RNA–Protein interactions for RNA: ENST00000507875.5

CLCN3-206, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2

Gene CLCN3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-206ENST00000507875 A0A087WSZ3 146 aa4.1□□□□□ -1.75
CLCN3-206ENST00000507875 K7EQZ3 153 aa4.09□□□□□ -1.76
CLCN3-206ENST00000507875 KRTAP10-4P60372 401 aaPredicted RBP4.08□□□□□ -1.76
CLCN3-206ENST00000507875 SPAG11AQ6PDA7 123 aa4.06□□□□□ -1.76
CLCN3-206ENST00000507875 KRTAP1-4P0C5Y4 121 aa4.05□□□□□ -1.76
CLCN3-206ENST00000507875 LCE1AQ5T7P2 110 aa4.05□□□□□ -1.76
CLCN3-206ENST00000507875 FAT1Q14517 4588 aa4.05□□□□□ -1.76
CLCN3-206ENST00000507875 SPINK7P58062 85 aa4.05□□□□□ -1.76
CLCN3-206ENST00000507875 LCE3BQ5TA77 95 aa4.05□□□□□ -1.76
CLCN3-206ENST00000507875 RPS29P62273 56 aaKnown RBP4.04□□□□□ -1.76
CLCN3-206ENST00000507875 LINC00472Q9H8W2 130 aa4.04□□□□□ -1.76
CLCN3-206ENST00000507875 KRTAP25-1Q3LHN0 102 aa4.02□□□□□ -1.77
CLCN3-206ENST00000507875 PKHD1L1Q86WI1 4243 aa4.02□□□□□ -1.77
CLCN3-206ENST00000507875 VPS13BQ7Z7G8 4022 aa4.01□□□□□ -1.77
CLCN3-206ENST00000507875 DMBT1Q9UGM3 2413 aaPredicted RBP4.01□□□□□ -1.77
CLCN3-206ENST00000507875 KRTAP13-2Q52LG2 175 aa4.01□□□□□ -1.77
CLCN3-206ENST00000507875 WFDC13Q8IUB5 93 aa4.01□□□□□ -1.77
CLCN3-206ENST00000507875 ANAPC11Q9NYG5 84 aa4.01□□□□□ -1.77
CLCN3-206ENST00000507875 SPINK1P00995 79 aa4□□□□□ -1.77
CLCN3-206ENST00000507875 Q5W150 140 aa3.99□□□□□ -1.77
CLCN3-206ENST00000507875 Q96NJ1 140 aa3.99□□□□□ -1.77
CLCN3-206ENST00000507875 MYCBP2O75592 4640 aa3.99□□□□□ -1.77
CLCN3-206ENST00000507875 FLG2Q5D862 2391 aaPredicted RBP3.99□□□□□ -1.77
CLCN3-206ENST00000507875 HERC1Q15751 4861 aa3.98□□□□□ -1.77
CLCN3-206ENST00000507875 NDUFB1O75438 58 aa3.98□□□□□ -1.77
CLCN3-206ENST00000507875 LINC00304Q8N9R0 145 aa3.97□□□□□ -1.77
CLCN3-206ENST00000507875 ZCCHC13Q8WW36 166 aaKnown RBP3.97□□□□□ -1.77
CLCN3-206ENST00000507875 LINC01558Q9Y6Z2 57 aa3.97□□□□□ -1.77
CLCN3-206ENST00000507875 MMP24-AS1A0A0U1RRL7 71 aa3.96□□□□□ -1.78
CLCN3-206ENST00000507875 KRTAP10-8P60410 259 aa3.96□□□□□ -1.78
CLCN3-206ENST00000507875 LCE1FQ5T754 118 aa3.95□□□□□ -1.78
CLCN3-206ENST00000507875 SPANXA2-OT1Q8N9U9 137 aa3.94□□□□□ -1.78
CLCN3-206ENST00000507875 LINC00208Q96KT6 92 aa3.94□□□□□ -1.78
CLCN3-206ENST00000507875 H0Y9P7 68 aa3.92□□□□□ -1.78
CLCN3-206ENST00000507875 A0A1B0GU33 70 aa3.92□□□□□ -1.78
CLCN3-206ENST00000507875 TP53AIP1Q9HCN2 124 aa3.91□□□□□ -1.78
CLCN3-206ENST00000507875 DMAC1Q96GE9 116 aa3.9□□□□□ -1.78
CLCN3-206ENST00000507875 SPINT4Q6UDR6 99 aa3.9□□□□□ -1.79
CLCN3-206ENST00000507875 LRP1Q07954 4544 aaKnown RBP3.89□□□□□ -1.79
CLCN3-206ENST00000507875 MRPL34Q9BQ48 92 aaKnown RBP3.89□□□□□ -1.79
CLCN3-206ENST00000507875 FAT3Q8TDW7 4589 aa3.88□□□□□ -1.79
CLCN3-206ENST00000507875 MT1HL1P0DM35 61 aa3.88□□□□□ -1.79
CLCN3-206ENST00000507875 R4GN34 69 aa3.84□□□□□ -1.8
CLCN3-206ENST00000507875 HMCN2Q8NDA2 5059 aa3.83□□□□□ -1.8
CLCN3-206ENST00000507875 PCOTHQ58A44 107 aa3.82□□□□□ -1.8
CLCN3-206ENST00000507875 KRTAP13-3Q3SY46 172 aa3.81□□□□□ -1.8
CLCN3-206ENST00000507875 SPATA8Q6RVD6 105 aa3.8□□□□□ -1.8
CLCN3-206ENST00000507875 COA5Q86WW8 74 aa3.79□□□□□ -1.8
CLCN3-206ENST00000507875 UQCR11O14957 56 aa3.78□□□□□ -1.8
CLCN3-206ENST00000507875 TNXBP22105 4242 aa3.77□□□□□ -1.81
CLCN3-206ENST00000507875 UBR4Q5T4S7 5183 aa3.76□□□□□ -1.81
CLCN3-206ENST00000507875 TPRXLQ17RH7 258 aa3.76□□□□□ -1.81
CLCN3-206ENST00000507875 LCE1DQ5T752 114 aa3.76□□□□□ -1.81
CLCN3-206ENST00000507875 KRTAP9-8Q9BYQ0 159 aa3.76□□□□□ -1.81
CLCN3-206ENST00000507875 PRO2289Q9P1D8 64 aa3.73□□□□□ -1.81
CLCN3-206ENST00000507875 HRES1P13985 223 aa3.72□□□□□ -1.81
CLCN3-206ENST00000507875 LRP2P98164 4655 aa3.72□□□□□ -1.81
CLCN3-206ENST00000507875 C9orf92A6NGG3 77 aa3.7□□□□□ -1.82
CLCN3-206ENST00000507875 RPL37P61927 97 aaKnown RBP3.7□□□□□ -1.82
CLCN3-206ENST00000507875 ACYP2P14621 99 aa3.7□□□□□ -1.82
CLCN3-206ENST00000507875 A0A1B0GU69 56 aa3.69□□□□□ -1.82
CLCN3-206ENST00000507875 MT3P25713 68 aa3.68□□□□□ -1.82
CLCN3-206ENST00000507875 LCE3CQ5T5A8 94 aa3.68□□□□□ -1.82
CLCN3-206ENST00000507875 KRTAP2-2Q9BYT5 123 aa3.68□□□□□ -1.82
CLCN3-206ENST00000507875 KRTAP4-8A0A0G2JLE6 195 aa3.67□□□□□ -1.82
CLCN3-206ENST00000507875 KRTAP5-3Q6L8H2 238 aa3.67□□□□□ -1.82
CLCN3-206ENST00000507875 CRIPTQ9P021 101 aa3.67□□□□□ -1.82
CLCN3-206ENST00000507875 RNF213Q63HN8 5207 aa3.66□□□□□ -1.82
CLCN3-206ENST00000507875 LPAP08519 4548 aa3.62□□□□□ -1.83
CLCN3-206ENST00000507875 KRTAP4-11Q9BYQ6 195 aa3.59□□□□□ -1.84
CLCN3-206ENST00000507875 KRTAP4-9Q9BYQ8 210 aa3.56□□□□□ -1.84
CLCN3-206ENST00000507875 MUC2Q02817 5179 aa3.54□□□□□ -1.84
CLCN3-206ENST00000507875 COX6B2Q6YFQ2 88 aa3.53□□□□□ -1.84
CLCN3-206ENST00000507875 MUC17Q685J3 4493 aa3.53□□□□□ -1.84
CLCN3-206ENST00000507875 KRTAP10-12P60413 245 aa3.52□□□□□ -1.85
CLCN3-206ENST00000507875 KRTAP4-7Q9BYR0 210 aa3.49□□□□□ -1.85
CLCN3-206ENST00000507875 H1FX-AS1Q4G0G2 97 aa3.47□□□□□ -1.85
CLCN3-206ENST00000507875 FAT4Q6V0I7 4981 aa3.44□□□□□ -1.86
CLCN3-206ENST00000507875 KRTAP10-6P60371 365 aaPredicted RBP3.44□□□□□ -1.86
CLCN3-206ENST00000507875 KRTAP4-1Q9BYQ7 146 aa3.43□□□□□ -1.86
CLCN3-206ENST00000507875 S4R3F8 94 aa3.42□□□□□ -1.86
CLCN3-206ENST00000507875 LCE3EQ5T5B0 92 aa3.41□□□□□ -1.86
CLCN3-206ENST00000507875 KRTAP19-2Q3LHN2 52 aa3.38□□□□□ -1.87
CLCN3-206ENST00000507875 KRTAP4-2Q9BYR5 136 aa3.38□□□□□ -1.87
CLCN3-206ENST00000507875 H0YAA0 97 aa3.37□□□□□ -1.87
CLCN3-206ENST00000507875 C10orf95Q9H7T3 257 aa3.35□□□□□ -1.87
CLCN3-206ENST00000507875 PLAC4Q8WY50 150 aa3.34□□□□□ -1.87
CLCN3-206ENST00000507875 INE1O15225 51 aa3.33□□□□□ -1.88
CLCN3-206ENST00000507875 M0R2T5 61 aa3.31□□□□□ -1.88
CLCN3-206ENST00000507875 MT1HP80294 61 aa3.3□□□□□ -1.88
CLCN3-206ENST00000507875 KRTAP13-4Q3LI77 160 aa3.27□□□□□ -1.89
CLCN3-206ENST00000507875 FLGP20930 4061 aaPredicted RBP3.23□□□□□ -1.89
CLCN3-206ENST00000507875 FSIP2Q5CZC0 6907 aa3.23□□□□□ -1.89
CLCN3-206ENST00000507875 A0A0D9SG42 100 aa3.22□□□□□ -1.89
CLCN3-206ENST00000507875 CRCT1Q9UGL9 99 aa3.21□□□□□ -1.9
CLCN3-206ENST00000507875 M0QZ58 72 aa3.2□□□□□ -1.9
CLCN3-206ENST00000507875 KRTAP12-2P59991 146 aa3.16□□□□□ -1.9
CLCN3-206ENST00000507875 KRTAP12-1P59990 96 aa3.15□□□□□ -1.91
CLCN3-206ENST00000507875 MT2AP02795 61 aa3.12□□□□□ -1.91
CLCN3-206ENST00000507875 PP632Q6XCG6 107 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms