RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 H1FX-AS1Q4G0G2 97 aa1.48□□□□□ -2.17
USP47-204ENST00000525078 CHD8Q9HCK8 2581 aa1.48□□□□□ -2.17
USP47-204ENST00000525078 NBEAL2Q6ZNJ1 2754 aa1.47□□□□□ -2.17
USP47-204ENST00000525078 ACACBO00763 2458 aa1.47□□□□□ -2.17
USP47-204ENST00000525078 PKD1L2Q7Z442 2459 aa1.47□□□□□ -2.17
USP47-204ENST00000525078 FLNAP21333 2647 aaKnown RBP1.47□□□□□ -2.17
USP47-204ENST00000525078 UNC79Q9P2D8 2635 aa1.47□□□□□ -2.17
USP47-204ENST00000525078 CACNA1AO00555 2505 aa1.47□□□□□ -2.17
USP47-204ENST00000525078 CSMD2Q7Z408 3487 aa1.47□□□□□ -2.17
USP47-204ENST00000525078 NIPBLQ6KC79 2804 aaeCLIP1.47□□□□□ -2.17
USP47-204ENST00000525078 SONP18583 2426 aaKnown RBP1.46□□□□□ -2.18
USP47-204ENST00000525078 FLNCQ14315 2725 aa1.46□□□□□ -2.18
USP47-204ENST00000525078 VWFP04275 2813 aa1.45□□□□□ -2.18
USP47-204ENST00000525078 TENM4Q6N022 2769 aa1.45□□□□□ -2.18
USP47-204ENST00000525078 HMCN1Q96RW7 5635 aa1.45□□□□□ -2.18
USP47-204ENST00000525078 SPINK6Q6UWN8 80 aa1.45□□□□□ -2.18
USP47-204ENST00000525078 MEGF8Q7Z7M0 2845 aa1.45□□□□□ -2.18
USP47-204ENST00000525078 IGSF10Q6WRI0 2623 aa1.45□□□□□ -2.18
USP47-204ENST00000525078 PDZD2O15018 2839 aa1.44□□□□□ -2.18
USP47-204ENST00000525078 POLQO75417 2590 aa1.44□□□□□ -2.18
USP47-204ENST00000525078 MYO18BQ8IUG5 2567 aa1.44□□□□□ -2.18
USP47-204ENST00000525078 SPINK1P00995 79 aa1.44□□□□□ -2.18
USP47-204ENST00000525078 MTORP42345 2549 aa1.44□□□□□ -2.18
USP47-204ENST00000525078 CCDC168Q8NDH2 2452 aa1.43□□□□□ -2.18
USP47-204ENST00000525078 ABCA12Q86UK0 2595 aa1.43□□□□□ -2.18
USP47-204ENST00000525078 F8P00451 2351 aa1.43□□□□□ -2.18
USP47-204ENST00000525078 HECTD1Q9ULT8 2610 aa1.43□□□□□ -2.18
USP47-204ENST00000525078 CENPEQ02224 2701 aa1.42□□□□□ -2.18
USP47-204ENST00000525078 VPS13DQ5THJ4 4388 aa1.42□□□□□ -2.18
USP47-204ENST00000525078 NSD1Q96L73 2696 aaPredicted RBP1.42□□□□□ -2.18
USP47-204ENST00000525078 TENM3Q9P273 2699 aa1.42□□□□□ -2.18
USP47-204ENST00000525078 SETD2Q9BYW2 2564 aaPredicted RBP1.41□□□□□ -2.18
USP47-204ENST00000525078 ZNF469Q96JG9 3925 aaPredicted RBP1.41□□□□□ -2.18
USP47-204ENST00000525078 DNAH3Q8TD57 4116 aa1.41□□□□□ -2.18
USP47-204ENST00000525078 TEP1Q99973 2627 aaKnown RBP1.4□□□□□ -2.18
USP47-204ENST00000525078 PKD1L1Q8TDX9 2849 aa1.4□□□□□ -2.18
USP47-204ENST00000525078 SRRM2Q9UQ35 2752 aaKnown RBP1.4□□□□□ -2.19
USP47-204ENST00000525078 CUBNO60494 3623 aa1.4□□□□□ -2.19
USP47-204ENST00000525078 SMR3AQ99954 134 aa1.39□□□□□ -2.19
USP47-204ENST00000525078 USP24Q9UPU5 2620 aa1.39□□□□□ -2.19
USP47-204ENST00000525078 ANK2Q01484 3957 aa1.39□□□□□ -2.19
USP47-204ENST00000525078 TENM1Q9UKZ4 2725 aa1.38□□□□□ -2.19
USP47-204ENST00000525078 DYNC2H1Q8NCM8 4307 aaKnown RBP1.38□□□□□ -2.19
USP47-204ENST00000525078 MAST4O15021 2626 aa1.38□□□□□ -2.19
USP47-204ENST00000525078 PRKDCP78527 4128 aaKnown RBP1.38□□□□□ -2.19
USP47-204ENST00000525078 TRRAPQ9Y4A5 3859 aa1.37□□□□□ -2.19
USP47-204ENST00000525078 M0QZ58 72 aa1.37□□□□□ -2.19
USP47-204ENST00000525078 S4R3F8 94 aa1.37□□□□□ -2.19
USP47-204ENST00000525078 ACANP16112 2415 aa1.37□□□□□ -2.19
USP47-204ENST00000525078 ATRQ13535 2644 aa1.36□□□□□ -2.19
USP47-204ENST00000525078 DNAH8Q96JB1 4490 aa1.35□□□□□ -2.19
USP47-204ENST00000525078 LYSTQ99698 3801 aa1.35□□□□□ -2.19
USP47-204ENST00000525078 FASNP49327 2511 aaKnown RBP1.35□□□□□ -2.19
USP47-204ENST00000525078 DNAH9Q9NYC9 4486 aa1.35□□□□□ -2.19
USP47-204ENST00000525078 DNAH10Q8IVF4 4471 aa1.35□□□□□ -2.19
USP47-204ENST00000525078 ITPR2Q14571 2701 aa1.35□□□□□ -2.19
USP47-204ENST00000525078 FRAS1Q86XX4 4008 aa1.35□□□□□ -2.19
USP47-204ENST00000525078 DNAH17Q9UFH2 4485 aa1.34□□□□□ -2.19
USP47-204ENST00000525078 HUWE1Q7Z6Z7 4374 aaKnown RBP1.34□□□□□ -2.19
USP47-204ENST00000525078 DNAH7Q8WXX0 4024 aa1.34□□□□□ -2.19
USP47-204ENST00000525078 TGP01266 2768 aa1.34□□□□□ -2.2
USP47-204ENST00000525078 FLNBO75369 2602 aaKnown RBP1.33□□□□□ -2.2
USP47-204ENST00000525078 NBEAL1Q6ZS30 2694 aa1.33□□□□□ -2.2
USP47-204ENST00000525078 CSMD3Q7Z407 3707 aa1.32□□□□□ -2.2
USP47-204ENST00000525078 STAB2Q8WWQ8 2551 aa1.32□□□□□ -2.2
USP47-204ENST00000525078 COL7A1Q02388 2944 aa1.32□□□□□ -2.2
USP47-204ENST00000525078 DNAH6Q9C0G6 4158 aa1.32□□□□□ -2.2
USP47-204ENST00000525078 FBN3Q75N90 2809 aa1.31□□□□□ -2.2
USP47-204ENST00000525078 HECTD4Q9Y4D8 3996 aa1.31□□□□□ -2.2
USP47-204ENST00000525078 NOTCH1P46531 2555 aa1.3□□□□□ -2.2
USP47-204ENST00000525078 CMYA5Q8N3K9 4069 aa1.3□□□□□ -2.2
USP47-204ENST00000525078 KRTAP19-3Q7Z4W3 81 aa1.29□□□□□ -2.2
USP47-204ENST00000525078 MGAM2Q2M2H8 2515 aa1.28□□□□□ -2.2
USP47-204ENST00000525078 COL6A5A8TX70 2615 aa1.28□□□□□ -2.2
USP47-204ENST00000525078 C9orf92A6NGG3 77 aa1.28□□□□□ -2.2
USP47-204ENST00000525078 DNAH11Q96DT5 4516 aa1.27□□□□□ -2.21
USP47-204ENST00000525078 SACSQ9NZJ4 4579 aa1.26□□□□□ -2.21
USP47-204ENST00000525078 DNAH2Q9P225 4427 aa1.26□□□□□ -2.21
USP47-204ENST00000525078 PKHD1L1Q86WI1 4243 aa1.26□□□□□ -2.21
USP47-204ENST00000525078 CRCT1Q9UGL9 99 aa1.26□□□□□ -2.21
USP47-204ENST00000525078 STAB1Q9NY15 2570 aa1.26□□□□□ -2.21
USP47-204ENST00000525078 PKHD1P08F94 4074 aa1.25□□□□□ -2.21
USP47-204ENST00000525078 KRTAP4-1Q9BYQ7 146 aa1.25□□□□□ -2.21
USP47-204ENST00000525078 KMT2AQ03164 3969 aa1.24□□□□□ -2.21
USP47-204ENST00000525078 PLECQ15149 4684 aaKnown RBP1.24□□□□□ -2.21
USP47-204ENST00000525078 PKD1P98161 4303 aa1.22□□□□□ -2.21
USP47-204ENST00000525078 STARD9Q9P2P6 4700 aa1.22□□□□□ -2.21
USP47-204ENST00000525078 VPS13BQ7Z7G8 4022 aa1.22□□□□□ -2.21
USP47-204ENST00000525078 DNAH5Q8TE73 4624 aa1.21□□□□□ -2.22
USP47-204ENST00000525078 TNXBP22105 4242 aa1.21□□□□□ -2.22
USP47-204ENST00000525078 LRP1BQ9NZR2 4599 aa1.21□□□□□ -2.22
USP47-204ENST00000525078 DMBT1Q9UGM3 2413 aaPredicted RBP1.2□□□□□ -2.22
USP47-204ENST00000525078 TNP1P09430 55 aa1.2□□□□□ -2.22
USP47-204ENST00000525078 KRTAP2-3P0C7H8 128 aa1.2□□□□□ -2.22
USP47-204ENST00000525078 KRTAP2-4Q9BYR9 128 aa1.2□□□□□ -2.22
USP47-204ENST00000525078 KRTAP2-1Q9BYU5 128 aa1.2□□□□□ -2.22
USP47-204ENST00000525078 APOBP04114 4563 aaKnown RBP1.19□□□□□ -2.22
USP47-204ENST00000525078 FCGBPQ9Y6R7 5405 aaPredicted RBP1.19□□□□□ -2.22
USP47-204ENST00000525078 FAT2Q9NYQ8 4349 aa1.19□□□□□ -2.22
USP47-204ENST00000525078 LRP1Q07954 4544 aaKnown RBP1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms