RNA–Protein interactions for RNA: ENST00000515682.5

SH3TC1-225, Transcript of SH3 domain and tetratricopeptide repeats 1, humanhuman

TSL 2

Gene SH3TC1, Length 4,293 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3TC1-225ENST00000515682 VPS13DQ5THJ4 4388 aa6.85□□□□□ -1.31
SH3TC1-225ENST00000515682 KMT2AQ03164 3969 aa6.84□□□□□ -1.31
SH3TC1-225ENST00000515682 LRP1BQ9NZR2 4599 aa6.83□□□□□ -1.32
SH3TC1-225ENST00000515682 DNAH2Q9P225 4427 aa6.78□□□□□ -1.32
SH3TC1-225ENST00000515682 PRKDCP78527 4128 aaKnown RBP6.77□□□□□ -1.33
SH3TC1-225ENST00000515682 KRTAP12-1P59990 96 aa6.76□□□□□ -1.33
SH3TC1-225ENST00000515682 KRTAP3-3Q9BYR6 98 aa6.76□□□□□ -1.33
SH3TC1-225ENST00000515682 KRTAP3-2Q9BYR7 98 aa6.75□□□□□ -1.33
SH3TC1-225ENST00000515682 A0A0A0MQY5 61 aa6.72□□□□□ -1.33
SH3TC1-225ENST00000515682 HECTD4Q9Y4D8 3996 aa6.71□□□□□ -1.34
SH3TC1-225ENST00000515682 PLAC4Q8WY50 150 aa6.7□□□□□ -1.34
SH3TC1-225ENST00000515682 KRTAP10-4P60372 401 aaPredicted RBP6.7□□□□□ -1.34
SH3TC1-225ENST00000515682 DNAH6Q9C0G6 4158 aa6.69□□□□□ -1.34
SH3TC1-225ENST00000515682 DNAH5Q8TE73 4624 aa6.68□□□□□ -1.34
SH3TC1-225ENST00000515682 MT1HL1P0DM35 61 aa6.65□□□□□ -1.34
SH3TC1-225ENST00000515682 KRTAP15-1Q3LI76 137 aa6.65□□□□□ -1.34
SH3TC1-225ENST00000515682 KRTAP4-5Q9BYR2 181 aa6.65□□□□□ -1.34
SH3TC1-225ENST00000515682 FAT1Q14517 4588 aa6.64□□□□□ -1.35
SH3TC1-225ENST00000515682 VPS13BQ7Z7G8 4022 aa6.62□□□□□ -1.35
SH3TC1-225ENST00000515682 DYNC2H1Q8NCM8 4307 aaKnown RBP6.55□□□□□ -1.36
SH3TC1-225ENST00000515682 DYNC1H1Q14204 4646 aaKnown RBP6.5□□□□□ -1.37
SH3TC1-225ENST00000515682 MYCBP2O75592 4640 aa6.48□□□□□ -1.37
SH3TC1-225ENST00000515682 PP632Q6XCG6 107 aa6.41□□□□□ -1.38
SH3TC1-225ENST00000515682 TNP1P09430 55 aa6.4□□□□□ -1.39
SH3TC1-225ENST00000515682 SACSQ9NZJ4 4579 aa6.4□□□□□ -1.39
SH3TC1-225ENST00000515682 KIAA1109Q2LD37 5005 aa6.39□□□□□ -1.39
SH3TC1-225ENST00000515682 KRTAP10-10P60014 251 aa6.37□□□□□ -1.39
SH3TC1-225ENST00000515682 HYDINQ4G0P3 5121 aa6.35□□□□□ -1.39
SH3TC1-225ENST00000515682 RYR1P21817 5038 aa6.35□□□□□ -1.39
SH3TC1-225ENST00000515682 PKHD1P08F94 4074 aa6.31□□□□□ -1.4
SH3TC1-225ENST00000515682 APOBP04114 4563 aaKnown RBP6.31□□□□□ -1.4
SH3TC1-225ENST00000515682 LRP1Q07954 4544 aaKnown RBP6.29□□□□□ -1.4
SH3TC1-225ENST00000515682 RYR3Q15413 4870 aa6.29□□□□□ -1.4
SH3TC1-225ENST00000515682 LORP23490 312 aaPredicted RBP6.27□□□□□ -1.41
SH3TC1-225ENST00000515682 FAT2Q9NYQ8 4349 aa6.23□□□□□ -1.41
SH3TC1-225ENST00000515682 FAT3Q8TDW7 4589 aa6.19□□□□□ -1.42
SH3TC1-225ENST00000515682 RYR2Q92736 4967 aa6.17□□□□□ -1.42
SH3TC1-225ENST00000515682 PKD1P98161 4303 aa6.17□□□□□ -1.42
SH3TC1-225ENST00000515682 KRTAP17-1Q9BYP8 105 aa6.13□□□□□ -1.43
SH3TC1-225ENST00000515682 KMT2CQ8NEZ4 4911 aaKnown RBP6.1□□□□□ -1.43
SH3TC1-225ENST00000515682 HSPG2P98160 4391 aa6.06□□□□□ -1.44
SH3TC1-225ENST00000515682 LRP2P98164 4655 aa6.05□□□□□ -1.44
SH3TC1-225ENST00000515682 HERC2O95714 4834 aa5.99□□□□□ -1.45
SH3TC1-225ENST00000515682 KRTAP4-1Q9BYQ7 146 aa5.96□□□□□ -1.46
SH3TC1-225ENST00000515682 PRO2289Q9P1D8 64 aa5.96□□□□□ -1.46
SH3TC1-225ENST00000515682 PKHD1L1Q86WI1 4243 aa5.88□□□□□ -1.47
SH3TC1-225ENST00000515682 BIRC6Q9NR09 4857 aa5.87□□□□□ -1.47
SH3TC1-225ENST00000515682 LPAP08519 4548 aa5.81□□□□□ -1.48
SH3TC1-225ENST00000515682 EPPK1P58107 5090 aaKnown RBP5.78□□□□□ -1.48
SH3TC1-225ENST00000515682 TNXBP22105 4242 aa5.76□□□□□ -1.49
SH3TC1-225ENST00000515682 LCE3AQ5TA76 89 aa5.73□□□□□ -1.49
SH3TC1-225ENST00000515682 KRTAP23-1A1A580 65 aa5.67□□□□□ -1.5
SH3TC1-225ENST00000515682 MT1HP80294 61 aa5.67□□□□□ -1.5
SH3TC1-225ENST00000515682 ABCA13Q86UQ4 5058 aa5.63□□□□□ -1.51
SH3TC1-225ENST00000515682 PCLOQ9Y6V0 5065 aa5.55□□□□□ -1.52
SH3TC1-225ENST00000515682 INE1O15225 51 aa5.55□□□□□ -1.52
SH3TC1-225ENST00000515682 MT2AP02795 61 aa5.55□□□□□ -1.52
SH3TC1-225ENST00000515682 HERC1Q15751 4861 aa5.53□□□□□ -1.52
SH3TC1-225ENST00000515682 KRTAP12-3P60328 96 aa5.52□□□□□ -1.53
SH3TC1-225ENST00000515682 KRTAP10-12P60413 245 aa5.51□□□□□ -1.53
SH3TC1-225ENST00000515682 MT1FP04733 61 aa5.48□□□□□ -1.53
SH3TC1-225ENST00000515682 SPRR5A0A1B0GTR4 108 aa5.45□□□□□ -1.54
SH3TC1-225ENST00000515682 SPRR2GQ9BYE4 73 aa5.43□□□□□ -1.54
SH3TC1-225ENST00000515682 MUC2Q02817 5179 aa5.41□□□□□ -1.54
SH3TC1-225ENST00000515682 KRTAP19-2Q3LHN2 52 aa5.38□□□□□ -1.55
SH3TC1-225ENST00000515682 KRTAP19-1Q8IUB9 90 aa5.38□□□□□ -1.55
SH3TC1-225ENST00000515682 LCE2CQ5TA81 110 aa5.34□□□□□ -1.55
SH3TC1-225ENST00000515682 MUC17Q685J3 4493 aa5.33□□□□□ -1.56
SH3TC1-225ENST00000515682 KRTAP8-1Q8IUC2 63 aa5.31□□□□□ -1.56
SH3TC1-225ENST00000515682 FLGP20930 4061 aaPredicted RBP5.24□□□□□ -1.57
SH3TC1-225ENST00000515682 KRTAP9-8Q9BYQ0 159 aa5.23□□□□□ -1.57
SH3TC1-225ENST00000515682 RNF213Q63HN8 5207 aa5.21□□□□□ -1.57
SH3TC1-225ENST00000515682 FAT4Q6V0I7 4981 aa5.21□□□□□ -1.57
SH3TC1-225ENST00000515682 CRCT1Q9UGL9 99 aa5.18□□□□□ -1.58
SH3TC1-225ENST00000515682 UBR4Q5T4S7 5183 aa5.17□□□□□ -1.58
SH3TC1-225ENST00000515682 KRTAP10-7P60409 375 aaPredicted RBP5.15□□□□□ -1.58
SH3TC1-225ENST00000515682 HMCN2Q8NDA2 5059 aa5.15□□□□□ -1.59
SH3TC1-225ENST00000515682 KRTAP19-8Q3LI54 63 aa5.14□□□□□ -1.59
SH3TC1-225ENST00000515682 MT1XP80297 61 aa5.13□□□□□ -1.59
SH3TC1-225ENST00000515682 KRTAP10-5P60370 271 aa5.11□□□□□ -1.59
SH3TC1-225ENST00000515682 KRTAP19-5Q3LI72 72 aa5.09□□□□□ -1.59
SH3TC1-225ENST00000515682 MT1BP07438 61 aa5.07□□□□□ -1.6
SH3TC1-225ENST00000515682 KRTAP9-3Q9BYQ3 159 aa5.07□□□□□ -1.6
SH3TC1-225ENST00000515682 FSIP2Q5CZC0 6907 aa5.04□□□□□ -1.6
SH3TC1-225ENST00000515682 LCE3CQ5T5A8 94 aa5.03□□□□□ -1.6
SH3TC1-225ENST00000515682 LCE2BO14633 110 aa4.92□□□□□ -1.62
SH3TC1-225ENST00000515682 SPRR2FQ96RM1 72 aa4.88□□□□□ -1.63
SH3TC1-225ENST00000515682 KRTAP4-8A0A0G2JLE6 195 aa4.88□□□□□ -1.63
SH3TC1-225ENST00000515682 KRTAP4-8Q9BYQ9 185 aa4.88□□□□□ -1.63
SH3TC1-225ENST00000515682 LCE2AQ5TA79 106 aaPredicted RBP4.87□□□□□ -1.63
SH3TC1-225ENST00000515682 KRTAP4-7Q9BYR0 210 aa4.8□□□□□ -1.64
SH3TC1-225ENST00000515682 OBSCNQ5VST9 7968 aa4.73□□□□□ -1.65
SH3TC1-225ENST00000515682 KMT2DO14686 5537 aa4.67□□□□□ -1.66
SH3TC1-225ENST00000515682 KRTAP9-2Q9BYQ4 174 aa4.62□□□□□ -1.67
SH3TC1-225ENST00000515682 USH2AO75445 5202 aa4.62□□□□□ -1.67
SH3TC1-225ENST00000515682 KRTAP9-6A8MVA2 160 aa4.62□□□□□ -1.67
SH3TC1-225ENST00000515682 SYNE1Q8NF91 8797 aaKnown RBP4.6□□□□□ -1.67
SH3TC1-225ENST00000515682 KRTAP19-6Q3LI70 58 aa4.59□□□□□ -1.68
SH3TC1-225ENST00000515682 SPRR2EP22531 72 aa4.55□□□□□ -1.68
SH3TC1-225ENST00000515682 SPRR2BP35325 72 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms