RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 CYP4F30PQ9H0H9 118 aa6.02□□□□□ -1.45
COL6A3-211ENST00000491233 ETDBQ3ZM63 59 aa6.01□□□□□ -1.45
COL6A3-211ENST00000491233 A0A087WVE0 104 aa6□□□□□ -1.45
COL6A3-211ENST00000491233 PCP4L1A6NKN8 68 aa5.99□□□□□ -1.45
COL6A3-211ENST00000491233 TRAV22A0A0B4J277 110 aa5.98□□□□□ -1.45
COL6A3-211ENST00000491233 MUC12Q9UKN1 5478 aa5.98□□□□□ -1.45
COL6A3-211ENST00000491233 LOC101927531A0A1B0GV80 90 aa5.96□□□□□ -1.46
COL6A3-211ENST00000491233 CRIPTQ9P021 101 aa5.96□□□□□ -1.46
COL6A3-211ENST00000491233 IMUPQ9GZP8 106 aa5.94□□□□□ -1.46
COL6A3-211ENST00000491233 KRTAP5-9P26371 169 aa5.92□□□□□ -1.46
COL6A3-211ENST00000491233 KRTAP20-1Q3LI63 56 aa5.89□□□□□ -1.47
COL6A3-211ENST00000491233 NDUFC1O43677 76 aa5.88□□□□□ -1.47
COL6A3-211ENST00000491233 ACYP1P07311 99 aa5.88□□□□□ -1.47
COL6A3-211ENST00000491233 H0Y9P7 68 aa5.87□□□□□ -1.47
COL6A3-211ENST00000491233 H0YAA0 97 aa5.86□□□□□ -1.47
COL6A3-211ENST00000491233 UQCRQO14949 82 aa5.86□□□□□ -1.47
COL6A3-211ENST00000491233 ATP5EP2Q5VTU8 51 aa5.86□□□□□ -1.47
COL6A3-211ENST00000491233 ATOX1O00244 68 aa5.85□□□□□ -1.47
COL6A3-211ENST00000491233 HIST1H4AP62805 103 aaKnown RBP5.85□□□□□ -1.47
COL6A3-211ENST00000491233 LCE3BQ5TA77 95 aa5.85□□□□□ -1.47
COL6A3-211ENST00000491233 FAM240AA0A1B0GVK7 77 aa5.84□□□□□ -1.47
COL6A3-211ENST00000491233 KMT2DO14686 5537 aa5.82□□□□□ -1.48
COL6A3-211ENST00000491233 A8MUN3 132 aa5.81□□□□□ -1.48
COL6A3-211ENST00000491233 ADM2Q7Z4H4 148 aa5.81□□□□□ -1.48
COL6A3-211ENST00000491233 KRTAP9-9Q9BYP9 154 aa5.8□□□□□ -1.48
COL6A3-211ENST00000491233 KRTAP9-4Q9BYQ2 154 aa5.8□□□□□ -1.48
COL6A3-211ENST00000491233 MDN1Q9NU22 5596 aa5.77□□□□□ -1.49
COL6A3-211ENST00000491233 LINC00208Q96KT6 92 aa5.76□□□□□ -1.49
COL6A3-211ENST00000491233 MT1XP80297 61 aa5.75□□□□□ -1.49
COL6A3-211ENST00000491233 PRO2289Q9P1D8 64 aa5.75□□□□□ -1.49
COL6A3-211ENST00000491233 LINC00643Q86TS7 51 aa5.73□□□□□ -1.49
COL6A3-211ENST00000491233 SPRR2FQ96RM1 72 aa5.73□□□□□ -1.49
COL6A3-211ENST00000491233 MP68P56378 58 aa5.7□□□□□ -1.5
COL6A3-211ENST00000491233 PLAC4Q8WY50 150 aa5.7□□□□□ -1.5
COL6A3-211ENST00000491233 SPRR2EP22531 72 aa5.68□□□□□ -1.5
COL6A3-211ENST00000491233 SPRR2BP35325 72 aa5.68□□□□□ -1.5
COL6A3-211ENST00000491233 SPRR2AP35326 72 aa5.68□□□□□ -1.5
COL6A3-211ENST00000491233 OCR1Q9BZK8 76 aa5.68□□□□□ -1.5
COL6A3-211ENST00000491233 KRTAP2-3P0C7H8 128 aa5.67□□□□□ -1.5
COL6A3-211ENST00000491233 P0C880 135 aa5.67□□□□□ -1.5
COL6A3-211ENST00000491233 KRTAP2-4Q9BYR9 128 aa5.67□□□□□ -1.5
COL6A3-211ENST00000491233 R4GN34 69 aa5.67□□□□□ -1.5
COL6A3-211ENST00000491233 A0A1B0GV90 55 aa5.66□□□□□ -1.5
COL6A3-211ENST00000491233 KRTAP8-1Q8IUC2 63 aa5.65□□□□□ -1.5
COL6A3-211ENST00000491233 M0QZ58 72 aa5.64□□□□□ -1.51
COL6A3-211ENST00000491233 KRTAP19-4Q3LI73 84 aa5.64□□□□□ -1.51
COL6A3-211ENST00000491233 C20orf197Q8N268 126 aa5.64□□□□□ -1.51
COL6A3-211ENST00000491233 KRTAP4-8A0A0G2JLE6 195 aa5.63□□□□□ -1.51
COL6A3-211ENST00000491233 KRTAP12-2P59991 146 aa5.63□□□□□ -1.51
COL6A3-211ENST00000491233 DMAC1Q96GE9 116 aa5.6□□□□□ -1.51
COL6A3-211ENST00000491233 LCE4AQ5TA78 99 aa5.59□□□□□ -1.51
COL6A3-211ENST00000491233 H3BPC8 53 aa5.58□□□□□ -1.52
COL6A3-211ENST00000491233 LCE1AQ5T7P2 110 aa5.58□□□□□ -1.52
COL6A3-211ENST00000491233 LINC01554Q52M75 96 aa5.57□□□□□ -1.52
COL6A3-211ENST00000491233 J3QR89 54 aa5.55□□□□□ -1.52
COL6A3-211ENST00000491233 SCGB1A1P11684 91 aa5.52□□□□□ -1.53
COL6A3-211ENST00000491233 LCE1DQ5T752 114 aa5.5□□□□□ -1.53
COL6A3-211ENST00000491233 SPRR2DP22532 72 aa5.49□□□□□ -1.53
COL6A3-211ENST00000491233 KRTAP10-7P60409 375 aaPredicted RBP5.48□□□□□ -1.53
COL6A3-211ENST00000491233 KRTAP2-2Q9BYT5 123 aa5.48□□□□□ -1.53
COL6A3-211ENST00000491233 KRTAP2-1Q9BYU5 128 aa5.48□□□□□ -1.53
COL6A3-211ENST00000491233 TRAV7A0A075B6U4 112 aa5.46□□□□□ -1.54
COL6A3-211ENST00000491233 KRTAP10-12P60413 245 aa5.44□□□□□ -1.54
COL6A3-211ENST00000491233 MT-ATP8P03928 68 aa5.42□□□□□ -1.54
COL6A3-211ENST00000491233 KRTAP4-7Q9BYR0 210 aa5.42□□□□□ -1.54
COL6A3-211ENST00000491233 ACYP2P14621 99 aa5.41□□□□□ -1.54
COL6A3-211ENST00000491233 SPTSSBQ8NFR3 76 aa5.38□□□□□ -1.55
COL6A3-211ENST00000491233 CHKB-CPT1BH3BT56 60 aa5.34□□□□□ -1.55
COL6A3-211ENST00000491233 SMIM20Q8N5G0 67 aa5.34□□□□□ -1.55
COL6A3-211ENST00000491233 KRTAP4-9Q9BYQ8 210 aa5.34□□□□□ -1.55
COL6A3-211ENST00000491233 K7ERU9 68 aa5.31□□□□□ -1.56
COL6A3-211ENST00000491233 SNURFQ9Y675 71 aa5.25□□□□□ -1.57
COL6A3-211ENST00000491233 KRTAP13-4Q3LI77 160 aa5.24□□□□□ -1.57
COL6A3-211ENST00000491233 LCE5AQ5TCM9 118 aa5.21□□□□□ -1.58
COL6A3-211ENST00000491233 KRTAP4-2Q9BYR5 136 aa5.21□□□□□ -1.58
COL6A3-211ENST00000491233 CAMK2N1Q7Z7J9 78 aa5.2□□□□□ -1.58
COL6A3-211ENST00000491233 SPANXA2-OT1Q8N9U9 137 aa5.18□□□□□ -1.58
COL6A3-211ENST00000491233 KRTAP4-11Q9BYQ6 195 aa5.18□□□□□ -1.58
COL6A3-211ENST00000491233 SERP2Q8N6R1 65 aa5.15□□□□□ -1.59
COL6A3-211ENST00000491233 KRTAP19-7Q3SYF9 63 aa5.14□□□□□ -1.59
COL6A3-211ENST00000491233 MT1EP04732 61 aa5.1□□□□□ -1.59
COL6A3-211ENST00000491233 KRTAP19-3Q7Z4W3 81 aa5.09□□□□□ -1.59
COL6A3-211ENST00000491233 DSTQ03001 7570 aaKnown RBP5.08□□□□□ -1.6
COL6A3-211ENST00000491233 COA5Q86WW8 74 aa5.07□□□□□ -1.6
COL6A3-211ENST00000491233 A0A0D9SG42 100 aa5.06□□□□□ -1.6
COL6A3-211ENST00000491233 GPR98Q8WXG9 6306 aa5.05□□□□□ -1.6
COL6A3-211ENST00000491233 SEC61GP60059 68 aa5.01□□□□□ -1.61
COL6A3-211ENST00000491233 SPATA8Q6RVD6 105 aa5.01□□□□□ -1.61
COL6A3-211ENST00000491233 SERP1Q9Y6X1 66 aa5.01□□□□□ -1.61
COL6A3-211ENST00000491233 SPINT4Q6UDR6 99 aa5□□□□□ -1.61
COL6A3-211ENST00000491233 CYSTM1Q9H1C7 97 aa4.98□□□□□ -1.61
COL6A3-211ENST00000491233 COX7CP15954 63 aa4.97□□□□□ -1.61
COL6A3-211ENST00000491233 KRTAP19-5Q3LI72 72 aa4.97□□□□□ -1.61
COL6A3-211ENST00000491233 KRTAP12-1P59990 96 aa4.95□□□□□ -1.62
COL6A3-211ENST00000491233 A0A1B0GU33 70 aa4.94□□□□□ -1.62
COL6A3-211ENST00000491233 KRTAP23-1A1A580 65 aa4.93□□□□□ -1.62
COL6A3-211ENST00000491233 MT1GP13640 62 aa4.93□□□□□ -1.62
COL6A3-211ENST00000491233 H7BZZ5 65 aa4.91□□□□□ -1.62
COL6A3-211ENST00000491233 PP632Q6XCG6 107 aa4.9□□□□□ -1.63
COL6A3-211ENST00000491233 MT1MQ8N339 61 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms