RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 LINC01554Q52M75 96 aa8.83□□□□□ -1
CCDC88B-210ENST00000494566 RYR1P21817 5038 aa8.82□□□□□ -1
CCDC88B-210ENST00000494566 Q5VSD8 79 aa8.8□□□□□ -1
CCDC88B-210ENST00000494566 KRTAP17-1Q9BYP8 105 aa8.8□□□□□ -1
CCDC88B-210ENST00000494566 A0A1B0GU33 70 aa8.75□□□□□ -1.01
CCDC88B-210ENST00000494566 H3BS24 57 aa8.75□□□□□ -1.01
CCDC88B-210ENST00000494566 EPPK1P58107 5090 aaKnown RBP8.7□□□□□ -1.02
CCDC88B-210ENST00000494566 KRTAP10-8P60410 259 aa8.7□□□□□ -1.02
CCDC88B-210ENST00000494566 A0A0D9SG42 100 aa8.67□□□□□ -1.02
CCDC88B-210ENST00000494566 H1FX-AS1Q4G0G2 97 aa8.66□□□□□ -1.02
CCDC88B-210ENST00000494566 LPAP08519 4548 aa8.65□□□□□ -1.03
CCDC88B-210ENST00000494566 COX6B2Q6YFQ2 88 aa8.6□□□□□ -1.03
CCDC88B-210ENST00000494566 LRP2P98164 4655 aa8.57□□□□□ -1.04
CCDC88B-210ENST00000494566 XP32Q5T750 250 aa8.56□□□□□ -1.04
CCDC88B-210ENST00000494566 RPL37P61927 97 aaKnown RBP8.53□□□□□ -1.04
CCDC88B-210ENST00000494566 ABCA13Q86UQ4 5058 aa8.52□□□□□ -1.05
CCDC88B-210ENST00000494566 MT1HL1P0DM35 61 aa8.51□□□□□ -1.05
CCDC88B-210ENST00000494566 KRTAP25-1Q3LHN0 102 aa8.49□□□□□ -1.05
CCDC88B-210ENST00000494566 KRTAP13-4Q3LI77 160 aa8.49□□□□□ -1.05
CCDC88B-210ENST00000494566 K7ERS5 55 aa8.43□□□□□ -1.06
CCDC88B-210ENST00000494566 KRTAP3-3Q9BYR6 98 aa8.41□□□□□ -1.06
CCDC88B-210ENST00000494566 P0C880 135 aa8.4□□□□□ -1.07
CCDC88B-210ENST00000494566 C10orf95Q9H7T3 257 aa8.39□□□□□ -1.07
CCDC88B-210ENST00000494566 KRTAP10-6P60371 365 aaPredicted RBP8.38□□□□□ -1.07
CCDC88B-210ENST00000494566 KRTAP4-5Q9BYR2 181 aa8.38□□□□□ -1.07
CCDC88B-210ENST00000494566 S4R3F8 94 aa8.33□□□□□ -1.08
CCDC88B-210ENST00000494566 ROMO1P60602 79 aa8.3□□□□□ -1.08
CCDC88B-210ENST00000494566 KRTAP3-2Q9BYR7 98 aa8.3□□□□□ -1.08
CCDC88B-210ENST00000494566 SPINT4Q6UDR6 99 aa8.29□□□□□ -1.08
CCDC88B-210ENST00000494566 TPRXLQ17RH7 258 aa8.24□□□□□ -1.09
CCDC88B-210ENST00000494566 KRTAP12-2P59991 146 aa8.21□□□□□ -1.1
CCDC88B-210ENST00000494566 HERC2O95714 4834 aa8.17□□□□□ -1.1
CCDC88B-210ENST00000494566 MUC17Q685J3 4493 aa8.08□□□□□ -1.12
CCDC88B-210ENST00000494566 MUC2Q02817 5179 aa8.05□□□□□ -1.12
CCDC88B-210ENST00000494566 KRTAP12-1P59990 96 aa8.02□□□□□ -1.13
CCDC88B-210ENST00000494566 J3QL48 77 aa8□□□□□ -1.13
CCDC88B-210ENST00000494566 KRTAP4-1Q9BYQ7 146 aa7.98□□□□□ -1.13
CCDC88B-210ENST00000494566 M0QZ58 72 aa7.92□□□□□ -1.14
CCDC88B-210ENST00000494566 NDUFAF8A1L188 74 aa7.91□□□□□ -1.14
CCDC88B-210ENST00000494566 HERC1Q15751 4861 aa7.91□□□□□ -1.14
CCDC88B-210ENST00000494566 SEC61BP60468 96 aaKnown RBP7.89□□□□□ -1.15
CCDC88B-210ENST00000494566 BIRC6Q9NR09 4857 aa7.86□□□□□ -1.15
CCDC88B-210ENST00000494566 LORP23490 312 aaPredicted RBP7.85□□□□□ -1.15
CCDC88B-210ENST00000494566 R4GN34 69 aa7.84□□□□□ -1.15
CCDC88B-210ENST00000494566 PCLOQ9Y6V0 5065 aa7.8□□□□□ -1.16
CCDC88B-210ENST00000494566 KRTAP15-1Q3LI76 137 aa7.75□□□□□ -1.17
CCDC88B-210ENST00000494566 KRTAP19-2Q3LHN2 52 aa7.71□□□□□ -1.18
CCDC88B-210ENST00000494566 FAT4Q6V0I7 4981 aa7.67□□□□□ -1.18
CCDC88B-210ENST00000494566 HMCN2Q8NDA2 5059 aa7.67□□□□□ -1.18
CCDC88B-210ENST00000494566 FLGP20930 4061 aaPredicted RBP7.62□□□□□ -1.19
CCDC88B-210ENST00000494566 RNF213Q63HN8 5207 aa7.55□□□□□ -1.2
CCDC88B-210ENST00000494566 CAMK2N1Q7Z7J9 78 aa7.53□□□□□ -1.2
CCDC88B-210ENST00000494566 UBR4Q5T4S7 5183 aa7.45□□□□□ -1.22
CCDC88B-210ENST00000494566 A0A0A0MQY5 61 aa7.45□□□□□ -1.22
CCDC88B-210ENST00000494566 PLAC4Q8WY50 150 aa7.45□□□□□ -1.22
CCDC88B-210ENST00000494566 LCE2CQ5TA81 110 aa7.32□□□□□ -1.24
CCDC88B-210ENST00000494566 M0R2T5 61 aa7.24□□□□□ -1.25
CCDC88B-210ENST00000494566 MT1HP80294 61 aa7.14□□□□□ -1.27
CCDC88B-210ENST00000494566 LUZP6Q538Z0 58 aa7.14□□□□□ -1.27
CCDC88B-210ENST00000494566 KRTAP19-1Q8IUB9 90 aa7.08□□□□□ -1.28
CCDC88B-210ENST00000494566 TNP1P09430 55 aa7.07□□□□□ -1.28
CCDC88B-210ENST00000494566 MT1FP04733 61 aa7.03□□□□□ -1.28
CCDC88B-210ENST00000494566 KRTAP10-10P60014 251 aa7.02□□□□□ -1.29
CCDC88B-210ENST00000494566 PP632Q6XCG6 107 aa7.02□□□□□ -1.29
CCDC88B-210ENST00000494566 SPRR2GQ9BYE4 73 aa7.01□□□□□ -1.29
CCDC88B-210ENST00000494566 MT2AP02795 61 aa7□□□□□ -1.29
CCDC88B-210ENST00000494566 KRTAP9-8Q9BYQ0 159 aa6.95□□□□□ -1.3
CCDC88B-210ENST00000494566 LCE3AQ5TA76 89 aa6.83□□□□□ -1.32
CCDC88B-210ENST00000494566 MT1BP07438 61 aa6.73□□□□□ -1.33
CCDC88B-210ENST00000494566 USH2AO75445 5202 aa6.7□□□□□ -1.34
CCDC88B-210ENST00000494566 KRTAP19-8Q3LI54 63 aa6.7□□□□□ -1.34
CCDC88B-210ENST00000494566 KRTAP23-1A1A580 65 aa6.66□□□□□ -1.34
CCDC88B-210ENST00000494566 KMT2DO14686 5537 aa6.66□□□□□ -1.34
CCDC88B-210ENST00000494566 KRTAP10-5P60370 271 aa6.66□□□□□ -1.34
CCDC88B-210ENST00000494566 MT1XP80297 61 aa6.65□□□□□ -1.34
CCDC88B-210ENST00000494566 KRTAP9-3Q9BYQ3 159 aa6.64□□□□□ -1.35
CCDC88B-210ENST00000494566 SPRR5A0A1B0GTR4 108 aa6.6□□□□□ -1.35
CCDC88B-210ENST00000494566 KRTAP10-7P60409 375 aaPredicted RBP6.53□□□□□ -1.36
CCDC88B-210ENST00000494566 LCE2BO14633 110 aa6.47□□□□□ -1.37
CCDC88B-210ENST00000494566 KRTAP10-12P60413 245 aa6.46□□□□□ -1.37
CCDC88B-210ENST00000494566 KRTAP8-1Q8IUC2 63 aa6.43□□□□□ -1.38
CCDC88B-210ENST00000494566 KRTAP12-3P60328 96 aa6.4□□□□□ -1.38
CCDC88B-210ENST00000494566 LCE2AQ5TA79 106 aaPredicted RBP6.35□□□□□ -1.39
CCDC88B-210ENST00000494566 PRO2289Q9P1D8 64 aa6.32□□□□□ -1.4
CCDC88B-210ENST00000494566 FSIP2Q5CZC0 6907 aa6.26□□□□□ -1.41
CCDC88B-210ENST00000494566 KRTAP4-8A0A0G2JLE6 195 aa6.22□□□□□ -1.41
CCDC88B-210ENST00000494566 KRTAP4-8Q9BYQ9 185 aa6.22□□□□□ -1.41
CCDC88B-210ENST00000494566 KRTAP19-5Q3LI72 72 aa6.2□□□□□ -1.42
CCDC88B-210ENST00000494566 SSPOA2VEC9 5147 aa6.11□□□□□ -1.43
CCDC88B-210ENST00000494566 KRTAP4-7Q9BYR0 210 aa6.05□□□□□ -1.44
CCDC88B-210ENST00000494566 LCE3CQ5T5A8 94 aa5.97□□□□□ -1.45
CCDC88B-210ENST00000494566 KRTAP9-6A8MVA2 160 aa5.95□□□□□ -1.46
CCDC88B-210ENST00000494566 INE1O15225 51 aa5.94□□□□□ -1.46
CCDC88B-210ENST00000494566 KRTAP19-7Q3SYF9 63 aa5.93□□□□□ -1.46
CCDC88B-210ENST00000494566 DSTQ03001 7570 aaKnown RBP5.84□□□□□ -1.47
CCDC88B-210ENST00000494566 FCGBPQ9Y6R7 5405 aaPredicted RBP5.8□□□□□ -1.48
CCDC88B-210ENST00000494566 MUC12Q9UKN1 5478 aa5.78□□□□□ -1.48
CCDC88B-210ENST00000494566 MT1EP04732 61 aa5.75□□□□□ -1.49
CCDC88B-210ENST00000494566 MT1LQ93083 61 aa5.73□□□□□ -1.49
CCDC88B-210ENST00000494566 KRTAP19-6Q3LI70 58 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms