RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 KRTAP13-3Q3SY46 172 aa5.63□□□□□ -1.51
CLIP1-209ENST00000537178 H0YAA0 97 aa5.6□□□□□ -1.51
CLIP1-209ENST00000537178 MEGF8Q7Z7M0 2845 aa5.58□□□□□ -1.52
CLIP1-209ENST00000537178 PRO2289Q9P1D8 64 aa5.58□□□□□ -1.52
CLIP1-209ENST00000537178 A0A1B0GVY2 172 aa5.58□□□□□ -1.52
CLIP1-209ENST00000537178 KRTAP1-4P0C5Y4 121 aa5.58□□□□□ -1.52
CLIP1-209ENST00000537178 FAT2Q9NYQ8 4349 aa5.56□□□□□ -1.52
CLIP1-209ENST00000537178 TPRXLQ17RH7 258 aa5.54□□□□□ -1.52
CLIP1-209ENST00000537178 KRTAP10-10P60014 251 aa5.54□□□□□ -1.52
CLIP1-209ENST00000537178 LRP1BQ9NZR2 4599 aa5.52□□□□□ -1.53
CLIP1-209ENST00000537178 VPS13BQ7Z7G8 4022 aa5.48□□□□□ -1.53
CLIP1-209ENST00000537178 HYDINQ4G0P3 5121 aa5.44□□□□□ -1.54
CLIP1-209ENST00000537178 PKHD1L1Q86WI1 4243 aa5.39□□□□□ -1.55
CLIP1-209ENST00000537178 SACSQ9NZJ4 4579 aa5.39□□□□□ -1.55
CLIP1-209ENST00000537178 TGP01266 2768 aa5.35□□□□□ -1.55
CLIP1-209ENST00000537178 PKHD1P08F94 4074 aa5.33□□□□□ -1.56
CLIP1-209ENST00000537178 DNHD1Q96M86 4753 aa5.28□□□□□ -1.56
CLIP1-209ENST00000537178 KRTAP13-4Q3LI77 160 aa5.26□□□□□ -1.57
CLIP1-209ENST00000537178 APOBP04114 4563 aaKnown RBP5.26□□□□□ -1.57
CLIP1-209ENST00000537178 KRTAP12-2P59991 146 aa5.24□□□□□ -1.57
CLIP1-209ENST00000537178 TNXBP22105 4242 aa5.19□□□□□ -1.58
CLIP1-209ENST00000537178 KRTAP12-1P59990 96 aa5.17□□□□□ -1.58
CLIP1-209ENST00000537178 HSPG2P98160 4391 aa5.12□□□□□ -1.59
CLIP1-209ENST00000537178 KRTAP15-1Q3LI76 137 aa5.1□□□□□ -1.59
CLIP1-209ENST00000537178 KRTAP3-1Q9BYR8 98 aa5.09□□□□□ -1.59
CLIP1-209ENST00000537178 DYNC1H1Q14204 4646 aaKnown RBP5.07□□□□□ -1.6
CLIP1-209ENST00000537178 LRP1Q07954 4544 aaKnown RBP5.07□□□□□ -1.6
CLIP1-209ENST00000537178 FAT3Q8TDW7 4589 aa5.06□□□□□ -1.6
CLIP1-209ENST00000537178 FAT1Q14517 4588 aa5.05□□□□□ -1.6
CLIP1-209ENST00000537178 INE1O15225 51 aa4.96□□□□□ -1.62
CLIP1-209ENST00000537178 KRTAP10-4P60372 401 aaPredicted RBP4.96□□□□□ -1.62
CLIP1-209ENST00000537178 KRTAP10-6P60371 365 aaPredicted RBP4.93□□□□□ -1.62
CLIP1-209ENST00000537178 MYCBP2O75592 4640 aa4.93□□□□□ -1.62
CLIP1-209ENST00000537178 LPAP08519 4548 aa4.92□□□□□ -1.62
CLIP1-209ENST00000537178 KRTAP3-3Q9BYR6 98 aa4.89□□□□□ -1.63
CLIP1-209ENST00000537178 RYR2Q92736 4967 aa4.88□□□□□ -1.63
CLIP1-209ENST00000537178 KRTAP3-2Q9BYR7 98 aa4.85□□□□□ -1.63
CLIP1-209ENST00000537178 KMT2CQ8NEZ4 4911 aaKnown RBP4.85□□□□□ -1.63
CLIP1-209ENST00000537178 KRTAP10-12P60413 245 aa4.8□□□□□ -1.64
CLIP1-209ENST00000537178 CRCT1Q9UGL9 99 aa4.76□□□□□ -1.65
CLIP1-209ENST00000537178 LRP2P98164 4655 aa4.7□□□□□ -1.66
CLIP1-209ENST00000537178 KRTAP12-3P60328 96 aa4.69□□□□□ -1.66
CLIP1-209ENST00000537178 RYR1P21817 5038 aa4.67□□□□□ -1.66
CLIP1-209ENST00000537178 RYR3Q15413 4870 aa4.67□□□□□ -1.66
CLIP1-209ENST00000537178 MT1HL1P0DM35 61 aa4.67□□□□□ -1.66
CLIP1-209ENST00000537178 KRTAP17-1Q9BYP8 105 aa4.66□□□□□ -1.66
CLIP1-209ENST00000537178 KRTAP23-1A1A580 65 aa4.66□□□□□ -1.66
CLIP1-209ENST00000537178 MUC17Q685J3 4493 aa4.65□□□□□ -1.67
CLIP1-209ENST00000537178 ABCA13Q86UQ4 5058 aa4.64□□□□□ -1.67
CLIP1-209ENST00000537178 LCE3AQ5TA76 89 aa4.55□□□□□ -1.68
CLIP1-209ENST00000537178 KIAA1109Q2LD37 5005 aa4.5□□□□□ -1.69
CLIP1-209ENST00000537178 KRTAP10-5P60370 271 aa4.49□□□□□ -1.69
CLIP1-209ENST00000537178 FLGP20930 4061 aaPredicted RBP4.46□□□□□ -1.7
CLIP1-209ENST00000537178 EPPK1P58107 5090 aaKnown RBP4.43□□□□□ -1.7
CLIP1-209ENST00000537178 KRTAP19-2Q3LHN2 52 aa4.43□□□□□ -1.7
CLIP1-209ENST00000537178 KRTAP8-1Q8IUC2 63 aa4.41□□□□□ -1.7
CLIP1-209ENST00000537178 KRTAP4-5Q9BYR2 181 aa4.38□□□□□ -1.71
CLIP1-209ENST00000537178 LORP23490 312 aaPredicted RBP4.37□□□□□ -1.71
CLIP1-209ENST00000537178 PCLOQ9Y6V0 5065 aa4.31□□□□□ -1.72
CLIP1-209ENST00000537178 MUC2Q02817 5179 aa4.3□□□□□ -1.72
CLIP1-209ENST00000537178 KRTAP4-1Q9BYQ7 146 aa4.25□□□□□ -1.73
CLIP1-209ENST00000537178 HERC1Q15751 4861 aa4.24□□□□□ -1.73
CLIP1-209ENST00000537178 BIRC6Q9NR09 4857 aa4.21□□□□□ -1.74
CLIP1-209ENST00000537178 SPRR5A0A1B0GTR4 108 aa4.18□□□□□ -1.74
CLIP1-209ENST00000537178 KRTAP10-7P60409 375 aaPredicted RBP4.14□□□□□ -1.75
CLIP1-209ENST00000537178 SPRR2GQ9BYE4 73 aa4.1□□□□□ -1.75
CLIP1-209ENST00000537178 MT2AP02795 61 aa4.09□□□□□ -1.76
CLIP1-209ENST00000537178 MT1HP80294 61 aa4.08□□□□□ -1.76
CLIP1-209ENST00000537178 KRTAP19-4Q3LI73 84 aa4.08□□□□□ -1.76
CLIP1-209ENST00000537178 HERC2O95714 4834 aa4.07□□□□□ -1.76
CLIP1-209ENST00000537178 SPRR2FQ96RM1 72 aa4.06□□□□□ -1.76
CLIP1-209ENST00000537178 FAT4Q6V0I7 4981 aa4.05□□□□□ -1.76
CLIP1-209ENST00000537178 KRTAP19-5Q3LI72 72 aa4.03□□□□□ -1.76
CLIP1-209ENST00000537178 LCE3CQ5T5A8 94 aa4.03□□□□□ -1.76
CLIP1-209ENST00000537178 HMCN2Q8NDA2 5059 aa4.02□□□□□ -1.77
CLIP1-209ENST00000537178 UBR4Q5T4S7 5183 aa4.02□□□□□ -1.77
CLIP1-209ENST00000537178 MT1FP04733 61 aa3.96□□□□□ -1.78
CLIP1-209ENST00000537178 LCE2CQ5TA81 110 aa3.96□□□□□ -1.78
CLIP1-209ENST00000537178 KRTAP19-1Q8IUB9 90 aa3.92□□□□□ -1.78
CLIP1-209ENST00000537178 RNF213Q63HN8 5207 aa3.81□□□□□ -1.8
CLIP1-209ENST00000537178 LCE3BQ5TA77 95 aa3.78□□□□□ -1.8
CLIP1-209ENST00000537178 KRTAP19-8Q3LI54 63 aa3.78□□□□□ -1.8
CLIP1-209ENST00000537178 KRTAP12-4P60329 112 aa3.77□□□□□ -1.81
CLIP1-209ENST00000537178 SPRR2EP22531 72 aa3.77□□□□□ -1.81
CLIP1-209ENST00000537178 SPRR2BP35325 72 aa3.77□□□□□ -1.81
CLIP1-209ENST00000537178 SPRR2AP35326 72 aa3.77□□□□□ -1.81
CLIP1-209ENST00000537178 KRTAP9-8Q9BYQ0 159 aa3.72□□□□□ -1.81
CLIP1-209ENST00000537178 MT1GP13640 62 aa3.68□□□□□ -1.82
CLIP1-209ENST00000537178 MT1XP80297 61 aa3.67□□□□□ -1.82
CLIP1-209ENST00000537178 MT1BP07438 61 aa3.67□□□□□ -1.82
CLIP1-209ENST00000537178 LCE2BO14633 110 aa3.66□□□□□ -1.82
CLIP1-209ENST00000537178 SPRR2DP22532 72 aa3.66□□□□□ -1.82
CLIP1-209ENST00000537178 LCE3DQ9BYE3 92 aa3.65□□□□□ -1.83
CLIP1-209ENST00000537178 LCE3EQ5T5B0 92 aa3.61□□□□□ -1.83
CLIP1-209ENST00000537178 KRTAP9-3Q9BYQ3 159 aa3.54□□□□□ -1.84
CLIP1-209ENST00000537178 SYNE1Q8NF91 8797 aaKnown RBP3.53□□□□□ -1.84
CLIP1-209ENST00000537178 KRTAP4-8A0A0G2JLE6 195 aa3.52□□□□□ -1.85
CLIP1-209ENST00000537178 KRTAP4-8Q9BYQ9 185 aa3.52□□□□□ -1.85
CLIP1-209ENST00000537178 KMT2DO14686 5537 aa3.51□□□□□ -1.85
CLIP1-209ENST00000537178 KRTAP9-6A0A140TA67 174 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms