RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 C9orf92A6NGG3 77 aa4.48□□□□□ -1.69
CSMD1-213ENST00000523488 KRTAP1-4P0C5Y4 121 aa4.48□□□□□ -1.69
CSMD1-213ENST00000523488 LRP1BQ9NZR2 4599 aa4.47□□□□□ -1.69
CSMD1-213ENST00000523488 KRTAP10-1P60331 282 aa4.45□□□□□ -1.7
CSMD1-213ENST00000523488 KRTAP10-6P60371 365 aaPredicted RBP4.44□□□□□ -1.7
CSMD1-213ENST00000523488 LUZP6Q538Z0 58 aa4.44□□□□□ -1.7
CSMD1-213ENST00000523488 KRTAP3-2Q9BYR7 98 aa4.42□□□□□ -1.7
CSMD1-213ENST00000523488 LRP1Q07954 4544 aaKnown RBP4.41□□□□□ -1.7
CSMD1-213ENST00000523488 KRTAP3-3Q9BYR6 98 aa4.39□□□□□ -1.71
CSMD1-213ENST00000523488 XP32Q5T750 250 aa4.37□□□□□ -1.71
CSMD1-213ENST00000523488 S4R3F8 94 aa4.34□□□□□ -1.71
CSMD1-213ENST00000523488 KRTAP13-4Q3LI77 160 aa4.34□□□□□ -1.71
CSMD1-213ENST00000523488 FAT3Q8TDW7 4589 aa4.3□□□□□ -1.72
CSMD1-213ENST00000523488 FAT1Q14517 4588 aa4.29□□□□□ -1.72
CSMD1-213ENST00000523488 DYNC1H1Q14204 4646 aaKnown RBP4.28□□□□□ -1.72
CSMD1-213ENST00000523488 DNHD1Q96M86 4753 aa4.25□□□□□ -1.73
CSMD1-213ENST00000523488 KRTAP12-2P59991 146 aa4.25□□□□□ -1.73
CSMD1-213ENST00000523488 J3QL48 77 aa4.21□□□□□ -1.73
CSMD1-213ENST00000523488 Q5VSD8 79 aa4.21□□□□□ -1.73
CSMD1-213ENST00000523488 PLAC4Q8WY50 150 aa4.21□□□□□ -1.73
CSMD1-213ENST00000523488 KRTAP12-1P59990 96 aa4.21□□□□□ -1.74
CSMD1-213ENST00000523488 KRTAP10-4P60372 401 aaPredicted RBP4.2□□□□□ -1.74
CSMD1-213ENST00000523488 FLGP20930 4061 aaPredicted RBP4.2□□□□□ -1.74
CSMD1-213ENST00000523488 HYDINQ4G0P3 5121 aa4.18□□□□□ -1.74
CSMD1-213ENST00000523488 M0QZ58 72 aa4.13□□□□□ -1.75
CSMD1-213ENST00000523488 SPRR5A0A1B0GTR4 108 aa4.12□□□□□ -1.75
CSMD1-213ENST00000523488 SEC61BP60468 96 aaKnown RBP4.09□□□□□ -1.75
CSMD1-213ENST00000523488 KRTAP10-8P60410 259 aa4.07□□□□□ -1.76
CSMD1-213ENST00000523488 R4GN34 69 aa4.05□□□□□ -1.76
CSMD1-213ENST00000523488 KRTAP23-1A1A580 65 aa4.03□□□□□ -1.76
CSMD1-213ENST00000523488 KRTAP21-3Q3LHN1 58 aa4.01□□□□□ -1.77
CSMD1-213ENST00000523488 PP632Q6XCG6 107 aa3.96□□□□□ -1.78
CSMD1-213ENST00000523488 CAMK2N1Q7Z7J9 78 aa3.95□□□□□ -1.78
CSMD1-213ENST00000523488 MUC17Q685J3 4493 aa3.95□□□□□ -1.78
CSMD1-213ENST00000523488 A0A1B0GVY2 172 aa3.93□□□□□ -1.78
CSMD1-213ENST00000523488 M0R2T5 61 aa3.9□□□□□ -1.79
CSMD1-213ENST00000523488 LPAP08519 4548 aa3.86□□□□□ -1.79
CSMD1-213ENST00000523488 KIAA1109Q2LD37 5005 aa3.85□□□□□ -1.79
CSMD1-213ENST00000523488 HERC1Q15751 4861 aa3.84□□□□□ -1.79
CSMD1-213ENST00000523488 KRTAP4-5Q9BYR2 181 aa3.81□□□□□ -1.8
CSMD1-213ENST00000523488 KRTAP19-2Q3LHN2 52 aa3.8□□□□□ -1.8
CSMD1-213ENST00000523488 PRO2289Q9P1D8 64 aa3.8□□□□□ -1.8
CSMD1-213ENST00000523488 RYR1P21817 5038 aa3.79□□□□□ -1.8
CSMD1-213ENST00000523488 RYR2Q92736 4967 aa3.78□□□□□ -1.8
CSMD1-213ENST00000523488 TNP1P09430 55 aa3.77□□□□□ -1.81
CSMD1-213ENST00000523488 KMT2CQ8NEZ4 4911 aaKnown RBP3.75□□□□□ -1.81
CSMD1-213ENST00000523488 LORP23490 312 aaPredicted RBP3.74□□□□□ -1.81
CSMD1-213ENST00000523488 RYR3Q15413 4870 aa3.73□□□□□ -1.81
CSMD1-213ENST00000523488 INE1O15225 51 aa3.71□□□□□ -1.82
CSMD1-213ENST00000523488 MT1HL1P0DM35 61 aa3.7□□□□□ -1.82
CSMD1-213ENST00000523488 LCE2DQ5TA82 110 aaPredicted RBP3.64□□□□□ -1.83
CSMD1-213ENST00000523488 KRTAP17-1Q9BYP8 105 aa3.64□□□□□ -1.83
CSMD1-213ENST00000523488 LRP2P98164 4655 aa3.62□□□□□ -1.83
CSMD1-213ENST00000523488 EPPK1P58107 5090 aaKnown RBP3.52□□□□□ -1.85
CSMD1-213ENST00000523488 HERC2O95714 4834 aa3.51□□□□□ -1.85
CSMD1-213ENST00000523488 KRTAP10-10P60014 251 aa3.5□□□□□ -1.85
CSMD1-213ENST00000523488 KRTAP8-1Q8IUC2 63 aa3.47□□□□□ -1.85
CSMD1-213ENST00000523488 SPRR2GQ9BYE4 73 aa3.47□□□□□ -1.85
CSMD1-213ENST00000523488 KRTAP4-1Q9BYQ7 146 aa3.46□□□□□ -1.85
CSMD1-213ENST00000523488 BIRC6Q9NR09 4857 aa3.45□□□□□ -1.86
CSMD1-213ENST00000523488 KRTAP10-12P60413 245 aa3.43□□□□□ -1.86
CSMD1-213ENST00000523488 LCE3AQ5TA76 89 aa3.43□□□□□ -1.86
CSMD1-213ENST00000523488 ABCA13Q86UQ4 5058 aa3.41□□□□□ -1.86
CSMD1-213ENST00000523488 MUC2Q02817 5179 aa3.4□□□□□ -1.86
CSMD1-213ENST00000523488 PCLOQ9Y6V0 5065 aa3.39□□□□□ -1.87
CSMD1-213ENST00000523488 RNF213Q63HN8 5207 aa3.36□□□□□ -1.87
CSMD1-213ENST00000523488 KRTAP10-5P60370 271 aa3.35□□□□□ -1.87
CSMD1-213ENST00000523488 HMCN2Q8NDA2 5059 aa3.35□□□□□ -1.87
CSMD1-213ENST00000523488 KRTAP19-1Q8IUB9 90 aa3.35□□□□□ -1.87
CSMD1-213ENST00000523488 KRTAP19-8Q3LI54 63 aa3.31□□□□□ -1.88
CSMD1-213ENST00000523488 KRTAP12-3P60328 96 aa3.28□□□□□ -1.89
CSMD1-213ENST00000523488 FAT4Q6V0I7 4981 aa3.28□□□□□ -1.89
CSMD1-213ENST00000523488 LCE2CQ5TA81 110 aa3.27□□□□□ -1.89
CSMD1-213ENST00000523488 KRTAP2-3P0C7H8 128 aa3.26□□□□□ -1.89
CSMD1-213ENST00000523488 KRTAP2-4Q9BYR9 128 aa3.26□□□□□ -1.89
CSMD1-213ENST00000523488 KRTAP2-1Q9BYU5 128 aa3.26□□□□□ -1.89
CSMD1-213ENST00000523488 FSIP2Q5CZC0 6907 aa3.25□□□□□ -1.89
CSMD1-213ENST00000523488 UBR4Q5T4S7 5183 aa3.24□□□□□ -1.89
CSMD1-213ENST00000523488 KRTAP19-4Q3LI73 84 aa3.18□□□□□ -1.9
CSMD1-213ENST00000523488 MT1XP80297 61 aa3.18□□□□□ -1.9
CSMD1-213ENST00000523488 MT1HP80294 61 aa3.14□□□□□ -1.91
CSMD1-213ENST00000523488 MT1BP07438 61 aa3.13□□□□□ -1.91
CSMD1-213ENST00000523488 KRTAP10-7P60409 375 aaPredicted RBP3.11□□□□□ -1.91
CSMD1-213ENST00000523488 MT1FP04733 61 aa3.1□□□□□ -1.91
CSMD1-213ENST00000523488 MT2AP02795 61 aa3.09□□□□□ -1.91
CSMD1-213ENST00000523488 LCE3CQ5T5A8 94 aa3.09□□□□□ -1.92
CSMD1-213ENST00000523488 LCE2AQ5TA79 106 aaPredicted RBP3.08□□□□□ -1.92
CSMD1-213ENST00000523488 KRTAP9-8Q9BYQ0 159 aa3.08□□□□□ -1.92
CSMD1-213ENST00000523488 KRTAP19-5Q3LI72 72 aa3.08□□□□□ -1.92
CSMD1-213ENST00000523488 KRTAP9-6A8MVA2 160 aa3.04□□□□□ -1.92
CSMD1-213ENST00000523488 LCE2BO14633 110 aa3.02□□□□□ -1.93
CSMD1-213ENST00000523488 USH2AO75445 5202 aa2.98□□□□□ -1.93
CSMD1-213ENST00000523488 CRCT1Q9UGL9 99 aa2.97□□□□□ -1.93
CSMD1-213ENST00000523488 OBSCNQ5VST9 7968 aa2.96□□□□□ -1.94
CSMD1-213ENST00000523488 KRTAP9-3Q9BYQ3 159 aa2.95□□□□□ -1.94
CSMD1-213ENST00000523488 KRTAP19-7Q3SYF9 63 aa2.86□□□□□ -1.95
CSMD1-213ENST00000523488 KRTAP4-8A0A0G2JLE6 195 aa2.85□□□□□ -1.95
CSMD1-213ENST00000523488 KRTAP4-8Q9BYQ9 185 aa2.85□□□□□ -1.95
CSMD1-213ENST00000523488 KMT2DO14686 5537 aa2.84□□□□□ -1.95
CSMD1-213ENST00000523488 MT1EP04732 61 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms