RNA–Protein interactions for RNA: ENST00000511467.1

PTPN13-209, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS P4 TSL 2 BASIC

Gene PTPN13, Length 8,076 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-209ENST00000511467 KRTAP10-6P60371 365 aaPredicted RBP2.25□□□□□ -2.05
PTPN13-209ENST00000511467 KRTAP10-4P60372 401 aaPredicted RBP2.25□□□□□ -2.05
PTPN13-209ENST00000511467 PKHD1P08F94 4074 aa2.25□□□□□ -2.05
PTPN13-209ENST00000511467 FLGP20930 4061 aaPredicted RBP2.24□□□□□ -2.05
PTPN13-209ENST00000511467 KRTAP10-12P60413 245 aa2.24□□□□□ -2.05
PTPN13-209ENST00000511467 CUBNO60494 3623 aa2.24□□□□□ -2.05
PTPN13-209ENST00000511467 KRTAP12-2P59991 146 aa2.24□□□□□ -2.05
PTPN13-209ENST00000511467 CSMD1Q96PZ7 3565 aa2.24□□□□□ -2.05
PTPN13-209ENST00000511467 CSMD2Q7Z408 3487 aa2.21□□□□□ -2.05
PTPN13-209ENST00000511467 ANK3Q12955 4377 aaKnown RBP2.21□□□□□ -2.06
PTPN13-209ENST00000511467 KRTAP15-1Q3LI76 137 aa2.21□□□□□ -2.06
PTPN13-209ENST00000511467 KRTAP3-1Q9BYR8 98 aa2.21□□□□□ -2.06
PTPN13-209ENST00000511467 DNAH2Q9P225 4427 aa2.18□□□□□ -2.06
PTPN13-209ENST00000511467 RYR2Q92736 4967 aa2.18□□□□□ -2.06
PTPN13-209ENST00000511467 SPRR2GQ9BYE4 73 aa2.17□□□□□ -2.06
PTPN13-209ENST00000511467 KRTAP3-3Q9BYR6 98 aa2.16□□□□□ -2.06
PTPN13-209ENST00000511467 KRTAP3-2Q9BYR7 98 aa2.15□□□□□ -2.06
PTPN13-209ENST00000511467 DYNC2H1Q8NCM8 4307 aaKnown RBP2.15□□□□□ -2.07
PTPN13-209ENST00000511467 KRTAP12-3P60328 96 aa2.14□□□□□ -2.07
PTPN13-209ENST00000511467 SVEP1Q4LDE5 3571 aa2.13□□□□□ -2.07
PTPN13-209ENST00000511467 BIRC6Q9NR09 4857 aa2.12□□□□□ -2.07
PTPN13-209ENST00000511467 CSMD3Q7Z407 3707 aa2.12□□□□□ -2.07
PTPN13-209ENST00000511467 DNAH10Q8IVF4 4471 aa2.12□□□□□ -2.07
PTPN13-209ENST00000511467 FAT2Q9NYQ8 4349 aa2.11□□□□□ -2.07
PTPN13-209ENST00000511467 VPS13DQ5THJ4 4388 aa2.11□□□□□ -2.07
PTPN13-209ENST00000511467 LORP23490 312 aaPredicted RBP2.09□□□□□ -2.07
PTPN13-209ENST00000511467 PKHD1L1Q86WI1 4243 aa2.07□□□□□ -2.08
PTPN13-209ENST00000511467 DNAH9Q9NYC9 4486 aa2.03□□□□□ -2.08
PTPN13-209ENST00000511467 HYDINQ4G0P3 5121 aa2.02□□□□□ -2.09
PTPN13-209ENST00000511467 KRTAP8-1Q8IUC2 63 aa2.02□□□□□ -2.09
PTPN13-209ENST00000511467 KRTAP19-8Q3LI54 63 aa2.01□□□□□ -2.09
PTPN13-209ENST00000511467 PKD1P98161 4303 aa2□□□□□ -2.09
PTPN13-209ENST00000511467 HERC2O95714 4834 aa1.99□□□□□ -2.09
PTPN13-209ENST00000511467 DNAH17Q9UFH2 4485 aa1.98□□□□□ -2.09
PTPN13-209ENST00000511467 KRTAP10-7P60409 375 aaPredicted RBP1.97□□□□□ -2.09
PTPN13-209ENST00000511467 HSPG2P98160 4391 aa1.95□□□□□ -2.1
PTPN13-209ENST00000511467 DNAH11Q96DT5 4516 aa1.95□□□□□ -2.1
PTPN13-209ENST00000511467 MT1HP80294 61 aa1.94□□□□□ -2.1
PTPN13-209ENST00000511467 TNXBP22105 4242 aa1.93□□□□□ -2.1
PTPN13-209ENST00000511467 DNAH8Q96JB1 4490 aa1.92□□□□□ -2.1
PTPN13-209ENST00000511467 LCE3AQ5TA76 89 aa1.92□□□□□ -2.1
PTPN13-209ENST00000511467 DYNC1H1Q14204 4646 aaKnown RBP1.91□□□□□ -2.1
PTPN13-209ENST00000511467 LCE3CQ5T5A8 94 aa1.91□□□□□ -2.1
PTPN13-209ENST00000511467 LRP1Q07954 4544 aaKnown RBP1.89□□□□□ -2.11
PTPN13-209ENST00000511467 KMT2CQ8NEZ4 4911 aaKnown RBP1.89□□□□□ -2.11
PTPN13-209ENST00000511467 MT2AP02795 61 aa1.89□□□□□ -2.11
PTPN13-209ENST00000511467 MT1FP04733 61 aa1.88□□□□□ -2.11
PTPN13-209ENST00000511467 KRTAP10-5P60370 271 aa1.88□□□□□ -2.11
PTPN13-209ENST00000511467 DNHD1Q96M86 4753 aa1.87□□□□□ -2.11
PTPN13-209ENST00000511467 ABCA13Q86UQ4 5058 aa1.87□□□□□ -2.11
PTPN13-209ENST00000511467 KRTAP12-4P60329 112 aa1.86□□□□□ -2.11
PTPN13-209ENST00000511467 EPPK1P58107 5090 aaKnown RBP1.86□□□□□ -2.11
PTPN13-209ENST00000511467 SACSQ9NZJ4 4579 aa1.85□□□□□ -2.11
PTPN13-209ENST00000511467 MT1GP13640 62 aa1.85□□□□□ -2.11
PTPN13-209ENST00000511467 SPRR5A0A1B0GTR4 108 aa1.84□□□□□ -2.11
PTPN13-209ENST00000511467 RYR3Q15413 4870 aa1.84□□□□□ -2.12
PTPN13-209ENST00000511467 STARD9Q9P2P6 4700 aa1.83□□□□□ -2.12
PTPN13-209ENST00000511467 LCE2CQ5TA81 110 aa1.83□□□□□ -2.12
PTPN13-209ENST00000511467 KRTAP4-5Q9BYR2 181 aa1.82□□□□□ -2.12
PTPN13-209ENST00000511467 MT1LQ93083 61 aa1.81□□□□□ -2.12
PTPN13-209ENST00000511467 HERC1Q15751 4861 aa1.8□□□□□ -2.12
PTPN13-209ENST00000511467 MT3P25713 68 aa1.8□□□□□ -2.12
PTPN13-209ENST00000511467 HMCN2Q8NDA2 5059 aa1.8□□□□□ -2.12
PTPN13-209ENST00000511467 KRTAP19-1Q8IUB9 90 aa1.79□□□□□ -2.12
PTPN13-209ENST00000511467 KIAA1109Q2LD37 5005 aa1.78□□□□□ -2.12
PTPN13-209ENST00000511467 FAT3Q8TDW7 4589 aa1.78□□□□□ -2.12
PTPN13-209ENST00000511467 APOBP04114 4563 aaKnown RBP1.78□□□□□ -2.12
PTPN13-209ENST00000511467 DNAH5Q8TE73 4624 aa1.78□□□□□ -2.12
PTPN13-209ENST00000511467 LCE2DQ5TA82 110 aaPredicted RBP1.77□□□□□ -2.13
PTPN13-209ENST00000511467 LCE2BO14633 110 aa1.77□□□□□ -2.13
PTPN13-209ENST00000511467 KRTAP17-1Q9BYP8 105 aa1.77□□□□□ -2.13
PTPN13-209ENST00000511467 MT1EP04732 61 aa1.76□□□□□ -2.13
PTPN13-209ENST00000511467 SPRR2FQ96RM1 72 aa1.76□□□□□ -2.13
PTPN13-209ENST00000511467 PLECQ15149 4684 aaKnown RBP1.75□□□□□ -2.13
PTPN13-209ENST00000511467 LCE1AQ5T7P2 110 aa1.75□□□□□ -2.13
PTPN13-209ENST00000511467 KRTAP19-5Q3LI72 72 aa1.75□□□□□ -2.13
PTPN13-209ENST00000511467 MYCBP2O75592 4640 aa1.75□□□□□ -2.13
PTPN13-209ENST00000511467 UBR4Q5T4S7 5183 aa1.75□□□□□ -2.13
PTPN13-209ENST00000511467 FAT4Q6V0I7 4981 aa1.74□□□□□ -2.13
PTPN13-209ENST00000511467 KRTAP9-8Q9BYQ0 159 aa1.74□□□□□ -2.13
PTPN13-209ENST00000511467 KRTAP19-6Q3LI70 58 aa1.74□□□□□ -2.13
PTPN13-209ENST00000511467 LRP1BQ9NZR2 4599 aa1.74□□□□□ -2.13
PTPN13-209ENST00000511467 KRTAP4-1Q9BYQ7 146 aa1.73□□□□□ -2.13
PTPN13-209ENST00000511467 MT1XP80297 61 aa1.73□□□□□ -2.13
PTPN13-209ENST00000511467 SSPOA2VEC9 5147 aa1.73□□□□□ -2.13
PTPN13-209ENST00000511467 KRTAP9-3Q9BYQ3 159 aa1.71□□□□□ -2.14
PTPN13-209ENST00000511467 KRTAP19-3Q7Z4W3 81 aa1.7□□□□□ -2.14
PTPN13-209ENST00000511467 MT1MQ8N339 61 aa1.69□□□□□ -2.14
PTPN13-209ENST00000511467 FAT1Q14517 4588 aa1.69□□□□□ -2.14
PTPN13-209ENST00000511467 SPRR2EP22531 72 aa1.68□□□□□ -2.14
PTPN13-209ENST00000511467 SPRR2BP35325 72 aa1.68□□□□□ -2.14
PTPN13-209ENST00000511467 SPRR2AP35326 72 aa1.68□□□□□ -2.14
PTPN13-209ENST00000511467 SPRR2DP22532 72 aa1.68□□□□□ -2.14
PTPN13-209ENST00000511467 USH2AO75445 5202 aa1.68□□□□□ -2.14
PTPN13-209ENST00000511467 RNF213Q63HN8 5207 aa1.66□□□□□ -2.14
PTPN13-209ENST00000511467 MT1BP07438 61 aa1.66□□□□□ -2.14
PTPN13-209ENST00000511467 MT1AP04731 61 aa1.63□□□□□ -2.15
PTPN13-209ENST00000511467 LCE3EQ5T5B0 92 aa1.63□□□□□ -2.15
PTPN13-209ENST00000511467 LCE3DQ9BYE3 92 aa1.63□□□□□ -2.15
PTPN13-209ENST00000511467 CRCT1Q9UGL9 99 aa1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 1117.5 ms