RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 Q6ZQT0 140 aa4.94□□□□□ -1.62
HDAC3-212ENST00000492407 A0A1W2PNM2 257 aa4.93□□□□□ -1.62
HDAC3-212ENST00000492407 C8orf17Q9NRJ1 99 aa4.93□□□□□ -1.62
HDAC3-212ENST00000492407 IGLV5-48A0A075B6I7 105 aa4.92□□□□□ -1.62
HDAC3-212ENST00000492407 C9orf92A6NGG3 77 aa4.91□□□□□ -1.62
HDAC3-212ENST00000492407 LUZP6Q538Z0 58 aa4.9□□□□□ -1.63
HDAC3-212ENST00000492407 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.9□□□□□ -1.63
HDAC3-212ENST00000492407 ADM2Q7Z4H4 148 aa4.9□□□□□ -1.63
HDAC3-212ENST00000492407 SMIM29Q86T20 159 aa4.9□□□□□ -1.63
HDAC3-212ENST00000492407 RPL37P61927 97 aaKnown RBP4.89□□□□□ -1.63
HDAC3-212ENST00000492407 CSAG1Q6PB30 78 aa4.89□□□□□ -1.63
HDAC3-212ENST00000492407 DEFB105AQ8NG35 78 aa4.89□□□□□ -1.63
HDAC3-212ENST00000492407 A8MWP4 228 aa4.88□□□□□ -1.63
HDAC3-212ENST00000492407 KRTAP10-6P60371 365 aaPredicted RBP4.88□□□□□ -1.63
HDAC3-212ENST00000492407 CAMK2N1Q7Z7J9 78 aa4.85□□□□□ -1.63
HDAC3-212ENST00000492407 H0Y9P7 68 aa4.84□□□□□ -1.63
HDAC3-212ENST00000492407 M0R2T5 61 aa4.84□□□□□ -1.63
HDAC3-212ENST00000492407 IGKV4-1P06312 121 aa4.84□□□□□ -1.63
HDAC3-212ENST00000492407 COX6B2Q6YFQ2 88 aa4.84□□□□□ -1.63
HDAC3-212ENST00000492407 SPATA8Q6RVD6 105 aa4.83□□□□□ -1.64
HDAC3-212ENST00000492407 C20orf166-AS1Q96NR2 134 aa4.83□□□□□ -1.64
HDAC3-212ENST00000492407 P0C880 135 aa4.81□□□□□ -1.64
HDAC3-212ENST00000492407 SPINK7P58062 85 aa4.81□□□□□ -1.64
HDAC3-212ENST00000492407 KRTAP25-1Q3LHN0 102 aa4.81□□□□□ -1.64
HDAC3-212ENST00000492407 SMIM11BQ8TCY0 68 aa4.81□□□□□ -1.64
HDAC3-212ENST00000492407 DMAC1Q96GE9 116 aa4.81□□□□□ -1.64
HDAC3-212ENST00000492407 A0A0G2JQZ4 141 aa4.79□□□□□ -1.64
HDAC3-212ENST00000492407 LINC00575Q6W349 94 aa4.79□□□□□ -1.64
HDAC3-212ENST00000492407 FLGP20930 4061 aaPredicted RBP4.78□□□□□ -1.64
HDAC3-212ENST00000492407 UQCR11O14957 56 aa4.77□□□□□ -1.65
HDAC3-212ENST00000492407 COA5Q86WW8 74 aa4.77□□□□□ -1.65
HDAC3-212ENST00000492407 IGFL1Q6UW32 110 aa4.76□□□□□ -1.65
HDAC3-212ENST00000492407 Q6ZQY7 126 aa4.76□□□□□ -1.65
HDAC3-212ENST00000492407 A0A1B0GVX0 72 aa4.73□□□□□ -1.65
HDAC3-212ENST00000492407 Q96NJ1 140 aa4.7□□□□□ -1.66
HDAC3-212ENST00000492407 KRTAP23-1A1A580 65 aa4.69□□□□□ -1.66
HDAC3-212ENST00000492407 A8MUU9 505 aa4.69□□□□□ -1.66
HDAC3-212ENST00000492407 Q5W150 140 aa4.67□□□□□ -1.66
HDAC3-212ENST00000492407 KRTAP9-8Q9BYQ0 159 aa4.67□□□□□ -1.66
HDAC3-212ENST00000492407 USH2AO75445 5202 aa4.67□□□□□ -1.66
HDAC3-212ENST00000492407 SSPOA2VEC9 5147 aa4.65□□□□□ -1.66
HDAC3-212ENST00000492407 NDUFAF8A1L188 74 aa4.65□□□□□ -1.67
HDAC3-212ENST00000492407 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.63□□□□□ -1.67
HDAC3-212ENST00000492407 KRTAP9-7A8MTY7 169 aa4.61□□□□□ -1.67
HDAC3-212ENST00000492407 KRTAP4-8Q9BYQ9 185 aa4.6□□□□□ -1.67
HDAC3-212ENST00000492407 DSCR10P59022 87 aa4.58□□□□□ -1.68
HDAC3-212ENST00000492407 KRTAP15-1Q3LI76 137 aa4.58□□□□□ -1.68
HDAC3-212ENST00000492407 MT2AP02795 61 aa4.57□□□□□ -1.68
HDAC3-212ENST00000492407 FCGBPQ9Y6R7 5405 aaPredicted RBP4.57□□□□□ -1.68
HDAC3-212ENST00000492407 Q8N9L7 120 aa4.56□□□□□ -1.68
HDAC3-212ENST00000492407 HRES1P13985 223 aa4.55□□□□□ -1.68
HDAC3-212ENST00000492407 LINC00472Q9H8W2 130 aa4.55□□□□□ -1.68
HDAC3-212ENST00000492407 A0A1B0GU69 56 aa4.53□□□□□ -1.68
HDAC3-212ENST00000492407 KRTAP9-3Q9BYQ3 159 aa4.53□□□□□ -1.68
HDAC3-212ENST00000492407 MT1FP04733 61 aa4.52□□□□□ -1.69
HDAC3-212ENST00000492407 KRTAP10-10P60014 251 aa4.51□□□□□ -1.69
HDAC3-212ENST00000492407 A0A1B0GU33 70 aa4.5□□□□□ -1.69
HDAC3-212ENST00000492407 KRTAP19-1Q8IUB9 90 aa4.5□□□□□ -1.69
HDAC3-212ENST00000492407 SPINT4Q6UDR6 99 aa4.49□□□□□ -1.69
HDAC3-212ENST00000492407 TP53AIP1Q9HCN2 124 aa4.47□□□□□ -1.69
HDAC3-212ENST00000492407 DEFB116Q30KQ4 102 aa4.46□□□□□ -1.7
HDAC3-212ENST00000492407 ACYP2P14621 99 aa4.44□□□□□ -1.7
HDAC3-212ENST00000492407 MACF1Q9UPN3 7388 aaKnown RBP4.44□□□□□ -1.7
HDAC3-212ENST00000492407 KRTAP19-6Q3LI70 58 aa4.43□□□□□ -1.7
HDAC3-212ENST00000492407 SYNE2Q8WXH0 6885 aaKnown RBP4.42□□□□□ -1.7
HDAC3-212ENST00000492407 K7EQZ3 153 aa4.41□□□□□ -1.7
HDAC3-212ENST00000492407 LCE3BQ5TA77 95 aa4.4□□□□□ -1.71
HDAC3-212ENST00000492407 KRTAP4-12Q9BQ66 201 aa4.38□□□□□ -1.71
HDAC3-212ENST00000492407 WFDC13Q8IUB5 93 aa4.36□□□□□ -1.71
HDAC3-212ENST00000492407 H1FX-AS1Q4G0G2 97 aa4.33□□□□□ -1.72
HDAC3-212ENST00000492407 PRO2289Q9P1D8 64 aa4.33□□□□□ -1.72
HDAC3-212ENST00000492407 KRTAP6-3Q3LI67 103 aa4.32□□□□□ -1.72
HDAC3-212ENST00000492407 MRPL34Q9BQ48 92 aaKnown RBP4.3□□□□□ -1.72
HDAC3-212ENST00000492407 KRTAP9-9Q9BYP9 154 aa4.29□□□□□ -1.72
HDAC3-212ENST00000492407 KRTAP9-4Q9BYQ2 154 aa4.29□□□□□ -1.72
HDAC3-212ENST00000492407 MMP24-AS1A0A0U1RRL7 71 aa4.27□□□□□ -1.73
HDAC3-212ENST00000492407 KRTAP4-8A0A0G2JLE6 195 aa4.23□□□□□ -1.73
HDAC3-212ENST00000492407 IGKV2D-30A0A075B6S6 120 aa4.2□□□□□ -1.74
HDAC3-212ENST00000492407 IGKV2-30P06310 120 aa4.2□□□□□ -1.74
HDAC3-212ENST00000492407 NEBP20929 6669 aa4.19□□□□□ -1.74
HDAC3-212ENST00000492407 R4GN34 69 aa4.15□□□□□ -1.75
HDAC3-212ENST00000492407 KRTAP19-8Q3LI54 63 aa4.13□□□□□ -1.75
HDAC3-212ENST00000492407 SPRR2GQ9BYE4 73 aa4.13□□□□□ -1.75
HDAC3-212ENST00000492407 MUC12Q9UKN1 5478 aa4.13□□□□□ -1.75
HDAC3-212ENST00000492407 MT1BP07438 61 aa4.12□□□□□ -1.75
HDAC3-212ENST00000492407 LCE1DQ5T752 114 aa4.11□□□□□ -1.75
HDAC3-212ENST00000492407 PLAC4Q8WY50 150 aa4.11□□□□□ -1.75
HDAC3-212ENST00000492407 CRIPTQ9P021 101 aa4.11□□□□□ -1.75
HDAC3-212ENST00000492407 S4R3F8 94 aa4.11□□□□□ -1.75
HDAC3-212ENST00000492407 H0YAA0 97 aa4.1□□□□□ -1.75
HDAC3-212ENST00000492407 INE1O15225 51 aa4.1□□□□□ -1.75
HDAC3-212ENST00000492407 KRTAP3-1Q9BYR8 98 aa4.1□□□□□ -1.75
HDAC3-212ENST00000492407 KRTAP10-5P60370 271 aa4.08□□□□□ -1.76
HDAC3-212ENST00000492407 KRTAP4-7Q9BYR0 210 aa4.08□□□□□ -1.76
HDAC3-212ENST00000492407 KRTAP5-9P26371 169 aa4.07□□□□□ -1.76
HDAC3-212ENST00000492407 KRTAP20-1Q3LI63 56 aa4.04□□□□□ -1.76
HDAC3-212ENST00000492407 MDN1Q9NU22 5596 aa4.04□□□□□ -1.76
HDAC3-212ENST00000492407 KMT2DO14686 5537 aa4.03□□□□□ -1.76
HDAC3-212ENST00000492407 KRTAP4-9Q9BYQ8 210 aa3.98□□□□□ -1.77
HDAC3-212ENST00000492407 KRTAP2-3P0C7H8 128 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms