RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 C10orf95Q9H7T3 257 aa7.76□□□□□ -1.17
SYNE1-236ENST00000537750 SPINT4Q6UDR6 99 aa7.75□□□□□ -1.17
SYNE1-236ENST00000537750 PKHD1L1Q86WI1 4243 aa7.75□□□□□ -1.17
SYNE1-236ENST00000537750 KRTAP3-3Q9BYR6 98 aa7.72□□□□□ -1.17
SYNE1-236ENST00000537750 KRTAP3-2Q9BYR7 98 aa7.69□□□□□ -1.18
SYNE1-236ENST00000537750 DYNC1H1Q14204 4646 aaKnown RBP7.69□□□□□ -1.18
SYNE1-236ENST00000537750 APOBP04114 4563 aaKnown RBP7.65□□□□□ -1.18
SYNE1-236ENST00000537750 HSPG2P98160 4391 aa7.62□□□□□ -1.19
SYNE1-236ENST00000537750 NDUFAF8A1L188 74 aa7.59□□□□□ -1.19
SYNE1-236ENST00000537750 KRTAP10-8P60410 259 aa7.59□□□□□ -1.19
SYNE1-236ENST00000537750 KRTAP12-2P59991 146 aa7.57□□□□□ -1.2
SYNE1-236ENST00000537750 KRTAP10-4P60372 401 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-236ENST00000537750 S4R3F8 94 aa7.57□□□□□ -1.2
SYNE1-236ENST00000537750 KRTAP15-1Q3LI76 137 aa7.57□□□□□ -1.2
SYNE1-236ENST00000537750 MYCBP2O75592 4640 aa7.56□□□□□ -1.2
SYNE1-236ENST00000537750 FAT3Q8TDW7 4589 aa7.54□□□□□ -1.2
SYNE1-236ENST00000537750 LRP1Q07954 4544 aaKnown RBP7.52□□□□□ -1.21
SYNE1-236ENST00000537750 KRTAP12-1P59990 96 aa7.45□□□□□ -1.22
SYNE1-236ENST00000537750 TNXBP22105 4242 aa7.41□□□□□ -1.22
SYNE1-236ENST00000537750 XP32Q5T750 250 aa7.39□□□□□ -1.23
SYNE1-236ENST00000537750 A0A1B0GVY2 172 aa7.39□□□□□ -1.23
SYNE1-236ENST00000537750 LPAP08519 4548 aa7.34□□□□□ -1.23
SYNE1-236ENST00000537750 KMT2CQ8NEZ4 4911 aaKnown RBP7.31□□□□□ -1.24
SYNE1-236ENST00000537750 M0QZ58 72 aa7.22□□□□□ -1.25
SYNE1-236ENST00000537750 RYR2Q92736 4967 aa7.2□□□□□ -1.26
SYNE1-236ENST00000537750 LRP2P98164 4655 aa7.19□□□□□ -1.26
SYNE1-236ENST00000537750 RYR3Q15413 4870 aa7.15□□□□□ -1.26
SYNE1-236ENST00000537750 Q5VSD8 79 aa7.13□□□□□ -1.27
SYNE1-236ENST00000537750 PLAC4Q8WY50 150 aa7.07□□□□□ -1.28
SYNE1-236ENST00000537750 R4GN34 69 aa7.06□□□□□ -1.28
SYNE1-236ENST00000537750 KRTAP17-1Q9BYP8 105 aa7.04□□□□□ -1.28
SYNE1-236ENST00000537750 LORP23490 312 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-236ENST00000537750 MT1HL1P0DM35 61 aa6.99□□□□□ -1.29
SYNE1-236ENST00000537750 RYR1P21817 5038 aa6.93□□□□□ -1.3
SYNE1-236ENST00000537750 KIAA1109Q2LD37 5005 aa6.9□□□□□ -1.3
SYNE1-236ENST00000537750 EPPK1P58107 5090 aaKnown RBP6.9□□□□□ -1.3
SYNE1-236ENST00000537750 LUZP6Q538Z0 58 aa6.89□□□□□ -1.31
SYNE1-236ENST00000537750 A0A0A0MQY5 61 aa6.88□□□□□ -1.31
SYNE1-236ENST00000537750 ABCA13Q86UQ4 5058 aa6.84□□□□□ -1.31
SYNE1-236ENST00000537750 MUC17Q685J3 4493 aa6.77□□□□□ -1.33
SYNE1-236ENST00000537750 CAMK2N1Q7Z7J9 78 aa6.77□□□□□ -1.33
SYNE1-236ENST00000537750 PP632Q6XCG6 107 aa6.73□□□□□ -1.33
SYNE1-236ENST00000537750 KRTAP4-1Q9BYQ7 146 aa6.7□□□□□ -1.34
SYNE1-236ENST00000537750 SEC61BP60468 96 aaKnown RBP6.63□□□□□ -1.35
SYNE1-236ENST00000537750 MUC2Q02817 5179 aa6.56□□□□□ -1.36
SYNE1-236ENST00000537750 KRTAP19-2Q3LHN2 52 aa6.55□□□□□ -1.36
SYNE1-236ENST00000537750 BIRC6Q9NR09 4857 aa6.54□□□□□ -1.36
SYNE1-236ENST00000537750 KRTAP4-5Q9BYR2 181 aa6.54□□□□□ -1.36
SYNE1-236ENST00000537750 TNP1P09430 55 aa6.51□□□□□ -1.37
SYNE1-236ENST00000537750 HERC2O95714 4834 aa6.45□□□□□ -1.38
SYNE1-236ENST00000537750 SPRR5A0A1B0GTR4 108 aa6.45□□□□□ -1.38
SYNE1-236ENST00000537750 FLGP20930 4061 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-236ENST00000537750 KRTAP23-1A1A580 65 aa6.36□□□□□ -1.39
SYNE1-236ENST00000537750 PCLOQ9Y6V0 5065 aa6.34□□□□□ -1.39
SYNE1-236ENST00000537750 J3QL48 77 aa6.29□□□□□ -1.4
SYNE1-236ENST00000537750 HERC1Q15751 4861 aa6.26□□□□□ -1.41
SYNE1-236ENST00000537750 FAT4Q6V0I7 4981 aa6.2□□□□□ -1.42
SYNE1-236ENST00000537750 LCE3AQ5TA76 89 aa6.19□□□□□ -1.42
SYNE1-236ENST00000537750 KRTAP19-1Q8IUB9 90 aa6.12□□□□□ -1.43
SYNE1-236ENST00000537750 SPRR2GQ9BYE4 73 aa6.09□□□□□ -1.43
SYNE1-236ENST00000537750 PRO2289Q9P1D8 64 aa6.07□□□□□ -1.44
SYNE1-236ENST00000537750 LCE2CQ5TA81 110 aa6.01□□□□□ -1.45
SYNE1-236ENST00000537750 HMCN2Q8NDA2 5059 aa6□□□□□ -1.45
SYNE1-236ENST00000537750 M0R2T5 61 aa5.95□□□□□ -1.46
SYNE1-236ENST00000537750 KRTAP8-1Q8IUC2 63 aa5.94□□□□□ -1.46
SYNE1-236ENST00000537750 INE1O15225 51 aa5.92□□□□□ -1.46
SYNE1-236ENST00000537750 UBR4Q5T4S7 5183 aa5.9□□□□□ -1.46
SYNE1-236ENST00000537750 KRTAP10-10P60014 251 aa5.88□□□□□ -1.47
SYNE1-236ENST00000537750 MT1FP04733 61 aa5.88□□□□□ -1.47
SYNE1-236ENST00000537750 RNF213Q63HN8 5207 aa5.85□□□□□ -1.47
SYNE1-236ENST00000537750 KRTAP12-3P60328 96 aa5.84□□□□□ -1.47
SYNE1-236ENST00000537750 MT2AP02795 61 aa5.83□□□□□ -1.48
SYNE1-236ENST00000537750 MT1HP80294 61 aa5.82□□□□□ -1.48
SYNE1-236ENST00000537750 KRTAP10-5P60370 271 aa5.81□□□□□ -1.48
SYNE1-236ENST00000537750 MT1XP80297 61 aa5.78□□□□□ -1.48
SYNE1-236ENST00000537750 KRTAP10-12P60413 245 aa5.78□□□□□ -1.48
SYNE1-236ENST00000537750 KRTAP19-8Q3LI54 63 aa5.75□□□□□ -1.49
SYNE1-236ENST00000537750 KRTAP9-8Q9BYQ0 159 aa5.75□□□□□ -1.49
SYNE1-236ENST00000537750 MT1BP07438 61 aa5.74□□□□□ -1.49
SYNE1-236ENST00000537750 KRTAP10-7P60409 375 aaPredicted RBP5.71□□□□□ -1.5
SYNE1-236ENST00000537750 KMT2DO14686 5537 aa5.51□□□□□ -1.53
SYNE1-236ENST00000537750 KRTAP19-5Q3LI72 72 aa5.51□□□□□ -1.53
SYNE1-236ENST00000537750 LCE3CQ5T5A8 94 aa5.5□□□□□ -1.53
SYNE1-236ENST00000537750 KRTAP9-3Q9BYQ3 159 aa5.48□□□□□ -1.53
SYNE1-236ENST00000537750 KRTAP9-6A8MVA2 160 aa5.43□□□□□ -1.54
SYNE1-236ENST00000537750 USH2AO75445 5202 aa5.4□□□□□ -1.55
SYNE1-236ENST00000537750 KRTAP4-8A0A0G2JLE6 195 aa5.33□□□□□ -1.56
SYNE1-236ENST00000537750 KRTAP4-8Q9BYQ9 185 aa5.33□□□□□ -1.56
SYNE1-236ENST00000537750 KRTAP4-7Q9BYR0 210 aa5.3□□□□□ -1.56
SYNE1-236ENST00000537750 KRTAP2-3P0C7H8 128 aa5.26□□□□□ -1.57
SYNE1-236ENST00000537750 KRTAP2-4Q9BYR9 128 aa5.26□□□□□ -1.57
SYNE1-236ENST00000537750 KRTAP2-1Q9BYU5 128 aa5.26□□□□□ -1.57
SYNE1-236ENST00000537750 LCE2BO14633 110 aa5.25□□□□□ -1.57
SYNE1-236ENST00000537750 LCE2AQ5TA79 106 aaPredicted RBP5.17□□□□□ -1.58
SYNE1-236ENST00000537750 KRTAP19-7Q3SYF9 63 aa5.15□□□□□ -1.58
SYNE1-236ENST00000537750 FSIP2Q5CZC0 6907 aa5.08□□□□□ -1.6
SYNE1-236ENST00000537750 MT1LQ93083 61 aa5.02□□□□□ -1.61
SYNE1-236ENST00000537750 MT1EP04732 61 aa4.95□□□□□ -1.62
SYNE1-236ENST00000537750 LCE2DQ5TA82 110 aaPredicted RBP4.93□□□□□ -1.62
SYNE1-236ENST00000537750 KRTAP19-4Q3LI73 84 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms