RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 K7ERS5 55 aa3.66□□□□□ -1.82
SSBP1-213ENST00000496622 ZNF861PO60384 105 aa3.65□□□□□ -1.82
SSBP1-213ENST00000496622 A0A087WSZ3 146 aa3.65□□□□□ -1.83
SSBP1-213ENST00000496622 A8MUU9 505 aa3.65□□□□□ -1.83
SSBP1-213ENST00000496622 SMR3BP02814 79 aaPredicted RBP3.65□□□□□ -1.83
SSBP1-213ENST00000496622 SPATA8Q6RVD6 105 aa3.65□□□□□ -1.83
SSBP1-213ENST00000496622 DYNC1H1Q14204 4646 aaKnown RBP3.64□□□□□ -1.83
SSBP1-213ENST00000496622 SPRR4Q96PI1 79 aa3.64□□□□□ -1.83
SSBP1-213ENST00000496622 H3BQ85 93 aa3.63□□□□□ -1.83
SSBP1-213ENST00000496622 Q8NBF4 154 aa3.63□□□□□ -1.83
SSBP1-213ENST00000496622 IGLV7-46A0A075B6I9 117 aa3.62□□□□□ -1.83
SSBP1-213ENST00000496622 IGLV7-43P04211 117 aa3.61□□□□□ -1.83
SSBP1-213ENST00000496622 IGKV2-30P06310 120 aa3.61□□□□□ -1.83
SSBP1-213ENST00000496622 RPL37AP61513 92 aaKnown RBP3.61□□□□□ -1.83
SSBP1-213ENST00000496622 Q6ZSA8 131 aa3.61□□□□□ -1.83
SSBP1-213ENST00000496622 A0A1B0GVY2 172 aa3.6□□□□□ -1.83
SSBP1-213ENST00000496622 APOBP04114 4563 aaKnown RBP3.6□□□□□ -1.83
SSBP1-213ENST00000496622 H3BPC8 53 aa3.59□□□□□ -1.83
SSBP1-213ENST00000496622 K7EQZ3 153 aa3.59□□□□□ -1.83
SSBP1-213ENST00000496622 SPRR1BP22528 89 aa3.59□□□□□ -1.83
SSBP1-213ENST00000496622 DSCR10P59022 87 aa3.58□□□□□ -1.84
SSBP1-213ENST00000496622 RNF213Q63HN8 5207 aa3.58□□□□□ -1.84
SSBP1-213ENST00000496622 FLG2Q5D862 2391 aaPredicted RBP3.58□□□□□ -1.84
SSBP1-213ENST00000496622 IGLV8-61A0A075B6I0 122 aa3.57□□□□□ -1.84
SSBP1-213ENST00000496622 UQCR11O14957 56 aa3.57□□□□□ -1.84
SSBP1-213ENST00000496622 LINC00472Q9H8W2 130 aa3.57□□□□□ -1.84
SSBP1-213ENST00000496622 HMCN2Q8NDA2 5059 aa3.57□□□□□ -1.84
SSBP1-213ENST00000496622 HRES1P13985 223 aa3.57□□□□□ -1.84
SSBP1-213ENST00000496622 SPINT4Q6UDR6 99 aa3.57□□□□□ -1.84
SSBP1-213ENST00000496622 LRP1Q07954 4544 aaKnown RBP3.56□□□□□ -1.84
SSBP1-213ENST00000496622 KRTAP13-2Q52LG2 175 aa3.55□□□□□ -1.84
SSBP1-213ENST00000496622 SPINK6Q6UWN8 80 aa3.55□□□□□ -1.84
SSBP1-213ENST00000496622 A0A1B0GU69 56 aa3.55□□□□□ -1.84
SSBP1-213ENST00000496622 WFDC13Q8IUB5 93 aa3.55□□□□□ -1.84
SSBP1-213ENST00000496622 DMAC1Q96GE9 116 aa3.55□□□□□ -1.84
SSBP1-213ENST00000496622 MYCBP2O75592 4640 aa3.55□□□□□ -1.84
SSBP1-213ENST00000496622 KRTAP1-4P0C5Y4 121 aa3.54□□□□□ -1.84
SSBP1-213ENST00000496622 PCOTHQ58A44 107 aa3.54□□□□□ -1.84
SSBP1-213ENST00000496622 Q5W150 140 aa3.54□□□□□ -1.84
SSBP1-213ENST00000496622 A0A1B0GVX0 72 aa3.53□□□□□ -1.84
SSBP1-213ENST00000496622 LCE1AQ5T7P2 110 aa3.53□□□□□ -1.84
SSBP1-213ENST00000496622 Q96NJ1 140 aa3.52□□□□□ -1.85
SSBP1-213ENST00000496622 HSPG2P98160 4391 aa3.52□□□□□ -1.85
SSBP1-213ENST00000496622 CRIPTQ9P021 101 aa3.5□□□□□ -1.85
SSBP1-213ENST00000496622 KRTAP10-4P60372 401 aaPredicted RBP3.48□□□□□ -1.85
SSBP1-213ENST00000496622 KRTAP29-1A8MX34 341 aaPredicted RBP3.47□□□□□ -1.85
SSBP1-213ENST00000496622 TYMSOSQ8TAI1 123 aa3.47□□□□□ -1.85
SSBP1-213ENST00000496622 PKHD1L1Q86WI1 4243 aa3.47□□□□□ -1.85
SSBP1-213ENST00000496622 LINC00304Q8N9R0 145 aa3.47□□□□□ -1.85
SSBP1-213ENST00000496622 FAT3Q8TDW7 4589 aa3.47□□□□□ -1.85
SSBP1-213ENST00000496622 SSBP3-AS1Q7Z2R9 100 aa3.46□□□□□ -1.86
SSBP1-213ENST00000496622 IGKV2D-30A0A075B6S6 120 aa3.46□□□□□ -1.86
SSBP1-213ENST00000496622 MMP24-AS1A0A0U1RRL7 71 aa3.45□□□□□ -1.86
SSBP1-213ENST00000496622 SSPOA2VEC9 5147 aa3.43□□□□□ -1.86
SSBP1-213ENST00000496622 Q5VSD8 79 aa3.42□□□□□ -1.86
SSBP1-213ENST00000496622 CAMK2N1Q7Z7J9 78 aa3.42□□□□□ -1.86
SSBP1-213ENST00000496622 TNXBP22105 4242 aa3.39□□□□□ -1.87
SSBP1-213ENST00000496622 C9orf92A6NGG3 77 aa3.39□□□□□ -1.87
SSBP1-213ENST00000496622 SPINK1P00995 79 aa3.39□□□□□ -1.87
SSBP1-213ENST00000496622 MRPL34Q9BQ48 92 aaKnown RBP3.39□□□□□ -1.87
SSBP1-213ENST00000496622 ACYP2P14621 99 aa3.38□□□□□ -1.87
SSBP1-213ENST00000496622 KRTAP20-1Q3LI63 56 aa3.37□□□□□ -1.87
SSBP1-213ENST00000496622 LPAP08519 4548 aa3.35□□□□□ -1.87
SSBP1-213ENST00000496622 GPR98Q8WXG9 6306 aa3.34□□□□□ -1.87
SSBP1-213ENST00000496622 KRTAP10-8P60410 259 aa3.32□□□□□ -1.88
SSBP1-213ENST00000496622 TPRXLQ17RH7 258 aa3.32□□□□□ -1.88
SSBP1-213ENST00000496622 KRTAP2-2Q9BYT5 123 aa3.32□□□□□ -1.88
SSBP1-213ENST00000496622 TP53AIP1Q9HCN2 124 aa3.32□□□□□ -1.88
SSBP1-213ENST00000496622 LRP2P98164 4655 aa3.31□□□□□ -1.88
SSBP1-213ENST00000496622 MT1HL1P0DM35 61 aa3.31□□□□□ -1.88
SSBP1-213ENST00000496622 KRTAP13-3Q3SY46 172 aa3.31□□□□□ -1.88
SSBP1-213ENST00000496622 H0YAA0 97 aa3.29□□□□□ -1.88
SSBP1-213ENST00000496622 A0A1B0GU33 70 aa3.28□□□□□ -1.88
SSBP1-213ENST00000496622 NEBP20929 6669 aa3.28□□□□□ -1.88
SSBP1-213ENST00000496622 RPS29P62273 56 aaKnown RBP3.28□□□□□ -1.88
SSBP1-213ENST00000496622 FSIP2Q5CZC0 6907 aa3.26□□□□□ -1.89
SSBP1-213ENST00000496622 C10orf95Q9H7T3 257 aa3.24□□□□□ -1.89
SSBP1-213ENST00000496622 HMCN1Q96RW7 5635 aa3.19□□□□□ -1.9
SSBP1-213ENST00000496622 KRTAP6-3Q3LI67 103 aa3.17□□□□□ -1.9
SSBP1-213ENST00000496622 PRO2289Q9P1D8 64 aa3.17□□□□□ -1.9
SSBP1-213ENST00000496622 R4GN34 69 aa3.17□□□□□ -1.9
SSBP1-213ENST00000496622 RPL37P61927 97 aaKnown RBP3.15□□□□□ -1.91
SSBP1-213ENST00000496622 KRTAP10-6P60371 365 aaPredicted RBP3.14□□□□□ -1.91
SSBP1-213ENST00000496622 H1FX-AS1Q4G0G2 97 aa3.11□□□□□ -1.91
SSBP1-213ENST00000496622 SYNE2Q8WXH0 6885 aaKnown RBP3.08□□□□□ -1.92
SSBP1-213ENST00000496622 PLAC4Q8WY50 150 aa3.08□□□□□ -1.92
SSBP1-213ENST00000496622 KRTAP10-7P60409 375 aaPredicted RBP3.07□□□□□ -1.92
SSBP1-213ENST00000496622 KRTAP4-1Q9BYQ7 146 aa3.07□□□□□ -1.92
SSBP1-213ENST00000496622 COX6B2Q6YFQ2 88 aa3.06□□□□□ -1.92
SSBP1-213ENST00000496622 KRTAP2-3P0C7H8 128 aa3.06□□□□□ -1.92
SSBP1-213ENST00000496622 KRTAP2-4Q9BYR9 128 aa3.06□□□□□ -1.92
SSBP1-213ENST00000496622 MUC17Q685J3 4493 aa3.03□□□□□ -1.92
SSBP1-213ENST00000496622 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.02□□□□□ -1.93
SSBP1-213ENST00000496622 KRTAP5-11Q6L8G4 156 aa3.01□□□□□ -1.93
SSBP1-213ENST00000496622 MT3P25713 68 aa3□□□□□ -1.93
SSBP1-213ENST00000496622 LCE1FQ5T754 118 aa2.99□□□□□ -1.93
SSBP1-213ENST00000496622 S4R3F8 94 aa2.98□□□□□ -1.93
SSBP1-213ENST00000496622 USH2AO75445 5202 aa2.96□□□□□ -1.94
SSBP1-213ENST00000496622 A0A0D9SG42 100 aa2.94□□□□□ -1.94
SSBP1-213ENST00000496622 KRTAP19-2Q3LHN2 52 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms