RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 KRTAP10-5P60370 271 aa4.74□□□□□ -1.65
CPSF1-203ENST00000527916 CYP4F30PQ9H0H9 118 aa4.74□□□□□ -1.65
CPSF1-203ENST00000527916 SPRR2GQ9BYE4 73 aa4.73□□□□□ -1.65
CPSF1-203ENST00000527916 K7ERU9 68 aa4.72□□□□□ -1.65
CPSF1-203ENST00000527916 TRAV22A0A0B4J277 110 aa4.71□□□□□ -1.66
CPSF1-203ENST00000527916 LOC101927531A0A1B0GV80 90 aa4.71□□□□□ -1.66
CPSF1-203ENST00000527916 KRTAP19-8Q3LI54 63 aa4.71□□□□□ -1.66
CPSF1-203ENST00000527916 KRTAP3-3Q9BYR6 98 aa4.71□□□□□ -1.66
CPSF1-203ENST00000527916 FAM240AA0A1B0GVK7 77 aa4.7□□□□□ -1.66
CPSF1-203ENST00000527916 KLKP1Q107X0 134 aa4.69□□□□□ -1.66
CPSF1-203ENST00000527916 ATP5EP2Q5VTU8 51 aa4.69□□□□□ -1.66
CPSF1-203ENST00000527916 KRTAP2-2Q9BYT5 123 aa4.68□□□□□ -1.66
CPSF1-203ENST00000527916 KRTAP2-1Q9BYU5 128 aa4.68□□□□□ -1.66
CPSF1-203ENST00000527916 SPRR2EP22531 72 aa4.67□□□□□ -1.66
CPSF1-203ENST00000527916 SPRR2BP35325 72 aa4.67□□□□□ -1.66
CPSF1-203ENST00000527916 SPRR2AP35326 72 aa4.67□□□□□ -1.66
CPSF1-203ENST00000527916 J3QR89 54 aa4.66□□□□□ -1.66
CPSF1-203ENST00000527916 UQCRQO14949 82 aa4.66□□□□□ -1.66
CPSF1-203ENST00000527916 ATOX1O00244 68 aa4.65□□□□□ -1.67
CPSF1-203ENST00000527916 PCP4P48539 62 aa4.65□□□□□ -1.67
CPSF1-203ENST00000527916 IMUPQ9GZP8 106 aa4.65□□□□□ -1.67
CPSF1-203ENST00000527916 CRIPTQ9P021 101 aa4.65□□□□□ -1.67
CPSF1-203ENST00000527916 SPRR2FQ96RM1 72 aa4.64□□□□□ -1.67
CPSF1-203ENST00000527916 A0A087WVE0 104 aa4.63□□□□□ -1.67
CPSF1-203ENST00000527916 HIST1H4AP62805 103 aaKnown RBP4.63□□□□□ -1.67
CPSF1-203ENST00000527916 H0Y9P7 68 aa4.61□□□□□ -1.67
CPSF1-203ENST00000527916 H0YAA0 97 aa4.61□□□□□ -1.67
CPSF1-203ENST00000527916 NDUFC1O43677 76 aa4.6□□□□□ -1.67
CPSF1-203ENST00000527916 LINC00643Q86TS7 51 aa4.6□□□□□ -1.67
CPSF1-203ENST00000527916 A8MUN3 132 aa4.59□□□□□ -1.67
CPSF1-203ENST00000527916 SCGB1A1P11684 91 aa4.58□□□□□ -1.68
CPSF1-203ENST00000527916 GPR98Q8WXG9 6306 aa4.56□□□□□ -1.68
CPSF1-203ENST00000527916 LINC00208Q96KT6 92 aa4.54□□□□□ -1.68
CPSF1-203ENST00000527916 SPRR2DP22532 72 aa4.53□□□□□ -1.68
CPSF1-203ENST00000527916 LCE1AQ5T7P2 110 aa4.53□□□□□ -1.68
CPSF1-203ENST00000527916 OCR1Q9BZK8 76 aa4.53□□□□□ -1.68
CPSF1-203ENST00000527916 MP68P56378 58 aa4.52□□□□□ -1.69
CPSF1-203ENST00000527916 KRTAP8-1Q8IUC2 63 aa4.5□□□□□ -1.69
CPSF1-203ENST00000527916 H3BPC8 53 aa4.49□□□□□ -1.69
CPSF1-203ENST00000527916 ADM2Q7Z4H4 148 aa4.49□□□□□ -1.69
CPSF1-203ENST00000527916 PRO2289Q9P1D8 64 aa4.47□□□□□ -1.69
CPSF1-203ENST00000527916 MT-ATP8P03928 68 aa4.45□□□□□ -1.7
CPSF1-203ENST00000527916 LCE3BQ5TA77 95 aa4.43□□□□□ -1.7
CPSF1-203ENST00000527916 C20orf197Q8N268 126 aa4.42□□□□□ -1.7
CPSF1-203ENST00000527916 DMAC1Q96GE9 116 aa4.42□□□□□ -1.7
CPSF1-203ENST00000527916 PLAC4Q8WY50 150 aa4.41□□□□□ -1.7
CPSF1-203ENST00000527916 R4GN34 69 aa4.4□□□□□ -1.71
CPSF1-203ENST00000527916 MT1XP80297 61 aa4.39□□□□□ -1.71
CPSF1-203ENST00000527916 P0C880 135 aa4.38□□□□□ -1.71
CPSF1-203ENST00000527916 ANAPC13Q9BS18 74 aa4.37□□□□□ -1.71
CPSF1-203ENST00000527916 KRTAP3-2Q9BYR7 98 aa4.36□□□□□ -1.71
CPSF1-203ENST00000527916 TRAV7A0A075B6U4 112 aa4.35□□□□□ -1.71
CPSF1-203ENST00000527916 KRTAP12-2P59991 146 aa4.35□□□□□ -1.71
CPSF1-203ENST00000527916 M0QZ58 72 aa4.34□□□□□ -1.71
CPSF1-203ENST00000527916 ACYP2P14621 99 aa4.32□□□□□ -1.72
CPSF1-203ENST00000527916 SMIM20Q8N5G0 67 aa4.3□□□□□ -1.72
CPSF1-203ENST00000527916 DSTQ03001 7570 aaKnown RBP4.3□□□□□ -1.72
CPSF1-203ENST00000527916 KRTAP4-8A0A0G2JLE6 195 aa4.29□□□□□ -1.72
CPSF1-203ENST00000527916 KRTAP4-8Q9BYQ9 185 aa4.29□□□□□ -1.72
CPSF1-203ENST00000527916 SPTSSBQ8NFR3 76 aa4.28□□□□□ -1.72
CPSF1-203ENST00000527916 CCDC179H3BU77 68 aa4.26□□□□□ -1.73
CPSF1-203ENST00000527916 LINC01554Q52M75 96 aa4.26□□□□□ -1.73
CPSF1-203ENST00000527916 COX7CP15954 63 aa4.22□□□□□ -1.73
CPSF1-203ENST00000527916 KRTAP4-9Q9BYQ8 210 aa4.21□□□□□ -1.74
CPSF1-203ENST00000527916 CHKB-CPT1BH3BT56 60 aa4.2□□□□□ -1.74
CPSF1-203ENST00000527916 KRTAP10-12P60413 245 aa4.19□□□□□ -1.74
CPSF1-203ENST00000527916 SERP2Q8N6R1 65 aa4.19□□□□□ -1.74
CPSF1-203ENST00000527916 SPANXA2-OT1Q8N9U9 137 aa4.18□□□□□ -1.74
CPSF1-203ENST00000527916 KRTAP10-7P60409 375 aaPredicted RBP4.17□□□□□ -1.74
CPSF1-203ENST00000527916 SNURFQ9Y675 71 aa4.15□□□□□ -1.75
CPSF1-203ENST00000527916 TMEM258P61165 79 aa4.12□□□□□ -1.75
CPSF1-203ENST00000527916 RPS28P62857 69 aaKnown RBP4.11□□□□□ -1.75
CPSF1-203ENST00000527916 HMCN1Q96RW7 5635 aa4.07□□□□□ -1.76
CPSF1-203ENST00000527916 KRTAP13-4Q3LI77 160 aa4.07□□□□□ -1.76
CPSF1-203ENST00000527916 LCE1DQ5T752 114 aa4.07□□□□□ -1.76
CPSF1-203ENST00000527916 AHNAK2Q8IVF2 5795 aa4.07□□□□□ -1.76
CPSF1-203ENST00000527916 CYSTM1Q9H1C7 97 aa4.04□□□□□ -1.76
CPSF1-203ENST00000527916 ATP5EP56381 51 aaPredicted RBP4.02□□□□□ -1.77
CPSF1-203ENST00000527916 LCE5AQ5TCM9 118 aa4.02□□□□□ -1.77
CPSF1-203ENST00000527916 CAMK2N1Q7Z7J9 78 aa4.02□□□□□ -1.77
CPSF1-203ENST00000527916 COA5Q86WW8 74 aa4.02□□□□□ -1.77
CPSF1-203ENST00000527916 H7BZZ5 65 aa4.01□□□□□ -1.77
CPSF1-203ENST00000527916 SVIPQ8NHG7 77 aa4.01□□□□□ -1.77
CPSF1-203ENST00000527916 SERP1Q9Y6X1 66 aa4.01□□□□□ -1.77
CPSF1-203ENST00000527916 SEC61GP60059 68 aa4□□□□□ -1.77
CPSF1-203ENST00000527916 MT4P47944 62 aa3.99□□□□□ -1.77
CPSF1-203ENST00000527916 LCE4AQ5TA78 99 aa3.98□□□□□ -1.77
CPSF1-203ENST00000527916 KRTAP5-10Q6L8G5 202 aa3.98□□□□□ -1.77
CPSF1-203ENST00000527916 KRTAP19-3Q7Z4W3 81 aa3.95□□□□□ -1.78
CPSF1-203ENST00000527916 SMIM26A0A096LP01 95 aa3.94□□□□□ -1.78
CPSF1-203ENST00000527916 A0A1B0GU33 70 aa3.94□□□□□ -1.78
CPSF1-203ENST00000527916 KRTAP19-7Q3SYF9 63 aa3.93□□□□□ -1.78
CPSF1-203ENST00000527916 SPATA8Q6RVD6 105 aa3.92□□□□□ -1.78
CPSF1-203ENST00000527916 A0A0D9SG42 100 aa3.91□□□□□ -1.78
CPSF1-203ENST00000527916 KRTAP5-7Q6L8G8 165 aa3.9□□□□□ -1.79
CPSF1-203ENST00000527916 MT1EP04732 61 aa3.89□□□□□ -1.79
CPSF1-203ENST00000527916 KRTAP12-1P59990 96 aa3.88□□□□□ -1.79
CPSF1-203ENST00000527916 SPINT4Q6UDR6 99 aa3.88□□□□□ -1.79
CPSF1-203ENST00000527916 PP632Q6XCG6 107 aa3.84□□□□□ -1.79
CPSF1-203ENST00000527916 A0A1B0GU69 56 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms