RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 KRTAP3-2Q9BYR7 98 aa7.29□□□□□ -1.24
PCF11-204ENST00000530660 KRTAP3-3Q9BYR6 98 aa7.25□□□□□ -1.25
PCF11-204ENST00000530660 HYDINQ4G0P3 5121 aa7.19□□□□□ -1.26
PCF11-204ENST00000530660 XP32Q5T750 250 aa7.18□□□□□ -1.26
PCF11-204ENST00000530660 KRTAP12-1P59990 96 aa7.16□□□□□ -1.26
PCF11-204ENST00000530660 RPS29P62273 56 aaKnown RBP7.16□□□□□ -1.26
PCF11-204ENST00000530660 SACSQ9NZJ4 4579 aa7.08□□□□□ -1.28
PCF11-204ENST00000530660 SMR3BP02814 79 aaPredicted RBP7.08□□□□□ -1.28
PCF11-204ENST00000530660 PKHD1P08F94 4074 aa7.08□□□□□ -1.28
PCF11-204ENST00000530660 PLAC4Q8WY50 150 aa7.06□□□□□ -1.28
PCF11-204ENST00000530660 PKHD1L1Q86WI1 4243 aa7.01□□□□□ -1.29
PCF11-204ENST00000530660 FAT1Q14517 4588 aa7□□□□□ -1.29
PCF11-204ENST00000530660 KRTAP10-8P60410 259 aa7□□□□□ -1.29
PCF11-204ENST00000530660 DNHD1Q96M86 4753 aa6.94□□□□□ -1.3
PCF11-204ENST00000530660 DYNC1H1Q14204 4646 aaKnown RBP6.93□□□□□ -1.3
PCF11-204ENST00000530660 APOBP04114 4563 aaKnown RBP6.91□□□□□ -1.3
PCF11-204ENST00000530660 HSPG2P98160 4391 aa6.89□□□□□ -1.31
PCF11-204ENST00000530660 KRTAP10-4P60372 401 aaPredicted RBP6.86□□□□□ -1.31
PCF11-204ENST00000530660 FAT3Q8TDW7 4589 aa6.82□□□□□ -1.32
PCF11-204ENST00000530660 MYCBP2O75592 4640 aa6.81□□□□□ -1.32
PCF11-204ENST00000530660 M0QZ58 72 aa6.81□□□□□ -1.32
PCF11-204ENST00000530660 LRP1Q07954 4544 aaKnown RBP6.8□□□□□ -1.32
PCF11-204ENST00000530660 SEC61BP60468 96 aaKnown RBP6.73□□□□□ -1.33
PCF11-204ENST00000530660 TNXBP22105 4242 aa6.68□□□□□ -1.34
PCF11-204ENST00000530660 LPAP08519 4548 aa6.66□□□□□ -1.34
PCF11-204ENST00000530660 A0A1B0GVY2 172 aa6.63□□□□□ -1.35
PCF11-204ENST00000530660 R4GN34 69 aa6.62□□□□□ -1.35
PCF11-204ENST00000530660 KRTAP21-3Q3LHN1 58 aa6.58□□□□□ -1.36
PCF11-204ENST00000530660 KMT2CQ8NEZ4 4911 aaKnown RBP6.53□□□□□ -1.36
PCF11-204ENST00000530660 LORP23490 312 aaPredicted RBP6.51□□□□□ -1.37
PCF11-204ENST00000530660 PP632Q6XCG6 107 aa6.5□□□□□ -1.37
PCF11-204ENST00000530660 LRP2P98164 4655 aa6.48□□□□□ -1.37
PCF11-204ENST00000530660 Q5VSD8 79 aa6.43□□□□□ -1.38
PCF11-204ENST00000530660 RYR2Q92736 4967 aa6.4□□□□□ -1.39
PCF11-204ENST00000530660 CAMK2N1Q7Z7J9 78 aa6.39□□□□□ -1.39
PCF11-204ENST00000530660 PRO2289Q9P1D8 64 aa6.36□□□□□ -1.39
PCF11-204ENST00000530660 SPRR5A0A1B0GTR4 108 aa6.36□□□□□ -1.39
PCF11-204ENST00000530660 KRTAP17-1Q9BYP8 105 aa6.33□□□□□ -1.4
PCF11-204ENST00000530660 MT1HL1P0DM35 61 aa6.31□□□□□ -1.4
PCF11-204ENST00000530660 RYR1P21817 5038 aa6.23□□□□□ -1.41
PCF11-204ENST00000530660 KIAA1109Q2LD37 5005 aa6.17□□□□□ -1.42
PCF11-204ENST00000530660 ABCA13Q86UQ4 5058 aa6.16□□□□□ -1.42
PCF11-204ENST00000530660 TNP1P09430 55 aa6.16□□□□□ -1.42
PCF11-204ENST00000530660 J3QL48 77 aa6.14□□□□□ -1.43
PCF11-204ENST00000530660 RYR3Q15413 4870 aa6.12□□□□□ -1.43
PCF11-204ENST00000530660 MUC17Q685J3 4493 aa6.12□□□□□ -1.43
PCF11-204ENST00000530660 INE1O15225 51 aa6.08□□□□□ -1.44
PCF11-204ENST00000530660 KRTAP4-1Q9BYQ7 146 aa6.06□□□□□ -1.44
PCF11-204ENST00000530660 KRTAP23-1A1A580 65 aa6.02□□□□□ -1.45
PCF11-204ENST00000530660 KRTAP19-2Q3LHN2 52 aa5.94□□□□□ -1.46
PCF11-204ENST00000530660 MUC2Q02817 5179 aa5.88□□□□□ -1.47
PCF11-204ENST00000530660 KRTAP4-5Q9BYR2 181 aa5.87□□□□□ -1.47
PCF11-204ENST00000530660 EPPK1P58107 5090 aaKnown RBP5.84□□□□□ -1.47
PCF11-204ENST00000530660 LCE3AQ5TA76 89 aa5.84□□□□□ -1.48
PCF11-204ENST00000530660 FLGP20930 4061 aaPredicted RBP5.76□□□□□ -1.49
PCF11-204ENST00000530660 PCLOQ9Y6V0 5065 aa5.73□□□□□ -1.49
PCF11-204ENST00000530660 HERC1Q15751 4861 aa5.68□□□□□ -1.5
PCF11-204ENST00000530660 KRTAP8-1Q8IUC2 63 aa5.57□□□□□ -1.52
PCF11-204ENST00000530660 FAT4Q6V0I7 4981 aa5.56□□□□□ -1.52
PCF11-204ENST00000530660 KRTAP19-1Q8IUB9 90 aa5.55□□□□□ -1.52
PCF11-204ENST00000530660 BIRC6Q9NR09 4857 aa5.55□□□□□ -1.52
PCF11-204ENST00000530660 KRTAP10-12P60413 245 aa5.54□□□□□ -1.52
PCF11-204ENST00000530660 SPRR2GQ9BYE4 73 aa5.54□□□□□ -1.52
PCF11-204ENST00000530660 HERC2O95714 4834 aa5.54□□□□□ -1.52
PCF11-204ENST00000530660 KRTAP12-3P60328 96 aa5.48□□□□□ -1.53
PCF11-204ENST00000530660 KRTAP10-10P60014 251 aa5.46□□□□□ -1.53
PCF11-204ENST00000530660 LCE2CQ5TA81 110 aa5.43□□□□□ -1.54
PCF11-204ENST00000530660 M0R2T5 61 aa5.38□□□□□ -1.55
PCF11-204ENST00000530660 HMCN2Q8NDA2 5059 aa5.36□□□□□ -1.55
PCF11-204ENST00000530660 UBR4Q5T4S7 5183 aa5.33□□□□□ -1.56
PCF11-204ENST00000530660 MT1FP04733 61 aa5.32□□□□□ -1.56
PCF11-204ENST00000530660 RNF213Q63HN8 5207 aa5.29□□□□□ -1.56
PCF11-204ENST00000530660 KRTAP10-5P60370 271 aa5.28□□□□□ -1.56
PCF11-204ENST00000530660 MT2AP02795 61 aa5.28□□□□□ -1.56
PCF11-204ENST00000530660 MT1XP80297 61 aa5.26□□□□□ -1.57
PCF11-204ENST00000530660 MT1HP80294 61 aa5.25□□□□□ -1.57
PCF11-204ENST00000530660 KRTAP10-7P60409 375 aaPredicted RBP5.21□□□□□ -1.58
PCF11-204ENST00000530660 MT1BP07438 61 aa5.21□□□□□ -1.58
PCF11-204ENST00000530660 KRTAP19-8Q3LI54 63 aa5.21□□□□□ -1.58
PCF11-204ENST00000530660 KRTAP9-8Q9BYQ0 159 aa5.19□□□□□ -1.58
PCF11-204ENST00000530660 LCE3CQ5T5A8 94 aa5.18□□□□□ -1.58
PCF11-204ENST00000530660 KRTAP9-6A8MVA2 160 aa5.17□□□□□ -1.58
PCF11-204ENST00000530660 KRTAP2-3P0C7H8 128 aa5.08□□□□□ -1.6
PCF11-204ENST00000530660 KRTAP2-4Q9BYR9 128 aa5.08□□□□□ -1.6
PCF11-204ENST00000530660 KRTAP2-1Q9BYU5 128 aa5.08□□□□□ -1.6
PCF11-204ENST00000530660 KRTAP19-5Q3LI72 72 aa5.07□□□□□ -1.6
PCF11-204ENST00000530660 KMT2DO14686 5537 aa5.04□□□□□ -1.6
PCF11-204ENST00000530660 KRTAP4-7Q9BYR0 210 aa4.95□□□□□ -1.62
PCF11-204ENST00000530660 KRTAP9-3Q9BYQ3 159 aa4.94□□□□□ -1.62
PCF11-204ENST00000530660 FSIP2Q5CZC0 6907 aa4.88□□□□□ -1.63
PCF11-204ENST00000530660 USH2AO75445 5202 aa4.84□□□□□ -1.63
PCF11-204ENST00000530660 KRTAP4-8A0A0G2JLE6 195 aa4.84□□□□□ -1.63
PCF11-204ENST00000530660 KRTAP4-8Q9BYQ9 185 aa4.84□□□□□ -1.63
PCF11-204ENST00000530660 KRTAP12-4P60329 112 aa4.75□□□□□ -1.65
PCF11-204ENST00000530660 LCE2BO14633 110 aa4.73□□□□□ -1.65
PCF11-204ENST00000530660 KRTAP19-7Q3SYF9 63 aa4.69□□□□□ -1.66
PCF11-204ENST00000530660 LOC100996750A0A140TA64 210 aa4.57□□□□□ -1.68
PCF11-204ENST00000530660 MT1LQ93083 61 aa4.57□□□□□ -1.68
PCF11-204ENST00000530660 MT1EP04732 61 aa4.5□□□□□ -1.69
PCF11-204ENST00000530660 KRTAP9-6A0A140TA67 174 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms