RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 SPINT4Q6UDR6 99 aa3.71□□□□□ -1.82
MSH6-209ENST00000538136 SPTSSBQ8NFR3 76 aa3.7□□□□□ -1.82
MSH6-209ENST00000538136 KRTAP4-1Q9BYQ7 146 aa3.7□□□□□ -1.82
MSH6-209ENST00000538136 R4GN34 69 aa3.68□□□□□ -1.82
MSH6-209ENST00000538136 H3BS24 57 aa3.68□□□□□ -1.82
MSH6-209ENST00000538136 H1FX-AS1Q4G0G2 97 aa3.68□□□□□ -1.82
MSH6-209ENST00000538136 COA5Q86WW8 74 aa3.68□□□□□ -1.82
MSH6-209ENST00000538136 PRR15LQ9BU68 103 aa3.67□□□□□ -1.82
MSH6-209ENST00000538136 ADM2Q7Z4H4 148 aa3.67□□□□□ -1.82
MSH6-209ENST00000538136 LCA10Q71F78 164 aa3.67□□□□□ -1.82
MSH6-209ENST00000538136 A0A1B0GU69 56 aa3.66□□□□□ -1.82
MSH6-209ENST00000538136 ATP5EP56381 51 aaPredicted RBP3.65□□□□□ -1.82
MSH6-209ENST00000538136 M0QZ58 72 aa3.65□□□□□ -1.83
MSH6-209ENST00000538136 A6NED7 52 aa3.63□□□□□ -1.83
MSH6-209ENST00000538136 CAMK2N1Q7Z7J9 78 aa3.63□□□□□ -1.83
MSH6-209ENST00000538136 HMCN2Q8NDA2 5059 aa3.62□□□□□ -1.83
MSH6-209ENST00000538136 PMAIP1Q13794 54 aa3.61□□□□□ -1.83
MSH6-209ENST00000538136 H3BPC8 53 aa3.61□□□□□ -1.83
MSH6-209ENST00000538136 PKHD1L1Q86WI1 4243 aa3.59□□□□□ -1.83
MSH6-209ENST00000538136 SPATA8Q6RVD6 105 aa3.58□□□□□ -1.84
MSH6-209ENST00000538136 A8MUN3 132 aa3.56□□□□□ -1.84
MSH6-209ENST00000538136 K7ERS5 55 aa3.54□□□□□ -1.84
MSH6-209ENST00000538136 A0A0A0MQY5 61 aa3.54□□□□□ -1.84
MSH6-209ENST00000538136 A8MU10 97 aa3.53□□□□□ -1.84
MSH6-209ENST00000538136 Q1T7F1 81 aa3.53□□□□□ -1.84
MSH6-209ENST00000538136 P0C880 135 aa3.51□□□□□ -1.85
MSH6-209ENST00000538136 TNXBP22105 4242 aa3.5□□□□□ -1.85
MSH6-209ENST00000538136 A0A1B0GU33 70 aa3.5□□□□□ -1.85
MSH6-209ENST00000538136 PLAC4Q8WY50 150 aa3.5□□□□□ -1.85
MSH6-209ENST00000538136 DMAC1Q96GE9 116 aa3.5□□□□□ -1.85
MSH6-209ENST00000538136 KRTAP3-1Q9BYR8 98 aa3.49□□□□□ -1.85
MSH6-209ENST00000538136 Q5VV11 94 aa3.47□□□□□ -1.85
MSH6-209ENST00000538136 MT1HP80294 61 aa3.46□□□□□ -1.86
MSH6-209ENST00000538136 USH2AO75445 5202 aa3.46□□□□□ -1.86
MSH6-209ENST00000538136 CRIPTQ9P021 101 aa3.45□□□□□ -1.86
MSH6-209ENST00000538136 KTN1-AS1Q86SY8 53 aa3.45□□□□□ -1.86
MSH6-209ENST00000538136 SPANXA2-OT1Q8N9U9 137 aa3.44□□□□□ -1.86
MSH6-209ENST00000538136 UQCR11O14957 56 aa3.42□□□□□ -1.86
MSH6-209ENST00000538136 MIR22HGQ0VDD5 57 aa3.41□□□□□ -1.86
MSH6-209ENST00000538136 LORP23490 312 aaPredicted RBP3.38□□□□□ -1.87
MSH6-209ENST00000538136 KRTAP10-6P60371 365 aaPredicted RBP3.37□□□□□ -1.87
MSH6-209ENST00000538136 CDC42SE1Q9NRR8 79 aa3.37□□□□□ -1.87
MSH6-209ENST00000538136 A6NN06 94 aa3.35□□□□□ -1.87
MSH6-209ENST00000538136 PRAC1Q96KF2 57 aa3.34□□□□□ -1.88
MSH6-209ENST00000538136 MT1FP04733 61 aa3.32□□□□□ -1.88
MSH6-209ENST00000538136 LINC01558Q9Y6Z2 57 aa3.32□□□□□ -1.88
MSH6-209ENST00000538136 MT2AP02795 61 aa3.32□□□□□ -1.88
MSH6-209ENST00000538136 OBSCNQ5VST9 7968 aa3.32□□□□□ -1.88
MSH6-209ENST00000538136 LCE2CQ5TA81 110 aa3.31□□□□□ -1.88
MSH6-209ENST00000538136 MUC17Q685J3 4493 aa3.31□□□□□ -1.88
MSH6-209ENST00000538136 KRTAP3-3Q9BYR6 98 aa3.29□□□□□ -1.88
MSH6-209ENST00000538136 KRTAP9-2Q9BYQ4 174 aa3.28□□□□□ -1.88
MSH6-209ENST00000538136 DSTQ03001 7570 aaKnown RBP3.24□□□□□ -1.89
MSH6-209ENST00000538136 KRTAP13-4Q3LI77 160 aa3.23□□□□□ -1.89
MSH6-209ENST00000538136 KRTAP19-2Q3LHN2 52 aa3.22□□□□□ -1.89
MSH6-209ENST00000538136 PRO2289Q9P1D8 64 aa3.2□□□□□ -1.9
MSH6-209ENST00000538136 H0YAA0 97 aa3.18□□□□□ -1.9
MSH6-209ENST00000538136 KRTAP9-8Q9BYQ0 159 aa3.18□□□□□ -1.9
MSH6-209ENST00000538136 SYNE2Q8WXH0 6885 aaKnown RBP3.18□□□□□ -1.9
MSH6-209ENST00000538136 LCE2AQ5TA79 106 aaPredicted RBP3.18□□□□□ -1.9
MSH6-209ENST00000538136 SSPOA2VEC9 5147 aa3.16□□□□□ -1.9
MSH6-209ENST00000538136 CRCT1Q9UGL9 99 aa3.16□□□□□ -1.9
MSH6-209ENST00000538136 KRTAP12-2P59991 146 aa3.16□□□□□ -1.9
MSH6-209ENST00000538136 KMT2DO14686 5537 aa3.16□□□□□ -1.9
MSH6-209ENST00000538136 KRTAP3-2Q9BYR7 98 aa3.15□□□□□ -1.91
MSH6-209ENST00000538136 FLGP20930 4061 aaPredicted RBP3.14□□□□□ -1.91
MSH6-209ENST00000538136 TNP1P09430 55 aa3.13□□□□□ -1.91
MSH6-209ENST00000538136 C10orf95Q9H7T3 257 aa3.13□□□□□ -1.91
MSH6-209ENST00000538136 LCE2BO14633 110 aa3.12□□□□□ -1.91
MSH6-209ENST00000538136 KRTAP9-6A0A140TA67 174 aa3.08□□□□□ -1.92
MSH6-209ENST00000538136 KRTAP19-1Q8IUB9 90 aa3.08□□□□□ -1.92
MSH6-209ENST00000538136 KRTAP12-1P59990 96 aa3.08□□□□□ -1.92
MSH6-209ENST00000538136 SYNE1Q8NF91 8797 aaKnown RBP3.07□□□□□ -1.92
MSH6-209ENST00000538136 MACF1Q9UPN3 7388 aaKnown RBP3.07□□□□□ -1.92
MSH6-209ENST00000538136 KRTAP9-3Q9BYQ3 159 aa3.06□□□□□ -1.92
MSH6-209ENST00000538136 ROMO1P60602 79 aa3.04□□□□□ -1.92
MSH6-209ENST00000538136 KRTAP25-1Q3LHN0 102 aa3.03□□□□□ -1.92
MSH6-209ENST00000538136 SPRR2FQ96RM1 72 aa3.03□□□□□ -1.92
MSH6-209ENST00000538136 KRTAP8-1Q8IUC2 63 aa3.02□□□□□ -1.93
MSH6-209ENST00000538136 FCGBPQ9Y6R7 5405 aaPredicted RBP3□□□□□ -1.93
MSH6-209ENST00000538136 KRTAP4-8A0A0G2JLE6 195 aa3□□□□□ -1.93
MSH6-209ENST00000538136 KRTAP4-8Q9BYQ9 185 aa3□□□□□ -1.93
MSH6-209ENST00000538136 SPRR2GQ9BYE4 73 aa2.98□□□□□ -1.93
MSH6-209ENST00000538136 MT1BP07438 61 aa2.98□□□□□ -1.93
MSH6-209ENST00000538136 LUZP6Q538Z0 58 aa2.97□□□□□ -1.93
MSH6-209ENST00000538136 MUC12Q9UKN1 5478 aa2.97□□□□□ -1.93
MSH6-209ENST00000538136 KRTAP10-12P60413 245 aa2.95□□□□□ -1.94
MSH6-209ENST00000538136 KRTAP10-7P60409 375 aaPredicted RBP2.92□□□□□ -1.94
MSH6-209ENST00000538136 NDUFAF8A1L188 74 aa2.9□□□□□ -1.95
MSH6-209ENST00000538136 LCE3AQ5TA76 89 aa2.88□□□□□ -1.95
MSH6-209ENST00000538136 KRTAP9-7A8MTY7 169 aa2.87□□□□□ -1.95
MSH6-209ENST00000538136 MT1XP80297 61 aa2.87□□□□□ -1.95
MSH6-209ENST00000538136 LCE2DQ5TA82 110 aaPredicted RBP2.87□□□□□ -1.95
MSH6-209ENST00000538136 KRTAP19-8Q3LI54 63 aa2.85□□□□□ -1.95
MSH6-209ENST00000538136 SPRR2EP22531 72 aa2.84□□□□□ -1.95
MSH6-209ENST00000538136 SPRR2BP35325 72 aa2.84□□□□□ -1.95
MSH6-209ENST00000538136 SPRR2AP35326 72 aa2.84□□□□□ -1.95
MSH6-209ENST00000538136 KRTAP10-5P60370 271 aa2.84□□□□□ -1.95
MSH6-209ENST00000538136 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.82□□□□□ -1.96
MSH6-209ENST00000538136 MDN1Q9NU22 5596 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms