RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 CUBNO60494 3623 aa2.83□□□□□ -1.96
USP54-216ENST00000498143 MT1HL1P0DM35 61 aa2.83□□□□□ -1.96
USP54-216ENST00000498143 DNAH3Q8TD57 4116 aa2.81□□□□□ -1.96
USP54-216ENST00000498143 KRTAP15-1Q3LI76 137 aa2.8□□□□□ -1.96
USP54-216ENST00000498143 GPR98Q8WXG9 6306 aa2.8□□□□□ -1.96
USP54-216ENST00000498143 AKAP9Q99996 3911 aa2.8□□□□□ -1.96
USP54-216ENST00000498143 ZNF469Q96JG9 3925 aaPredicted RBP2.79□□□□□ -1.96
USP54-216ENST00000498143 VPS13CQ709C8 3753 aa2.78□□□□□ -1.96
USP54-216ENST00000498143 KRTAP20-1Q3LI63 56 aa2.78□□□□□ -1.96
USP54-216ENST00000498143 C10orf95Q9H7T3 257 aa2.77□□□□□ -1.97
USP54-216ENST00000498143 PRKDCP78527 4128 aaKnown RBP2.76□□□□□ -1.97
USP54-216ENST00000498143 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.74□□□□□ -1.97
USP54-216ENST00000498143 ALMS1Q8TCU4 4167 aa2.73□□□□□ -1.97
USP54-216ENST00000498143 H0YAA0 97 aa2.72□□□□□ -1.97
USP54-216ENST00000498143 SPRR5A0A1B0GTR4 108 aa2.71□□□□□ -1.98
USP54-216ENST00000498143 SYNE2Q8WXH0 6885 aaKnown RBP2.71□□□□□ -1.98
USP54-216ENST00000498143 PLECQ15149 4684 aaKnown RBP2.71□□□□□ -1.98
USP54-216ENST00000498143 DNAH11Q96DT5 4516 aa2.71□□□□□ -1.98
USP54-216ENST00000498143 MACF1Q9UPN3 7388 aaKnown RBP2.7□□□□□ -1.98
USP54-216ENST00000498143 S4R3F8 94 aa2.7□□□□□ -1.98
USP54-216ENST00000498143 HERC1Q15751 4861 aa2.68□□□□□ -1.98
USP54-216ENST00000498143 M0QZ58 72 aa2.67□□□□□ -1.98
USP54-216ENST00000498143 DNAH1Q9P2D7 4330 aa2.67□□□□□ -1.98
USP54-216ENST00000498143 KRTAP7-1Q8IUC3 87 aa2.65□□□□□ -1.98
USP54-216ENST00000498143 ANK2Q01484 3957 aa2.65□□□□□ -1.99
USP54-216ENST00000498143 FAT3Q8TDW7 4589 aa2.64□□□□□ -1.99
USP54-216ENST00000498143 RNF213Q63HN8 5207 aa2.63□□□□□ -1.99
USP54-216ENST00000498143 DYNC2H1Q8NCM8 4307 aaKnown RBP2.63□□□□□ -1.99
USP54-216ENST00000498143 KRTAP13-3Q3SY46 172 aa2.61□□□□□ -1.99
USP54-216ENST00000498143 DNAH9Q9NYC9 4486 aa2.59□□□□□ -1.99
USP54-216ENST00000498143 LOC100996750A0A140TA64 210 aa2.59□□□□□ -1.99
USP54-216ENST00000498143 KRTAP10-6P60371 365 aaPredicted RBP2.59□□□□□ -1.99
USP54-216ENST00000498143 KRTAP10-4P60372 401 aaPredicted RBP2.59□□□□□ -1.99
USP54-216ENST00000498143 KRTAP4-6Q9BYQ5 205 aa2.59□□□□□ -1.99
USP54-216ENST00000498143 SACSQ9NZJ4 4579 aa2.59□□□□□ -1.99
USP54-216ENST00000498143 KRTAP13-1Q8IUC0 172 aa2.58□□□□□ -2
USP54-216ENST00000498143 DNAH5Q8TE73 4624 aa2.58□□□□□ -2
USP54-216ENST00000498143 LRP1BQ9NZR2 4599 aa2.58□□□□□ -2
USP54-216ENST00000498143 TNP1P09430 55 aa2.56□□□□□ -2
USP54-216ENST00000498143 LCE4AQ5TA78 99 aa2.56□□□□□ -2
USP54-216ENST00000498143 LCE3BQ5TA77 95 aa2.55□□□□□ -2
USP54-216ENST00000498143 NEBP20929 6669 aa2.55□□□□□ -2
USP54-216ENST00000498143 KRTAP1-4P0C5Y4 121 aa2.54□□□□□ -2
USP54-216ENST00000498143 RPS29P62273 56 aaKnown RBP2.54□□□□□ -2
USP54-216ENST00000498143 KRTAP13-2Q52LG2 175 aa2.54□□□□□ -2
USP54-216ENST00000498143 DYNC1H1Q14204 4646 aaKnown RBP2.54□□□□□ -2
USP54-216ENST00000498143 KRTAP19-1Q8IUB9 90 aa2.53□□□□□ -2
USP54-216ENST00000498143 KRTAP2-3P0C7H8 128 aa2.53□□□□□ -2
USP54-216ENST00000498143 SPRR2EP22531 72 aa2.53□□□□□ -2
USP54-216ENST00000498143 SPRR2BP35325 72 aa2.53□□□□□ -2
USP54-216ENST00000498143 SPRR2AP35326 72 aa2.53□□□□□ -2
USP54-216ENST00000498143 KRTAP2-4Q9BYR9 128 aa2.53□□□□□ -2
USP54-216ENST00000498143 KRTAP12-2P59991 146 aa2.52□□□□□ -2.01
USP54-216ENST00000498143 LRP2P98164 4655 aa2.52□□□□□ -2.01
USP54-216ENST00000498143 DNAH10Q8IVF4 4471 aa2.51□□□□□ -2.01
USP54-216ENST00000498143 MT1HP80294 61 aa2.5□□□□□ -2.01
USP54-216ENST00000498143 KRTAP6-3Q3LI67 103 aa2.5□□□□□ -2.01
USP54-216ENST00000498143 SPRR2FQ96RM1 72 aa2.5□□□□□ -2.01
USP54-216ENST00000498143 KRTAP4-8Q9BYQ9 185 aa2.49□□□□□ -2.01
USP54-216ENST00000498143 HUWE1Q7Z6Z7 4374 aaKnown RBP2.47□□□□□ -2.01
USP54-216ENST00000498143 FAT1Q14517 4588 aa2.47□□□□□ -2.01
USP54-216ENST00000498143 SPRR2DP22532 72 aa2.46□□□□□ -2.01
USP54-216ENST00000498143 DNAH6Q9C0G6 4158 aa2.45□□□□□ -2.02
USP54-216ENST00000498143 MT3P25713 68 aa2.45□□□□□ -2.02
USP54-216ENST00000498143 KRTAP4-12Q9BQ66 201 aa2.45□□□□□ -2.02
USP54-216ENST00000498143 KRTAP8-1Q8IUC2 63 aa2.43□□□□□ -2.02
USP54-216ENST00000498143 MYCBP2O75592 4640 aa2.43□□□□□ -2.02
USP54-216ENST00000498143 HMCN2Q8NDA2 5059 aa2.42□□□□□ -2.02
USP54-216ENST00000498143 KMT2DO14686 5537 aa2.42□□□□□ -2.02
USP54-216ENST00000498143 DNAH7Q8WXX0 4024 aa2.42□□□□□ -2.02
USP54-216ENST00000498143 KRTAP2-2Q9BYT5 123 aa2.41□□□□□ -2.02
USP54-216ENST00000498143 KRTAP2-1Q9BYU5 128 aa2.41□□□□□ -2.02
USP54-216ENST00000498143 KRTAP12-1P59990 96 aa2.39□□□□□ -2.03
USP54-216ENST00000498143 CSMD3Q7Z407 3707 aa2.39□□□□□ -2.03
USP54-216ENST00000498143 KRTAP13-4Q3LI77 160 aa2.39□□□□□ -2.03
USP54-216ENST00000498143 APOBP04114 4563 aaKnown RBP2.39□□□□□ -2.03
USP54-216ENST00000498143 STARD9Q9P2P6 4700 aa2.39□□□□□ -2.03
USP54-216ENST00000498143 PKHD1L1Q86WI1 4243 aa2.38□□□□□ -2.03
USP54-216ENST00000498143 FAT4Q6V0I7 4981 aa2.37□□□□□ -2.03
USP54-216ENST00000498143 CMYA5Q8N3K9 4069 aa2.36□□□□□ -2.03
USP54-216ENST00000498143 HSPG2P98160 4391 aa2.35□□□□□ -2.03
USP54-216ENST00000498143 KRTAP9-4Q9BYQ2 154 aa2.35□□□□□ -2.03
USP54-216ENST00000498143 KRTAP9-9Q9BYP9 154 aa2.35□□□□□ -2.03
USP54-216ENST00000498143 FAT2Q9NYQ8 4349 aa2.34□□□□□ -2.04
USP54-216ENST00000498143 PKHD1P08F94 4074 aa2.33□□□□□ -2.04
USP54-216ENST00000498143 DSTQ03001 7570 aaKnown RBP2.33□□□□□ -2.04
USP54-216ENST00000498143 LYSTQ99698 3801 aa2.33□□□□□ -2.04
USP54-216ENST00000498143 MUC2Q02817 5179 aa2.32□□□□□ -2.04
USP54-216ENST00000498143 FRAS1Q86XX4 4008 aa2.31□□□□□ -2.04
USP54-216ENST00000498143 KRTAP9-3Q9BYQ3 159 aa2.31□□□□□ -2.04
USP54-216ENST00000498143 KRTAP4-1Q9BYQ7 146 aa2.3□□□□□ -2.04
USP54-216ENST00000498143 LCE1DQ5T752 114 aa2.3□□□□□ -2.04
USP54-216ENST00000498143 KMT2AQ03164 3969 aa2.29□□□□□ -2.04
USP54-216ENST00000498143 MT2AP02795 61 aa2.29□□□□□ -2.04
USP54-216ENST00000498143 VPS13BQ7Z7G8 4022 aa2.28□□□□□ -2.04
USP54-216ENST00000498143 VPS13DQ5THJ4 4388 aa2.26□□□□□ -2.05
USP54-216ENST00000498143 LCE5AQ5TCM9 118 aa2.26□□□□□ -2.05
USP54-216ENST00000498143 KRTAP4-8A0A0G2JLE6 195 aa2.26□□□□□ -2.05
USP54-216ENST00000498143 DNAH17Q9UFH2 4485 aa2.24□□□□□ -2.05
USP54-216ENST00000498143 LRP1Q07954 4544 aaKnown RBP2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms