0P3 5121 aa3.1□□□□□ -1.91
PTPRD-214ENST00000540109 KRTAP12-2P59991 146 aa3.09□□□□□ -1.92
PTPRD-214ENST00000540109 VPS13BQ7Z7G8 4022 aa3.07□□□□□ -1.92
PTPRD-214ENST00000540109 XP32Q5T750 250 aa3.06□□□□□ -1.92
PTPRD-214ENST00000540109 KRTAP13-4Q3LI77 160 aa3.06□□□□□ -1.92
PTPRD-214ENST00000540109 PKHD1P08F94 4074 aa3.05□□□□□ -1.92
PTPRD-214ENST00000540109 MT1HL1P0DM35 61 aa3.03□□□□□ -1.93
PTPRD-214ENST00000540109 FAT1Q14517 4588 aa3□□□□□ -1.93
PTPRD-214ENST00000540109 KRTAP3-1Q9BYR8 98 aa3□□□□□ -1.93
PTPRD-214ENST00000540109 RYR1P21817 5038 aa3□□□□□ -1.93
PTPRD-214ENST00000540109 KRTAP12-1P59990 96 aa2.98□□□□□ -1.93
PTPRD-214ENST00000540109 TNXBP22105 4242 aa2.97□□□□□ -1.93
PTPRD-214ENST00000540109 FAT3Q8TDW7 4589 aa2.96□□□□□ -1.94
PTPRD-214ENST00000540109 HSPG2P98160 4391 aa2.94□□□□□ -1.94
PTPRD-214ENST00000540109 KMT2CQ8NEZ4 4911 aaKnown RBP2.9□□□□□ -1.95
PTPRD-214ENST00000540109 KRTAP3-3Q9BYR6 98 aa2.89□□□□□ -1.95
PTPRD-214ENST00000540109 KRTAP10-6P60371 365 aaPredicted RBP2.89□□□□□ -1.95
PTPRD-214ENST00000540109 RYR3Q15413 4870 aa2.88□□□□□ -1.95
PTPRD-214ENST00000540109 KRTAP17-1Q9BYP8 105 aa2.86□□□□□ -1.95
PTPRD-214ENST00000540109 MYCBP2O75592 4640 aa2.86□□□□□ -1.95
PTPRD-214ENST00000540109 KRTAP3-2Q9BYR7 98 aa2.85□□□□□ -1.95
PTPRD-214ENST00000540109 LRP1Q07954 4544 aaKnown RBP2.85□□□□□ -1.95
PTPRD-214ENST00000540109 KIAA1109Q2LD37 5005 aa2.83□□□□□ -1.96
PTPRD-214ENST00000540109 KRTAP19-4Q3LI73 84 aa2.8□□□□□ -1.96
PTPRD-214ENST00000540109 KRTAP4-5Q9BYR2 181 aa2.8□□□□□ -1.96
PTPRD-214ENST00000540109 MUC17Q685J3 4493 aa2.78□□□□□ -1.96
PTPRD-214ENST00000540109 BIRC6Q9NR09 4857 aa2.77□□□□□ -1.97
PTPRD-214ENST00000540109 HERC2O95714 4834 aa2.76□□□□□ -1.97
PTPRD-214ENST00000540109 EPPK1P58107 5090 aaKnown RBP2.74□□□□□ -1.97
PTPRD-214ENST00000540109 KRTAP4-1Q9BYQ7 146 aa2.69□□□□□ -1.98
PTPRD-214ENST00000540109 KRTAP19-2Q3LHN2 52 aa2.69□□□□□ -1.98
PTPRD-214ENST00000540109 ABCA13Q86UQ4 5058 aa2.69□□□□□ -1.98
PTPRD-214ENST00000540109 HERC1Q15751 4861 aa2.66□□□□□ -1.98
PTPRD-214ENST00000540109 LRP2P98164 4655 aa2.64□□□□□ -1.99
PTPRD-214ENST00000540109 KRTAP10-10P60014 251 aa2.62□□□□□ -1.99
PTPRD-214ENST00000540109 FLGP20930 4061 aaPredicted RBP2.59□□□□□ -2
PTPRD-214ENST00000540109 PCLOQ9Y6V0 5065 aa2.57□□□□□ -2
PTPRD-214ENST00000540109 SPRR2GQ9BYE4 73 aa2.57□□□□□ -2
PTPRD-214ENST00000540109 HMCN2Q8NDA2 5059 aa2.57□□□□□ -2
PTPRD-214ENST00000540109 LCE2CQ5TA81 110 aa2.56□□□□□ -2
PTPRD-214ENST00000540109 LPAP08519 4548 aa2.56□□□□□ -2
PTPRD-214ENST00000540109 LORP23490 312 aaPredicted RBP2.56□□□□□ -2
PTPRD-214ENST00000540109 SPRR5A0A1B0GTR4 108 aa2.54□□□□□ -2
PTPRD-214ENST00000540109 KRTAP12-3P60328 96 aa2.54□□□□□ -2
PTPRD-214ENST00000540109 MT1HP80294 61 aa2.53□□□□□ -2
PTPRD-214ENST00000540109 LCE3AQ5TA76 89 aa2.53□□□□□ -2
PTPRD-214ENST00000540109 KRTAP10-12P60413 245 aa2.52□□□□□ -2.01
PTPRD-214ENST00000540109 CRCT1Q9UGL9 99 aa2.52□□□□□ -2.01
PTPRD-214ENST00000540109 KRTAP19-8Q3LI54 63 aa2.49□□□□□ -2.01
PTPRD-214ENST00000540109 MT2AP02795 61 aa2.48□□□□□ -2.01
PTPRD-214ENST00000540109 KRTAP19-1Q8IUB9 90 aa2.47□□□□□ -2.01
PTPRD-214ENST00000540109 KRTAP8-1Q8IUC2 63 aa2.46□□□□□ -2.01
PTPRD-214ENST00000540109 LCE2DQ5TA82 110 aaPredicted RBP2.45□□□□□ -2.02
PTPRD-214ENST00000540109 KRTAP9-8Q9BYQ0 159 aa2.44□□□□□ -2.02
PTPRD-214ENST00000540109 KRTAP10-5P60370 271 aa2.44□□□□□ -2.02
PTPRD-214ENST00000540109 MT1FP04733 61 aa2.44□□□□□ -2.02
PTPRD-214ENST00000540109 RNF213Q63HN8 5207 aa2.44□□□□□ -2.02
PTPRD-214ENST00000540109 KRTAP9-3Q9BYQ3 159 aa2.37□□□□□ -2.03
PTPRD-214ENST00000540109 MT1BP07438 61 aa2.36□□□□□ -2.03
PTPRD-214ENST00000540109 FAT4Q6V0I7 4981 aa2.35□□□□□ -2.03
PTPRD-214ENST00000540109 KRTAP10-7P60409 375 aaPredicted RBP2.34□□□□□ -2.04
PTPRD-214ENST00000540109 MT1XP80297 61 aa2.32□□□□□ -2.04
PTPRD-214ENST00000540109 UBR4Q5T4S7 5183 aa2.32□□□□□ -2.04
PTPRD-214ENST00000540109 LCE2AQ5TA79 106 aaPredicted RBP2.32□□□□□ -2.04
PTPRD-214ENST00000540109 MT3P25713 68 aa2.28□□□□□ -2.04
PTPRD-214ENST00000540109 MUC2Q02817 5179 aa2.27□□□□□ -2.05
PTPRD-214ENST00000540109 LCE3CQ5T5A8 94 aa2.26□□□□□ -2.05
PTPRD-214ENST00000540109 LCE2BO14633 110 aa2.22□□□□□ -2.05
PTPRD-214ENST00000540109 KRTAP12-4P60329 112 aa2.19□□□□□ -2.06
PTPRD-214ENST00000540109 KRTAP19-5Q3LI72 72 aa2.17□□□□□ -2.06
PTPRD-214ENST00000540109 KRTAP19-6Q3LI70 58 aa2.16□□□□□ -2.06
PTPRD-214ENST00000540109 USH2AO75445 5202 aa2.07□□□□□ -2.08
PTPRD-214ENST00000540109 KRTAP19-7Q3SYF9 63 aa2.06□□□□□ -2.08
PTPRD-214ENST00000540109 MT1EP04732 61 aa2.05□□□□□ -2.08
PTPRD-214ENST00000540109 LCE3BQ5TA77 95 aa2.05□□□□□ -2.08
PTPRD-214ENST00000540109 LCE3EQ5T5B0 92 aa2.04□□□□□ -2.08
PTPRD-214ENST00000540109 MT1LQ93083 61 aa2.03□□□□□ -2.08
PTPRD-214ENST00000540109 SPRR2FQ96RM1 72 aa2.03□□□□□ -2.09
PTPRD-214ENST00000540109 KRTAP4-8A0A0G2JLE6 195 aa2.01□□□□□ -2.09
PTPRD-214ENST00000540109 KRTAP4-8Q9BYQ9 185 aa2.01□□□□□ -2.09
PTPRD-214ENST00000540109 PRM1P04553 51 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms