RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 FBN3Q75N90 2809 aa1.67□□□□□ -2.14
NEDD4-208ENST00000508342 KRTAP4-5Q9BYR2 181 aa1.67□□□□□ -2.14
NEDD4-208ENST00000508342 DYNC1H1Q14204 4646 aaKnown RBP1.67□□□□□ -2.14
NEDD4-208ENST00000508342 CSMD3Q7Z407 3707 aa1.67□□□□□ -2.14
NEDD4-208ENST00000508342 OTOGQ6ZRI0 2925 aa1.67□□□□□ -2.14
NEDD4-208ENST00000508342 SPRR1AP35321 89 aa1.67□□□□□ -2.14
NEDD4-208ENST00000508342 TPRXLQ17RH7 258 aa1.67□□□□□ -2.14
NEDD4-208ENST00000508342 PRO2289Q9P1D8 64 aa1.67□□□□□ -2.14
NEDD4-208ENST00000508342 ZZEF1O43149 2961 aa1.66□□□□□ -2.14
NEDD4-208ENST00000508342 FBN2P35556 2912 aa1.66□□□□□ -2.14
NEDD4-208ENST00000508342 KRTAP10-8P60410 259 aa1.66□□□□□ -2.14
NEDD4-208ENST00000508342 MMP24-AS1A0A0U1RRL7 71 aa1.66□□□□□ -2.14
NEDD4-208ENST00000508342 KRTAP10-10P60014 251 aa1.66□□□□□ -2.14
NEDD4-208ENST00000508342 HRNRQ86YZ3 2850 aaPredicted RBP1.66□□□□□ -2.14
NEDD4-208ENST00000508342 TNP1P09430 55 aa1.65□□□□□ -2.14
NEDD4-208ENST00000508342 KRTAP11-1Q8IUC1 163 aa1.65□□□□□ -2.14
NEDD4-208ENST00000508342 FAT2Q9NYQ8 4349 aa1.65□□□□□ -2.15
NEDD4-208ENST00000508342 PKHD1P08F94 4074 aa1.65□□□□□ -2.15
NEDD4-208ENST00000508342 CYSTM1Q9H1C7 97 aa1.65□□□□□ -2.15
NEDD4-208ENST00000508342 LINC00472Q9H8W2 130 aa1.65□□□□□ -2.15
NEDD4-208ENST00000508342 KRTAP13-2Q52LG2 175 aa1.64□□□□□ -2.15
NEDD4-208ENST00000508342 KRTAP25-1Q3LHN0 102 aa1.64□□□□□ -2.15
NEDD4-208ENST00000508342 KRTAP5-2Q701N4 177 aa1.64□□□□□ -2.15
NEDD4-208ENST00000508342 DNAH11Q96DT5 4516 aa1.63□□□□□ -2.15
NEDD4-208ENST00000508342 ADGRG4Q8IZF6 3080 aa1.63□□□□□ -2.15
NEDD4-208ENST00000508342 SACSQ9NZJ4 4579 aa1.62□□□□□ -2.15
NEDD4-208ENST00000508342 XP32Q5T750 250 aa1.62□□□□□ -2.15
NEDD4-208ENST00000508342 KRTAP3-1Q9BYR8 98 aa1.62□□□□□ -2.15
NEDD4-208ENST00000508342 INE1O15225 51 aa1.62□□□□□ -2.15
NEDD4-208ENST00000508342 MUC5BQ9HC84 5762 aaPredicted RBP1.62□□□□□ -2.15
NEDD4-208ENST00000508342 FBN1P35555 2871 aaKnown RBP1.61□□□□□ -2.15
NEDD4-208ENST00000508342 USH2AO75445 5202 aa1.61□□□□□ -2.15
NEDD4-208ENST00000508342 P0C880 135 aa1.6□□□□□ -2.15
NEDD4-208ENST00000508342 MEGF8Q7Z7M0 2845 aa1.6□□□□□ -2.15
NEDD4-208ENST00000508342 DNAH10Q8IVF4 4471 aa1.6□□□□□ -2.15
NEDD4-208ENST00000508342 FAT3Q8TDW7 4589 aa1.59□□□□□ -2.15
NEDD4-208ENST00000508342 KRTAP1-4P0C5Y4 121 aa1.59□□□□□ -2.15
NEDD4-208ENST00000508342 KRTAP13-3Q3SY46 172 aa1.59□□□□□ -2.16
NEDD4-208ENST00000508342 TGP01266 2768 aa1.59□□□□□ -2.16
NEDD4-208ENST00000508342 KRTAP7-1Q8IUC3 87 aa1.59□□□□□ -2.16
NEDD4-208ENST00000508342 DNAH5Q8TE73 4624 aa1.59□□□□□ -2.16
NEDD4-208ENST00000508342 ZANQ9Y493 2812 aa1.58□□□□□ -2.16
NEDD4-208ENST00000508342 KRTAP15-1Q3LI76 137 aa1.58□□□□□ -2.16
NEDD4-208ENST00000508342 KRTAP13-1Q8IUC0 172 aa1.58□□□□□ -2.16
NEDD4-208ENST00000508342 LRP1BQ9NZR2 4599 aa1.58□□□□□ -2.16
NEDD4-208ENST00000508342 DNAH8Q96JB1 4490 aa1.57□□□□□ -2.16
NEDD4-208ENST00000508342 COL7A1Q02388 2944 aa1.57□□□□□ -2.16
NEDD4-208ENST00000508342 MXRA5Q9NR99 2828 aa1.56□□□□□ -2.16
NEDD4-208ENST00000508342 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.55□□□□□ -2.16
NEDD4-208ENST00000508342 C10orf95Q9H7T3 257 aa1.55□□□□□ -2.16
NEDD4-208ENST00000508342 PKD1P98161 4303 aa1.55□□□□□ -2.16
NEDD4-208ENST00000508342 FAT1Q14517 4588 aa1.55□□□□□ -2.16
NEDD4-208ENST00000508342 HSPG2P98160 4391 aa1.54□□□□□ -2.16
NEDD4-208ENST00000508342 MYCBP2O75592 4640 aa1.54□□□□□ -2.16
NEDD4-208ENST00000508342 PP632Q6XCG6 107 aa1.53□□□□□ -2.16
NEDD4-208ENST00000508342 TNXBP22105 4242 aa1.53□□□□□ -2.16
NEDD4-208ENST00000508342 MT1HL1P0DM35 61 aa1.53□□□□□ -2.16
NEDD4-208ENST00000508342 KRTAP9-9Q9BYP9 154 aa1.53□□□□□ -2.16
NEDD4-208ENST00000508342 KRTAP9-4Q9BYQ2 154 aa1.53□□□□□ -2.16
NEDD4-208ENST00000508342 A8MU10 97 aa1.52□□□□□ -2.17
NEDD4-208ENST00000508342 KRTAP12-2P59991 146 aa1.52□□□□□ -2.17
NEDD4-208ENST00000508342 LCE4AQ5TA78 99 aa1.52□□□□□ -2.17
NEDD4-208ENST00000508342 MUC17Q685J3 4493 aa1.51□□□□□ -2.17
NEDD4-208ENST00000508342 LRP2P98164 4655 aa1.5□□□□□ -2.17
NEDD4-208ENST00000508342 APOBP04114 4563 aaKnown RBP1.48□□□□□ -2.17
NEDD4-208ENST00000508342 KRTAP9-6A0A140TA67 174 aa1.48□□□□□ -2.17
NEDD4-208ENST00000508342 KRTAP9-7A8MTY7 169 aa1.48□□□□□ -2.17
NEDD4-208ENST00000508342 MT3P25713 68 aa1.47□□□□□ -2.17
NEDD4-208ENST00000508342 KRTAP10-4P60372 401 aaPredicted RBP1.47□□□□□ -2.17
NEDD4-208ENST00000508342 KRTAP19-1Q8IUB9 90 aa1.47□□□□□ -2.17
NEDD4-208ENST00000508342 MDN1Q9NU22 5596 aa1.46□□□□□ -2.18
NEDD4-208ENST00000508342 KMT2DO14686 5537 aa1.46□□□□□ -2.18
NEDD4-208ENST00000508342 LOC100996750A0A140TA64 210 aa1.44□□□□□ -2.18
NEDD4-208ENST00000508342 KRTAP4-6Q9BYQ5 205 aa1.44□□□□□ -2.18
NEDD4-208ENST00000508342 H0YAA0 97 aa1.43□□□□□ -2.18
NEDD4-208ENST00000508342 HMCN1Q96RW7 5635 aa1.41□□□□□ -2.18
NEDD4-208ENST00000508342 KRTAP10-6P60371 365 aaPredicted RBP1.41□□□□□ -2.18
NEDD4-208ENST00000508342 MT1HP80294 61 aa1.41□□□□□ -2.18
NEDD4-208ENST00000508342 KRTAP9-2Q9BYQ4 174 aa1.4□□□□□ -2.18
NEDD4-208ENST00000508342 SPRR5A0A1B0GTR4 108 aa1.4□□□□□ -2.19
NEDD4-208ENST00000508342 CRCT1Q9UGL9 99 aa1.4□□□□□ -2.19
NEDD4-208ENST00000508342 KRTAP4-12Q9BQ66 201 aa1.4□□□□□ -2.19
NEDD4-208ENST00000508342 KRTAP9-3Q9BYQ3 159 aa1.39□□□□□ -2.19
NEDD4-208ENST00000508342 AHNAK2Q8IVF2 5795 aa1.38□□□□□ -2.19
NEDD4-208ENST00000508342 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.38□□□□□ -2.19
NEDD4-208ENST00000508342 LCE5AQ5TCM9 118 aa1.37□□□□□ -2.19
NEDD4-208ENST00000508342 LPAP08519 4548 aa1.37□□□□□ -2.19
NEDD4-208ENST00000508342 KRTAP13-4Q3LI77 160 aa1.35□□□□□ -2.19
NEDD4-208ENST00000508342 KRTAP8-1Q8IUC2 63 aa1.35□□□□□ -2.19
NEDD4-208ENST00000508342 LRP1Q07954 4544 aaKnown RBP1.34□□□□□ -2.19
NEDD4-208ENST00000508342 SPRR2EP22531 72 aa1.34□□□□□ -2.19
NEDD4-208ENST00000508342 SPRR2BP35325 72 aa1.34□□□□□ -2.19
NEDD4-208ENST00000508342 SPRR2AP35326 72 aa1.34□□□□□ -2.19
NEDD4-208ENST00000508342 KRTAP4-1Q9BYQ7 146 aa1.34□□□□□ -2.19
NEDD4-208ENST00000508342 KRTAP4-8Q9BYQ9 185 aa1.34□□□□□ -2.2
NEDD4-208ENST00000508342 KRTAP10-12P60413 245 aa1.33□□□□□ -2.2
NEDD4-208ENST00000508342 FCGBPQ9Y6R7 5405 aaPredicted RBP1.32□□□□□ -2.2
NEDD4-208ENST00000508342 SPRR2DP22532 72 aa1.3□□□□□ -2.2
NEDD4-208ENST00000508342 SPRR2FQ96RM1 72 aa1.3□□□□□ -2.2
NEDD4-208ENST00000508342 KRTAP12-1P59990 96 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms