RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 DNAH1Q9P2D7 4330 aa4.35□□□□□ -1.71
LIMCH1-218ENST00000513024 KMT2AQ03164 3969 aa4.34□□□□□ -1.71
LIMCH1-218ENST00000513024 DYNC2H1Q8NCM8 4307 aaKnown RBP4.32□□□□□ -1.72
LIMCH1-218ENST00000513024 KRTAP12-1P59990 96 aa4.32□□□□□ -1.72
LIMCH1-218ENST00000513024 KMT2CQ8NEZ4 4911 aaKnown RBP4.29□□□□□ -1.72
LIMCH1-218ENST00000513024 HYDINQ4G0P3 5121 aa4.29□□□□□ -1.72
LIMCH1-218ENST00000513024 FRAS1Q86XX4 4008 aa4.27□□□□□ -1.73
LIMCH1-218ENST00000513024 VPS13DQ5THJ4 4388 aa4.26□□□□□ -1.73
LIMCH1-218ENST00000513024 DNAH2Q9P225 4427 aa4.24□□□□□ -1.73
LIMCH1-218ENST00000513024 DNAH8Q96JB1 4490 aa4.23□□□□□ -1.73
LIMCH1-218ENST00000513024 SACSQ9NZJ4 4579 aa4.21□□□□□ -1.74
LIMCH1-218ENST00000513024 DNAH11Q96DT5 4516 aa4.19□□□□□ -1.74
LIMCH1-218ENST00000513024 KRTAP23-1A1A580 65 aa4.19□□□□□ -1.74
LIMCH1-218ENST00000513024 KRTAP3-1Q9BYR8 98 aa4.19□□□□□ -1.74
LIMCH1-218ENST00000513024 RYR3Q15413 4870 aa4.18□□□□□ -1.74
LIMCH1-218ENST00000513024 DNAH17Q9UFH2 4485 aa4.17□□□□□ -1.74
LIMCH1-218ENST00000513024 PKHD1P08F94 4074 aa4.16□□□□□ -1.74
LIMCH1-218ENST00000513024 HECTD4Q9Y4D8 3996 aa4.16□□□□□ -1.74
LIMCH1-218ENST00000513024 DNAH6Q9C0G6 4158 aa4.16□□□□□ -1.74
LIMCH1-218ENST00000513024 FAT2Q9NYQ8 4349 aa4.14□□□□□ -1.75
LIMCH1-218ENST00000513024 LRP1BQ9NZR2 4599 aa4.14□□□□□ -1.75
LIMCH1-218ENST00000513024 RYR2Q92736 4967 aa4.13□□□□□ -1.75
LIMCH1-218ENST00000513024 PKD1P98161 4303 aa4.12□□□□□ -1.75
LIMCH1-218ENST00000513024 ALMS1Q8TCU4 4167 aa4.1□□□□□ -1.75
LIMCH1-218ENST00000513024 KRTAP10-6P60371 365 aaPredicted RBP4.1□□□□□ -1.75
LIMCH1-218ENST00000513024 DNAH5Q8TE73 4624 aa4.06□□□□□ -1.76
LIMCH1-218ENST00000513024 EPPK1P58107 5090 aaKnown RBP4.02□□□□□ -1.77
LIMCH1-218ENST00000513024 VPS13BQ7Z7G8 4022 aa3.98□□□□□ -1.77
LIMCH1-218ENST00000513024 FAT1Q14517 4588 aa3.98□□□□□ -1.77
LIMCH1-218ENST00000513024 DYNC1H1Q14204 4646 aaKnown RBP3.97□□□□□ -1.77
LIMCH1-218ENST00000513024 KRTAP10-4P60372 401 aaPredicted RBP3.95□□□□□ -1.78
LIMCH1-218ENST00000513024 APOBP04114 4563 aaKnown RBP3.93□□□□□ -1.78
LIMCH1-218ENST00000513024 KRTAP3-2Q9BYR7 98 aa3.93□□□□□ -1.78
LIMCH1-218ENST00000513024 KIAA1109Q2LD37 5005 aa3.93□□□□□ -1.78
LIMCH1-218ENST00000513024 KRTAP3-3Q9BYR6 98 aa3.92□□□□□ -1.78
LIMCH1-218ENST00000513024 MT1HL1P0DM35 61 aa3.91□□□□□ -1.78
LIMCH1-218ENST00000513024 HSPG2P98160 4391 aa3.89□□□□□ -1.79
LIMCH1-218ENST00000513024 KRTAP4-5Q9BYR2 181 aa3.86□□□□□ -1.79
LIMCH1-218ENST00000513024 KRTAP17-1Q9BYP8 105 aa3.85□□□□□ -1.79
LIMCH1-218ENST00000513024 MYCBP2O75592 4640 aa3.84□□□□□ -1.79
LIMCH1-218ENST00000513024 RYR1P21817 5038 aa3.84□□□□□ -1.79
LIMCH1-218ENST00000513024 KRTAP10-12P60413 245 aa3.81□□□□□ -1.8
LIMCH1-218ENST00000513024 LRP1Q07954 4544 aaKnown RBP3.81□□□□□ -1.8
LIMCH1-218ENST00000513024 KRTAP12-3P60328 96 aa3.81□□□□□ -1.8
LIMCH1-218ENST00000513024 CRCT1Q9UGL9 99 aa3.8□□□□□ -1.8
LIMCH1-218ENST00000513024 PKHD1L1Q86WI1 4243 aa3.77□□□□□ -1.81
LIMCH1-218ENST00000513024 BIRC6Q9NR09 4857 aa3.76□□□□□ -1.81
LIMCH1-218ENST00000513024 ABCA13Q86UQ4 5058 aa3.76□□□□□ -1.81
LIMCH1-218ENST00000513024 PCLOQ9Y6V0 5065 aa3.75□□□□□ -1.81
LIMCH1-218ENST00000513024 KRTAP10-5P60370 271 aa3.74□□□□□ -1.81
LIMCH1-218ENST00000513024 KRTAP8-1Q8IUC2 63 aa3.72□□□□□ -1.81
LIMCH1-218ENST00000513024 HERC2O95714 4834 aa3.72□□□□□ -1.81
LIMCH1-218ENST00000513024 LORP23490 312 aaPredicted RBP3.7□□□□□ -1.82
LIMCH1-218ENST00000513024 FAT3Q8TDW7 4589 aa3.69□□□□□ -1.82
LIMCH1-218ENST00000513024 LCE3AQ5TA76 89 aa3.69□□□□□ -1.82
LIMCH1-218ENST00000513024 TNXBP22105 4242 aa3.69□□□□□ -1.82
LIMCH1-218ENST00000513024 HERC1Q15751 4861 aa3.65□□□□□ -1.82
LIMCH1-218ENST00000513024 LRP2P98164 4655 aa3.64□□□□□ -1.83
LIMCH1-218ENST00000513024 LPAP08519 4548 aa3.56□□□□□ -1.84
LIMCH1-218ENST00000513024 KRTAP10-7P60409 375 aaPredicted RBP3.49□□□□□ -1.85
LIMCH1-218ENST00000513024 MUC2Q02817 5179 aa3.48□□□□□ -1.85
LIMCH1-218ENST00000513024 KRTAP4-1Q9BYQ7 146 aa3.47□□□□□ -1.85
LIMCH1-218ENST00000513024 SPRR2FQ96RM1 72 aa3.47□□□□□ -1.85
LIMCH1-218ENST00000513024 HMCN2Q8NDA2 5059 aa3.46□□□□□ -1.86
LIMCH1-218ENST00000513024 MT1HP80294 61 aa3.46□□□□□ -1.86
LIMCH1-218ENST00000513024 UBR4Q5T4S7 5183 aa3.43□□□□□ -1.86
LIMCH1-218ENST00000513024 RNF213Q63HN8 5207 aa3.43□□□□□ -1.86
LIMCH1-218ENST00000513024 KRTAP19-4Q3LI73 84 aa3.4□□□□□ -1.87
LIMCH1-218ENST00000513024 SPRR2EP22531 72 aa3.38□□□□□ -1.87
LIMCH1-218ENST00000513024 SPRR2BP35325 72 aa3.38□□□□□ -1.87
LIMCH1-218ENST00000513024 SPRR2AP35326 72 aa3.38□□□□□ -1.87
LIMCH1-218ENST00000513024 MT2AP02795 61 aa3.36□□□□□ -1.87
LIMCH1-218ENST00000513024 LCE2DQ5TA82 110 aaPredicted RBP3.35□□□□□ -1.87
LIMCH1-218ENST00000513024 KRTAP19-2Q3LHN2 52 aa3.33□□□□□ -1.88
LIMCH1-218ENST00000513024 SPRR2DP22532 72 aa3.31□□□□□ -1.88
LIMCH1-218ENST00000513024 FAT4Q6V0I7 4981 aa3.3□□□□□ -1.88
LIMCH1-218ENST00000513024 MUC17Q685J3 4493 aa3.29□□□□□ -1.88
LIMCH1-218ENST00000513024 LCE3CQ5T5A8 94 aa3.27□□□□□ -1.89
LIMCH1-218ENST00000513024 SPRR2GQ9BYE4 73 aa3.27□□□□□ -1.89
LIMCH1-218ENST00000513024 KRTAP12-4P60329 112 aa3.26□□□□□ -1.89
LIMCH1-218ENST00000513024 KRTAP19-5Q3LI72 72 aa3.25□□□□□ -1.89
LIMCH1-218ENST00000513024 LCE2BO14633 110 aa3.23□□□□□ -1.89
LIMCH1-218ENST00000513024 MT1FP04733 61 aa3.21□□□□□ -1.9
LIMCH1-218ENST00000513024 FLGP20930 4061 aaPredicted RBP3.2□□□□□ -1.9
LIMCH1-218ENST00000513024 SPRR5A0A1B0GTR4 108 aa3.19□□□□□ -1.9
LIMCH1-218ENST00000513024 KRTAP19-1Q8IUB9 90 aa3.19□□□□□ -1.9
LIMCH1-218ENST00000513024 KRTAP9-6A0A140TA67 174 aa3.16□□□□□ -1.9
LIMCH1-218ENST00000513024 LCE2CQ5TA81 110 aa3.14□□□□□ -1.91
LIMCH1-218ENST00000513024 KRTAP9-2Q9BYQ4 174 aa3.12□□□□□ -1.91
LIMCH1-218ENST00000513024 KRTAP19-8Q3LI54 63 aa3.07□□□□□ -1.92
LIMCH1-218ENST00000513024 LCE3BQ5TA77 95 aa3.05□□□□□ -1.92
LIMCH1-218ENST00000513024 MT3P25713 68 aa3.04□□□□□ -1.92
LIMCH1-218ENST00000513024 LCE3DQ9BYE3 92 aa3.03□□□□□ -1.92
LIMCH1-218ENST00000513024 MT1GP13640 62 aa3.03□□□□□ -1.93
LIMCH1-218ENST00000513024 KRTAP9-8Q9BYQ0 159 aa3.03□□□□□ -1.93
LIMCH1-218ENST00000513024 SYNE1Q8NF91 8797 aaKnown RBP3.02□□□□□ -1.93
LIMCH1-218ENST00000513024 LCE3EQ5T5B0 92 aa3.02□□□□□ -1.93
LIMCH1-218ENST00000513024 KRTAP20-1Q3LI63 56 aa3□□□□□ -1.93
LIMCH1-218ENST00000513024 MT1BP07438 61 aa3□□□□□ -1.93
LIMCH1-218ENST00000513024 MT1XP80297 61 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms