RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 KRTAP10-4P60372 401 aaPredicted RBP5.51□□□□□ -1.53
CLSTN3-207ENST00000537408 KRTAP3-2Q9BYR7 98 aa5.49□□□□□ -1.53
CLSTN3-207ENST00000537408 KRTAP12-1P59990 96 aa5.49□□□□□ -1.53
CLSTN3-207ENST00000537408 DNAH11Q96DT5 4516 aa5.49□□□□□ -1.53
CLSTN3-207ENST00000537408 BIRC6Q9NR09 4857 aa5.48□□□□□ -1.53
CLSTN3-207ENST00000537408 FRAS1Q86XX4 4008 aa5.47□□□□□ -1.53
CLSTN3-207ENST00000537408 R4GN34 69 aa5.46□□□□□ -1.54
CLSTN3-207ENST00000537408 STARD9Q9P2P6 4700 aa5.46□□□□□ -1.54
CLSTN3-207ENST00000537408 HECTD4Q9Y4D8 3996 aa5.44□□□□□ -1.54
CLSTN3-207ENST00000537408 M0QZ58 72 aa5.44□□□□□ -1.54
CLSTN3-207ENST00000537408 VPS13DQ5THJ4 4388 aa5.41□□□□□ -1.54
CLSTN3-207ENST00000537408 KRTAP3-3Q9BYR6 98 aa5.41□□□□□ -1.54
CLSTN3-207ENST00000537408 RYR2Q92736 4967 aa5.41□□□□□ -1.54
CLSTN3-207ENST00000537408 DNAH2Q9P225 4427 aa5.4□□□□□ -1.55
CLSTN3-207ENST00000537408 KIAA1109Q2LD37 5005 aa5.38□□□□□ -1.55
CLSTN3-207ENST00000537408 DNAH17Q9UFH2 4485 aa5.38□□□□□ -1.55
CLSTN3-207ENST00000537408 RYR3Q15413 4870 aa5.37□□□□□ -1.55
CLSTN3-207ENST00000537408 KMT2AQ03164 3969 aa5.37□□□□□ -1.55
CLSTN3-207ENST00000537408 DNAH5Q8TE73 4624 aa5.36□□□□□ -1.55
CLSTN3-207ENST00000537408 KRTAP17-1Q9BYP8 105 aa5.36□□□□□ -1.55
CLSTN3-207ENST00000537408 SACSQ9NZJ4 4579 aa5.36□□□□□ -1.55
CLSTN3-207ENST00000537408 KMT2CQ8NEZ4 4911 aaKnown RBP5.33□□□□□ -1.56
CLSTN3-207ENST00000537408 DYNC1H1Q14204 4646 aaKnown RBP5.32□□□□□ -1.56
CLSTN3-207ENST00000537408 PP632Q6XCG6 107 aa5.31□□□□□ -1.56
CLSTN3-207ENST00000537408 DNAH6Q9C0G6 4158 aa5.29□□□□□ -1.56
CLSTN3-207ENST00000537408 LRP1BQ9NZR2 4599 aa5.25□□□□□ -1.57
CLSTN3-207ENST00000537408 RYR1P21817 5038 aa5.24□□□□□ -1.57
CLSTN3-207ENST00000537408 PRO2289Q9P1D8 64 aa5.24□□□□□ -1.57
CLSTN3-207ENST00000537408 FAT2Q9NYQ8 4349 aa5.19□□□□□ -1.58
CLSTN3-207ENST00000537408 HERC2O95714 4834 aa5.18□□□□□ -1.58
CLSTN3-207ENST00000537408 PKD1P98161 4303 aa5.17□□□□□ -1.58
CLSTN3-207ENST00000537408 FAT1Q14517 4588 aa5.15□□□□□ -1.58
CLSTN3-207ENST00000537408 EPPK1P58107 5090 aaKnown RBP5.12□□□□□ -1.59
CLSTN3-207ENST00000537408 HYDINQ4G0P3 5121 aa5.12□□□□□ -1.59
CLSTN3-207ENST00000537408 INE1O15225 51 aa5.08□□□□□ -1.6
CLSTN3-207ENST00000537408 VPS13BQ7Z7G8 4022 aa5.07□□□□□ -1.6
CLSTN3-207ENST00000537408 APOBP04114 4563 aaKnown RBP5.05□□□□□ -1.6
CLSTN3-207ENST00000537408 KRTAP10-10P60014 251 aa5.04□□□□□ -1.6
CLSTN3-207ENST00000537408 PKHD1P08F94 4074 aa5□□□□□ -1.61
CLSTN3-207ENST00000537408 HSPG2P98160 4391 aa4.98□□□□□ -1.61
CLSTN3-207ENST00000537408 SPRR5A0A1B0GTR4 108 aa4.95□□□□□ -1.62
CLSTN3-207ENST00000537408 TNP1P09430 55 aa4.95□□□□□ -1.62
CLSTN3-207ENST00000537408 PCLOQ9Y6V0 5065 aa4.92□□□□□ -1.62
CLSTN3-207ENST00000537408 ABCA13Q86UQ4 5058 aa4.89□□□□□ -1.63
CLSTN3-207ENST00000537408 KRTAP23-1A1A580 65 aa4.89□□□□□ -1.63
CLSTN3-207ENST00000537408 PKHD1L1Q86WI1 4243 aa4.88□□□□□ -1.63
CLSTN3-207ENST00000537408 LRP1Q07954 4544 aaKnown RBP4.82□□□□□ -1.64
CLSTN3-207ENST00000537408 MYCBP2O75592 4640 aa4.81□□□□□ -1.64
CLSTN3-207ENST00000537408 HERC1Q15751 4861 aa4.77□□□□□ -1.65
CLSTN3-207ENST00000537408 KRTAP4-1Q9BYQ7 146 aa4.76□□□□□ -1.65
CLSTN3-207ENST00000537408 LORP23490 312 aaPredicted RBP4.74□□□□□ -1.65
CLSTN3-207ENST00000537408 MT1HP80294 61 aa4.73□□□□□ -1.65
CLSTN3-207ENST00000537408 TNXBP22105 4242 aa4.69□□□□□ -1.66
CLSTN3-207ENST00000537408 FAT3Q8TDW7 4589 aa4.68□□□□□ -1.66
CLSTN3-207ENST00000537408 LRP2P98164 4655 aa4.66□□□□□ -1.66
CLSTN3-207ENST00000537408 LPAP08519 4548 aa4.58□□□□□ -1.68
CLSTN3-207ENST00000537408 KRTAP9-2Q9BYQ4 174 aa4.55□□□□□ -1.68
CLSTN3-207ENST00000537408 HMCN2Q8NDA2 5059 aa4.52□□□□□ -1.69
CLSTN3-207ENST00000537408 MT2AP02795 61 aa4.5□□□□□ -1.69
CLSTN3-207ENST00000537408 LCE2AQ5TA79 106 aaPredicted RBP4.49□□□□□ -1.69
CLSTN3-207ENST00000537408 CRCT1Q9UGL9 99 aa4.47□□□□□ -1.69
CLSTN3-207ENST00000537408 LCE2CQ5TA81 110 aa4.46□□□□□ -1.69
CLSTN3-207ENST00000537408 RNF213Q63HN8 5207 aa4.46□□□□□ -1.7
CLSTN3-207ENST00000537408 KRTAP9-6A0A140TA67 174 aa4.44□□□□□ -1.7
CLSTN3-207ENST00000537408 FSIP2Q5CZC0 6907 aa4.43□□□□□ -1.7
CLSTN3-207ENST00000537408 LCE3AQ5TA76 89 aa4.43□□□□□ -1.7
CLSTN3-207ENST00000537408 UBR4Q5T4S7 5183 aa4.43□□□□□ -1.7
CLSTN3-207ENST00000537408 LCE2DQ5TA82 110 aaPredicted RBP4.42□□□□□ -1.7
CLSTN3-207ENST00000537408 MT1FP04733 61 aa4.41□□□□□ -1.7
CLSTN3-207ENST00000537408 KRTAP19-2Q3LHN2 52 aa4.35□□□□□ -1.71
CLSTN3-207ENST00000537408 KRTAP9-8Q9BYQ0 159 aa4.32□□□□□ -1.72
CLSTN3-207ENST00000537408 FAT4Q6V0I7 4981 aa4.29□□□□□ -1.72
CLSTN3-207ENST00000537408 KRTAP8-1Q8IUC2 63 aa4.29□□□□□ -1.72
CLSTN3-207ENST00000537408 MUC17Q685J3 4493 aa4.26□□□□□ -1.73
CLSTN3-207ENST00000537408 KRTAP10-12P60413 245 aa4.25□□□□□ -1.73
CLSTN3-207ENST00000537408 SPRR2GQ9BYE4 73 aa4.24□□□□□ -1.73
CLSTN3-207ENST00000537408 KRTAP12-3P60328 96 aa4.24□□□□□ -1.73
CLSTN3-207ENST00000537408 KRTAP9-3Q9BYQ3 159 aa4.21□□□□□ -1.73
CLSTN3-207ENST00000537408 KRTAP19-1Q8IUB9 90 aa4.2□□□□□ -1.74
CLSTN3-207ENST00000537408 KRTAP19-8Q3LI54 63 aa4.13□□□□□ -1.75
CLSTN3-207ENST00000537408 MUC2Q02817 5179 aa4.12□□□□□ -1.75
CLSTN3-207ENST00000537408 LCE2BO14633 110 aa4.12□□□□□ -1.75
CLSTN3-207ENST00000537408 FLGP20930 4061 aaPredicted RBP4.11□□□□□ -1.75
CLSTN3-207ENST00000537408 KRTAP19-6Q3LI70 58 aa4.07□□□□□ -1.76
CLSTN3-207ENST00000537408 KRTAP10-5P60370 271 aa4.07□□□□□ -1.76
CLSTN3-207ENST00000537408 KRTAP9-7A8MTY7 169 aa4.05□□□□□ -1.76
CLSTN3-207ENST00000537408 SPRR2FQ96RM1 72 aa4.04□□□□□ -1.76
CLSTN3-207ENST00000537408 MT1BP07438 61 aa4.01□□□□□ -1.77
CLSTN3-207ENST00000537408 OBSCNQ5VST9 7968 aa4.01□□□□□ -1.77
CLSTN3-207ENST00000537408 LCE3CQ5T5A8 94 aa3.99□□□□□ -1.77
CLSTN3-207ENST00000537408 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.98□□□□□ -1.77
CLSTN3-207ENST00000537408 SPRR2EP22531 72 aa3.92□□□□□ -1.78
CLSTN3-207ENST00000537408 SPRR2BP35325 72 aa3.92□□□□□ -1.78
CLSTN3-207ENST00000537408 SPRR2AP35326 72 aa3.92□□□□□ -1.78
CLSTN3-207ENST00000537408 KRTAP2-3P0C7H8 128 aa3.9□□□□□ -1.78
CLSTN3-207ENST00000537408 KRTAP2-4Q9BYR9 128 aa3.9□□□□□ -1.78
CLSTN3-207ENST00000537408 KRTAP2-1Q9BYU5 128 aa3.9□□□□□ -1.78
CLSTN3-207ENST00000537408 SYNE1Q8NF91 8797 aaKnown RBP3.89□□□□□ -1.79
CLSTN3-207ENST00000537408 MT1XP80297 61 aa3.88□□□□□ -1.79
CLSTN3-207ENST00000537408 KRTAP6-3Q3LI67 103 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms