RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 TRAV22A0A0B4J277 110 aa9.48□□□□□ -0.89
HDDC3-203ENST00000494993 LOC101927531A0A1B0GV80 90 aa9.48□□□□□ -0.89
HDDC3-203ENST00000494993 COL5A1-AS1Q5SY13 56 aa9.48□□□□□ -0.89
HDDC3-203ENST00000494993 H0YAA0 97 aa9.43□□□□□ -0.9
HDDC3-203ENST00000494993 NDUFC1O43677 76 aa9.4□□□□□ -0.9
HDDC3-203ENST00000494993 KRTAP2-3P0C7H8 128 aa9.38□□□□□ -0.91
HDDC3-203ENST00000494993 KRTAP2-4Q9BYR9 128 aa9.38□□□□□ -0.91
HDDC3-203ENST00000494993 ETDBQ3ZM63 59 aa9.36□□□□□ -0.91
HDDC3-203ENST00000494993 GTF2H5Q6ZYL4 71 aa9.34□□□□□ -0.91
HDDC3-203ENST00000494993 SPRR2FQ96RM1 72 aa9.34□□□□□ -0.91
HDDC3-203ENST00000494993 F8W1H4 67 aa9.33□□□□□ -0.92
HDDC3-203ENST00000494993 A8MUN3 132 aa9.32□□□□□ -0.92
HDDC3-203ENST00000494993 PRO2289Q9P1D8 64 aa9.32□□□□□ -0.92
HDDC3-203ENST00000494993 ADM2Q7Z4H4 148 aa9.31□□□□□ -0.92
HDDC3-203ENST00000494993 SPRR2EP22531 72 aa9.29□□□□□ -0.92
HDDC3-203ENST00000494993 SPRR2BP35325 72 aa9.29□□□□□ -0.92
HDDC3-203ENST00000494993 SPRR2AP35326 72 aa9.29□□□□□ -0.92
HDDC3-203ENST00000494993 MT1XP80297 61 aa9.29□□□□□ -0.92
HDDC3-203ENST00000494993 H0Y9P7 68 aa9.28□□□□□ -0.92
HDDC3-203ENST00000494993 ATOX1O00244 68 aa9.27□□□□□ -0.93
HDDC3-203ENST00000494993 UQCRQO14949 82 aa9.27□□□□□ -0.93
HDDC3-203ENST00000494993 ACYP1P07311 99 aa9.26□□□□□ -0.93
HDDC3-203ENST00000494993 PLAC4Q8WY50 150 aa9.21□□□□□ -0.94
HDDC3-203ENST00000494993 HIST1H4AP62805 103 aaKnown RBP9.19□□□□□ -0.94
HDDC3-203ENST00000494993 ATP5EP2Q5VTU8 51 aa9.19□□□□□ -0.94
HDDC3-203ENST00000494993 KRTAP8-1Q8IUC2 63 aa9.19□□□□□ -0.94
HDDC3-203ENST00000494993 KRTAP12-2P59991 146 aa9.14□□□□□ -0.95
HDDC3-203ENST00000494993 LCE1AQ5T7P2 110 aa9.12□□□□□ -0.95
HDDC3-203ENST00000494993 R4GN34 69 aa9.11□□□□□ -0.95
HDDC3-203ENST00000494993 FAM240AA0A1B0GVK7 77 aa9.1□□□□□ -0.95
HDDC3-203ENST00000494993 LINC00208Q96KT6 92 aa9.09□□□□□ -0.95
HDDC3-203ENST00000494993 P0C880 135 aa9.06□□□□□ -0.96
HDDC3-203ENST00000494993 KRTAP2-2Q9BYT5 123 aa9.06□□□□□ -0.96
HDDC3-203ENST00000494993 KRTAP2-1Q9BYU5 128 aa9.06□□□□□ -0.96
HDDC3-203ENST00000494993 C20orf197Q8N268 126 aa9.03□□□□□ -0.96
HDDC3-203ENST00000494993 M0QZ58 72 aa9.02□□□□□ -0.97
HDDC3-203ENST00000494993 KRTAP4-8A0A0G2JLE6 195 aa8.99□□□□□ -0.97
HDDC3-203ENST00000494993 KRTAP4-8Q9BYQ9 185 aa8.99□□□□□ -0.97
HDDC3-203ENST00000494993 SPRR2DP22532 72 aa8.98□□□□□ -0.97
HDDC3-203ENST00000494993 MP68P56378 58 aa8.98□□□□□ -0.97
HDDC3-203ENST00000494993 OCR1Q9BZK8 76 aa8.95□□□□□ -0.98
HDDC3-203ENST00000494993 PCP4L1A6NKN8 68 aa8.94□□□□□ -0.98
HDDC3-203ENST00000494993 LINC00643Q86TS7 51 aa8.93□□□□□ -0.98
HDDC3-203ENST00000494993 LINC01554Q52M75 96 aa8.91□□□□□ -0.98
HDDC3-203ENST00000494993 KRTAP3-2Q9BYR7 98 aa8.91□□□□□ -0.98
HDDC3-203ENST00000494993 DMAC1Q96GE9 116 aa8.87□□□□□ -0.99
HDDC3-203ENST00000494993 KRTAP10-7P60409 375 aaPredicted RBP8.86□□□□□ -0.99
HDDC3-203ENST00000494993 KRTAP10-12P60413 245 aa8.82□□□□□ -1
HDDC3-203ENST00000494993 H3BPC8 53 aa8.81□□□□□ -1
HDDC3-203ENST00000494993 LCE3BQ5TA77 95 aa8.77□□□□□ -1.01
HDDC3-203ENST00000494993 TRAV7A0A075B6U4 112 aa8.66□□□□□ -1.02
HDDC3-203ENST00000494993 MT-ATP8P03928 68 aa8.66□□□□□ -1.02
HDDC3-203ENST00000494993 SCGB1A1P11684 91 aa8.6□□□□□ -1.03
HDDC3-203ENST00000494993 ACYP2P14621 99 aa8.58□□□□□ -1.04
HDDC3-203ENST00000494993 SPTSSBQ8NFR3 76 aa8.54□□□□□ -1.04
HDDC3-203ENST00000494993 A0A1B0GV90 55 aa8.43□□□□□ -1.06
HDDC3-203ENST00000494993 J3QR89 54 aa8.43□□□□□ -1.06
HDDC3-203ENST00000494993 DSTQ03001 7570 aaKnown RBP8.43□□□□□ -1.06
HDDC3-203ENST00000494993 CHKB-CPT1BH3BT56 60 aa8.41□□□□□ -1.06
HDDC3-203ENST00000494993 GPR98Q8WXG9 6306 aa8.38□□□□□ -1.07
HDDC3-203ENST00000494993 KRTAP13-4Q3LI77 160 aa8.33□□□□□ -1.08
HDDC3-203ENST00000494993 LCE5AQ5TCM9 118 aa8.33□□□□□ -1.08
HDDC3-203ENST00000494993 CAMK2N1Q7Z7J9 78 aa8.32□□□□□ -1.08
HDDC3-203ENST00000494993 KRTAP19-7Q3SYF9 63 aa8.31□□□□□ -1.08
HDDC3-203ENST00000494993 SMIM20Q8N5G0 67 aa8.28□□□□□ -1.08
HDDC3-203ENST00000494993 MT1EP04732 61 aa8.26□□□□□ -1.09
HDDC3-203ENST00000494993 KRTAP19-3Q7Z4W3 81 aa8.26□□□□□ -1.09
HDDC3-203ENST00000494993 KRTAP4-9Q9BYQ8 210 aa8.24□□□□□ -1.09
HDDC3-203ENST00000494993 SNURFQ9Y675 71 aa8.18□□□□□ -1.1
HDDC3-203ENST00000494993 SPANXA2-OT1Q8N9U9 137 aa8.13□□□□□ -1.11
HDDC3-203ENST00000494993 CYSTM1Q9H1C7 97 aa8.08□□□□□ -1.12
HDDC3-203ENST00000494993 A0A0D9SG42 100 aa8.04□□□□□ -1.12
HDDC3-203ENST00000494993 MT1GP13640 62 aa8.02□□□□□ -1.13
HDDC3-203ENST00000494993 LCE1DQ5T752 114 aa8.02□□□□□ -1.13
HDDC3-203ENST00000494993 KRTAP19-5Q3LI72 72 aa8.01□□□□□ -1.13
HDDC3-203ENST00000494993 PP632Q6XCG6 107 aa7.95□□□□□ -1.14
HDDC3-203ENST00000494993 K7ERU9 68 aa7.93□□□□□ -1.14
HDDC3-203ENST00000494993 SPATA8Q6RVD6 105 aa7.93□□□□□ -1.14
HDDC3-203ENST00000494993 SPINT4Q6UDR6 99 aa7.93□□□□□ -1.14
HDDC3-203ENST00000494993 COA5Q86WW8 74 aa7.93□□□□□ -1.14
HDDC3-203ENST00000494993 SERP1Q9Y6X1 66 aa7.93□□□□□ -1.14
HDDC3-203ENST00000494993 SEC61GP60059 68 aa7.92□□□□□ -1.14
HDDC3-203ENST00000494993 LCE4AQ5TA78 99 aa7.92□□□□□ -1.14
HDDC3-203ENST00000494993 HMCN1Q96RW7 5635 aa7.92□□□□□ -1.14
HDDC3-203ENST00000494993 MT1MQ8N339 61 aa7.89□□□□□ -1.15
HDDC3-203ENST00000494993 MT4P47944 62 aa7.88□□□□□ -1.15
HDDC3-203ENST00000494993 SERP2Q8N6R1 65 aa7.88□□□□□ -1.15
HDDC3-203ENST00000494993 KRTAP12-1P59990 96 aa7.85□□□□□ -1.15
HDDC3-203ENST00000494993 A0A1B0GU33 70 aa7.83□□□□□ -1.16
HDDC3-203ENST00000494993 MT1LQ93083 61 aa7.83□□□□□ -1.16
HDDC3-203ENST00000494993 AHNAK2Q8IVF2 5795 aa7.8□□□□□ -1.16
HDDC3-203ENST00000494993 KRTAP5-4Q6L8H1 288 aa7.72□□□□□ -1.17
HDDC3-203ENST00000494993 KRTAP4-3Q9BYR4 195 aa7.71□□□□□ -1.18
HDDC3-203ENST00000494993 C10orf95Q9H7T3 257 aa7.67□□□□□ -1.18
HDDC3-203ENST00000494993 LCE3AQ5TA76 89 aa7.66□□□□□ -1.18
HDDC3-203ENST00000494993 SMIM26A0A096LP01 95 aa7.62□□□□□ -1.19
HDDC3-203ENST00000494993 KRTAP5-10Q6L8G5 202 aa7.62□□□□□ -1.19
HDDC3-203ENST00000494993 KRTAP4-6Q9BYQ5 205 aa7.62□□□□□ -1.19
HDDC3-203ENST00000494993 TNP1P09430 55 aa7.58□□□□□ -1.2
HDDC3-203ENST00000494993 A8MU10 97 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms