RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 MRPL34Q9BQ48 92 aaKnown RBP6.18□□□□□ -1.42
CLIP1-210ENST00000538120 KRTAP10-4P60372 401 aaPredicted RBP6.16□□□□□ -1.42
CLIP1-210ENST00000538120 Q5W150 140 aa6.16□□□□□ -1.42
CLIP1-210ENST00000538120 LINC01558Q9Y6Z2 57 aa6.15□□□□□ -1.42
CLIP1-210ENST00000538120 SPINK7P58062 85 aa6.14□□□□□ -1.43
CLIP1-210ENST00000538120 TYMSOSQ8TAI1 123 aa6.12□□□□□ -1.43
CLIP1-210ENST00000538120 RYR3Q15413 4870 aa6.11□□□□□ -1.43
CLIP1-210ENST00000538120 KRTAP13-3Q3SY46 172 aa6.09□□□□□ -1.43
CLIP1-210ENST00000538120 PKHD1L1Q86WI1 4243 aa6.09□□□□□ -1.43
CLIP1-210ENST00000538120 SPINK1P00995 79 aa6.07□□□□□ -1.44
CLIP1-210ENST00000538120 ROMO1P60602 79 aa6.05□□□□□ -1.44
CLIP1-210ENST00000538120 LINC00304Q8N9R0 145 aa6.04□□□□□ -1.44
CLIP1-210ENST00000538120 KRTAP4-11Q9BYQ6 195 aa6.04□□□□□ -1.44
CLIP1-210ENST00000538120 HSPG2P98160 4391 aa6.03□□□□□ -1.44
CLIP1-210ENST00000538120 LUZP6Q538Z0 58 aa6.03□□□□□ -1.44
CLIP1-210ENST00000538120 RPS29P62273 56 aaKnown RBP6.02□□□□□ -1.45
CLIP1-210ENST00000538120 RYR1P21817 5038 aa6□□□□□ -1.45
CLIP1-210ENST00000538120 ACYP2P14621 99 aa6□□□□□ -1.45
CLIP1-210ENST00000538120 KRTAP4-2Q9BYR5 136 aa5.99□□□□□ -1.45
CLIP1-210ENST00000538120 DMAC1Q96GE9 116 aa5.98□□□□□ -1.45
CLIP1-210ENST00000538120 KRTAP17-1Q9BYP8 105 aa5.97□□□□□ -1.45
CLIP1-210ENST00000538120 TNXBP22105 4242 aa5.94□□□□□ -1.46
CLIP1-210ENST00000538120 LRP1Q07954 4544 aaKnown RBP5.94□□□□□ -1.46
CLIP1-210ENST00000538120 Q5VSD8 79 aa5.93□□□□□ -1.46
CLIP1-210ENST00000538120 IGKV2-30P06310 120 aa5.93□□□□□ -1.46
CLIP1-210ENST00000538120 A0A1B0GU69 56 aa5.91□□□□□ -1.46
CLIP1-210ENST00000538120 FAT3Q8TDW7 4589 aa5.9□□□□□ -1.46
CLIP1-210ENST00000538120 KRTAP10-8P60410 259 aa5.9□□□□□ -1.46
CLIP1-210ENST00000538120 CSAG1Q6PB30 78 aa5.9□□□□□ -1.46
CLIP1-210ENST00000538120 KIAA1109Q2LD37 5005 aa5.9□□□□□ -1.46
CLIP1-210ENST00000538120 IGKV2D-30A0A075B6S6 120 aa5.89□□□□□ -1.47
CLIP1-210ENST00000538120 EPPK1P58107 5090 aaKnown RBP5.89□□□□□ -1.47
CLIP1-210ENST00000538120 KRTAP15-1Q3LI76 137 aa5.88□□□□□ -1.47
CLIP1-210ENST00000538120 MIR22HGQ0VDD5 57 aa5.88□□□□□ -1.47
CLIP1-210ENST00000538120 K7ERS5 55 aa5.87□□□□□ -1.47
CLIP1-210ENST00000538120 KRTAP4-5Q9BYR2 181 aa5.86□□□□□ -1.47
CLIP1-210ENST00000538120 SPATA8Q6RVD6 105 aa5.85□□□□□ -1.47
CLIP1-210ENST00000538120 C9orf92A6NGG3 77 aa5.85□□□□□ -1.47
CLIP1-210ENST00000538120 FLG2Q5D862 2391 aaPredicted RBP5.85□□□□□ -1.47
CLIP1-210ENST00000538120 P0C880 135 aa5.84□□□□□ -1.48
CLIP1-210ENST00000538120 A8MUU9 505 aa5.82□□□□□ -1.48
CLIP1-210ENST00000538120 C20orf166-AS1Q96NR2 134 aa5.82□□□□□ -1.48
CLIP1-210ENST00000538120 UQCR11O14957 56 aa5.81□□□□□ -1.48
CLIP1-210ENST00000538120 MT1HL1P0DM35 61 aa5.78□□□□□ -1.48
CLIP1-210ENST00000538120 MYCBP2O75592 4640 aa5.77□□□□□ -1.49
CLIP1-210ENST00000538120 CAMK2N1Q7Z7J9 78 aa5.75□□□□□ -1.49
CLIP1-210ENST00000538120 KRTAP25-1Q3LHN0 102 aa5.71□□□□□ -1.49
CLIP1-210ENST00000538120 DMBT1Q9UGM3 2413 aaPredicted RBP5.69□□□□□ -1.5
CLIP1-210ENST00000538120 H0YAA0 97 aa5.65□□□□□ -1.51
CLIP1-210ENST00000538120 RPL37P61927 97 aaKnown RBP5.64□□□□□ -1.51
CLIP1-210ENST00000538120 NDUFAF8A1L188 74 aa5.63□□□□□ -1.51
CLIP1-210ENST00000538120 ABCA13Q86UQ4 5058 aa5.61□□□□□ -1.51
CLIP1-210ENST00000538120 BIRC6Q9NR09 4857 aa5.57□□□□□ -1.52
CLIP1-210ENST00000538120 HERC2O95714 4834 aa5.57□□□□□ -1.52
CLIP1-210ENST00000538120 A0A1B0GU33 70 aa5.56□□□□□ -1.52
CLIP1-210ENST00000538120 COX6B2Q6YFQ2 88 aa5.54□□□□□ -1.52
CLIP1-210ENST00000538120 TPRXLQ17RH7 258 aa5.54□□□□□ -1.52
CLIP1-210ENST00000538120 H1FX-AS1Q4G0G2 97 aa5.53□□□□□ -1.52
CLIP1-210ENST00000538120 LPAP08519 4548 aa5.52□□□□□ -1.53
CLIP1-210ENST00000538120 LRP2P98164 4655 aa5.52□□□□□ -1.53
CLIP1-210ENST00000538120 CRIPTQ9P021 101 aa5.48□□□□□ -1.53
CLIP1-210ENST00000538120 SPINT4Q6UDR6 99 aa5.39□□□□□ -1.55
CLIP1-210ENST00000538120 KRTAP10-6P60371 365 aaPredicted RBP5.37□□□□□ -1.55
CLIP1-210ENST00000538120 KRTAP13-4Q3LI77 160 aa5.37□□□□□ -1.55
CLIP1-210ENST00000538120 S4R3F8 94 aa5.35□□□□□ -1.55
CLIP1-210ENST00000538120 MUC17Q685J3 4493 aa5.34□□□□□ -1.55
CLIP1-210ENST00000538120 A0A0D9SG42 100 aa5.34□□□□□ -1.55
CLIP1-210ENST00000538120 KRTAP4-1Q9BYQ7 146 aa5.32□□□□□ -1.56
CLIP1-210ENST00000538120 PCLOQ9Y6V0 5065 aa5.3□□□□□ -1.56
CLIP1-210ENST00000538120 HERC1Q15751 4861 aa5.26□□□□□ -1.57
CLIP1-210ENST00000538120 HMCN2Q8NDA2 5059 aa5.24□□□□□ -1.57
CLIP1-210ENST00000538120 C10orf95Q9H7T3 257 aa5.24□□□□□ -1.57
CLIP1-210ENST00000538120 KRTAP19-2Q3LHN2 52 aa5.21□□□□□ -1.58
CLIP1-210ENST00000538120 KRTAP12-2P59991 146 aa5.19□□□□□ -1.58
CLIP1-210ENST00000538120 MUC2Q02817 5179 aa5.14□□□□□ -1.59
CLIP1-210ENST00000538120 KRTAP12-1P59990 96 aa5.12□□□□□ -1.59
CLIP1-210ENST00000538120 R4GN34 69 aa5.11□□□□□ -1.59
CLIP1-210ENST00000538120 PRO2289Q9P1D8 64 aa5.07□□□□□ -1.6
CLIP1-210ENST00000538120 FLGP20930 4061 aaPredicted RBP5.06□□□□□ -1.6
CLIP1-210ENST00000538120 LCE1AQ5T7P2 110 aa5.05□□□□□ -1.6
CLIP1-210ENST00000538120 KRTAP5-3Q6L8H2 238 aa5.04□□□□□ -1.6
CLIP1-210ENST00000538120 M0QZ58 72 aa5□□□□□ -1.61
CLIP1-210ENST00000538120 RNF213Q63HN8 5207 aa5□□□□□ -1.61
CLIP1-210ENST00000538120 UBR4Q5T4S7 5183 aa4.97□□□□□ -1.61
CLIP1-210ENST00000538120 KRTAP9-8Q9BYQ0 159 aa4.93□□□□□ -1.62
CLIP1-210ENST00000538120 FAT4Q6V0I7 4981 aa4.91□□□□□ -1.62
CLIP1-210ENST00000538120 MT1HP80294 61 aa4.85□□□□□ -1.63
CLIP1-210ENST00000538120 PLAC4Q8WY50 150 aa4.81□□□□□ -1.64
CLIP1-210ENST00000538120 M0R2T5 61 aa4.76□□□□□ -1.65
CLIP1-210ENST00000538120 INE1O15225 51 aa4.71□□□□□ -1.66
CLIP1-210ENST00000538120 MT2AP02795 61 aa4.71□□□□□ -1.66
CLIP1-210ENST00000538120 MT1FP04733 61 aa4.7□□□□□ -1.66
CLIP1-210ENST00000538120 SPRR2GQ9BYE4 73 aa4.69□□□□□ -1.66
CLIP1-210ENST00000538120 KRTAP2-2Q9BYT5 123 aa4.67□□□□□ -1.66
CLIP1-210ENST00000538120 KRTAP10-10P60014 251 aa4.64□□□□□ -1.67
CLIP1-210ENST00000538120 PP632Q6XCG6 107 aa4.58□□□□□ -1.68
CLIP1-210ENST00000538120 KRTAP19-8Q3LI54 63 aa4.54□□□□□ -1.68
CLIP1-210ENST00000538120 MT1BP07438 61 aa4.49□□□□□ -1.69
CLIP1-210ENST00000538120 MT3P25713 68 aa4.49□□□□□ -1.69
CLIP1-210ENST00000538120 TNP1P09430 55 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms