RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 FAM240AA0A1B0GVK7 77 aa10.25□□□□□ -0.77
COL9A3-213ENST00000489045 HIST1H4AP62805 103 aaKnown RBP10.23□□□□□ -0.77
COL9A3-213ENST00000489045 UQCRQO14949 82 aa10.19□□□□□ -0.78
COL9A3-213ENST00000489045 H0Y9P7 68 aa10.18□□□□□ -0.78
COL9A3-213ENST00000489045 ATOX1O00244 68 aa10.15□□□□□ -0.78
COL9A3-213ENST00000489045 KRTAP10-5P60370 271 aa10.13□□□□□ -0.79
COL9A3-213ENST00000489045 CRIPTQ9P021 101 aa10.12□□□□□ -0.79
COL9A3-213ENST00000489045 IMUPQ9GZP8 106 aa10.1□□□□□ -0.79
COL9A3-213ENST00000489045 NDUFC1O43677 76 aa10.07□□□□□ -0.8
COL9A3-213ENST00000489045 LINC00643Q86TS7 51 aa10.05□□□□□ -0.8
COL9A3-213ENST00000489045 H0YAA0 97 aa10.03□□□□□ -0.8
COL9A3-213ENST00000489045 LINC00208Q96KT6 92 aa10.01□□□□□ -0.81
COL9A3-213ENST00000489045 A8MUN3 132 aa10□□□□□ -0.81
COL9A3-213ENST00000489045 NEBP20929 6669 aa9.96□□□□□ -0.81
COL9A3-213ENST00000489045 ADM2Q7Z4H4 148 aa9.93□□□□□ -0.82
COL9A3-213ENST00000489045 OCR1Q9BZK8 76 aa9.93□□□□□ -0.82
COL9A3-213ENST00000489045 MP68P56378 58 aa9.91□□□□□ -0.82
COL9A3-213ENST00000489045 MUC12Q9UKN1 5478 aa9.89□□□□□ -0.83
COL9A3-213ENST00000489045 A0A1B0GV90 55 aa9.86□□□□□ -0.83
COL9A3-213ENST00000489045 KRTAP5-9P26371 169 aa9.82□□□□□ -0.84
COL9A3-213ENST00000489045 H3BPC8 53 aa9.75□□□□□ -0.85
COL9A3-213ENST00000489045 KMT2DO14686 5537 aa9.7□□□□□ -0.86
COL9A3-213ENST00000489045 DMAC1Q96GE9 116 aa9.7□□□□□ -0.86
COL9A3-213ENST00000489045 PRO2289Q9P1D8 64 aa9.7□□□□□ -0.86
COL9A3-213ENST00000489045 J3QR89 54 aa9.69□□□□□ -0.86
COL9A3-213ENST00000489045 P0C880 135 aa9.69□□□□□ -0.86
COL9A3-213ENST00000489045 R4GN34 69 aa9.69□□□□□ -0.86
COL9A3-213ENST00000489045 MT1XP80297 61 aa9.68□□□□□ -0.86
COL9A3-213ENST00000489045 SCGB1A1P11684 91 aa9.67□□□□□ -0.86
COL9A3-213ENST00000489045 PLAC4Q8WY50 150 aa9.67□□□□□ -0.86
COL9A3-213ENST00000489045 C20orf197Q8N268 126 aa9.66□□□□□ -0.86
COL9A3-213ENST00000489045 KRTAP20-1Q3LI63 56 aa9.63□□□□□ -0.87
COL9A3-213ENST00000489045 MDN1Q9NU22 5596 aa9.61□□□□□ -0.87
COL9A3-213ENST00000489045 M0QZ58 72 aa9.61□□□□□ -0.87
COL9A3-213ENST00000489045 KRTAP3-2Q9BYR7 98 aa9.58□□□□□ -0.88
COL9A3-213ENST00000489045 SPRR2FQ96RM1 72 aa9.51□□□□□ -0.89
COL9A3-213ENST00000489045 TRAV7A0A075B6U4 112 aa9.48□□□□□ -0.89
COL9A3-213ENST00000489045 LINC01554Q52M75 96 aa9.48□□□□□ -0.89
COL9A3-213ENST00000489045 KRTAP12-2P59991 146 aa9.45□□□□□ -0.9
COL9A3-213ENST00000489045 KRTAP8-1Q8IUC2 63 aa9.44□□□□□ -0.9
COL9A3-213ENST00000489045 ACYP2P14621 99 aa9.42□□□□□ -0.9
COL9A3-213ENST00000489045 SPRR2EP22531 72 aa9.41□□□□□ -0.9
COL9A3-213ENST00000489045 SPRR2BP35325 72 aa9.41□□□□□ -0.9
COL9A3-213ENST00000489045 SPRR2AP35326 72 aa9.41□□□□□ -0.9
COL9A3-213ENST00000489045 MT-ATP8P03928 68 aa9.4□□□□□ -0.9
COL9A3-213ENST00000489045 SMIM20Q8N5G0 67 aa9.36□□□□□ -0.91
COL9A3-213ENST00000489045 KRTAP2-3P0C7H8 128 aa9.34□□□□□ -0.91
COL9A3-213ENST00000489045 SPTSSBQ8NFR3 76 aa9.34□□□□□ -0.91
COL9A3-213ENST00000489045 KRTAP2-4Q9BYR9 128 aa9.34□□□□□ -0.91
COL9A3-213ENST00000489045 KRTAP4-8A0A0G2JLE6 195 aa9.3□□□□□ -0.92
COL9A3-213ENST00000489045 KRTAP4-8Q9BYQ9 185 aa9.3□□□□□ -0.92
COL9A3-213ENST00000489045 CHKB-CPT1BH3BT56 60 aa9.27□□□□□ -0.93
COL9A3-213ENST00000489045 K7ERU9 68 aa9.27□□□□□ -0.93
COL9A3-213ENST00000489045 LCE1AQ5T7P2 110 aa9.25□□□□□ -0.93
COL9A3-213ENST00000489045 KRTAP10-7P60409 375 aaPredicted RBP9.24□□□□□ -0.93
COL9A3-213ENST00000489045 SNURFQ9Y675 71 aa9.23□□□□□ -0.93
COL9A3-213ENST00000489045 KRTAP10-12P60413 245 aa9.18□□□□□ -0.94
COL9A3-213ENST00000489045 SPANXA2-OT1Q8N9U9 137 aa9.1□□□□□ -0.95
COL9A3-213ENST00000489045 SPRR2DP22532 72 aa9.09□□□□□ -0.95
COL9A3-213ENST00000489045 KRTAP2-2Q9BYT5 123 aa9.03□□□□□ -0.96
COL9A3-213ENST00000489045 KRTAP2-1Q9BYU5 128 aa9.03□□□□□ -0.96
COL9A3-213ENST00000489045 KRTAP13-4Q3LI77 160 aa9.02□□□□□ -0.97
COL9A3-213ENST00000489045 SERP2Q8N6R1 65 aa9.01□□□□□ -0.97
COL9A3-213ENST00000489045 CAMK2N1Q7Z7J9 78 aa8.89□□□□□ -0.99
COL9A3-213ENST00000489045 COA5Q86WW8 74 aa8.88□□□□□ -0.99
COL9A3-213ENST00000489045 LCE3BQ5TA77 95 aa8.85□□□□□ -0.99
COL9A3-213ENST00000489045 SEC61GP60059 68 aa8.75□□□□□ -1.01
COL9A3-213ENST00000489045 SERP1Q9Y6X1 66 aa8.74□□□□□ -1.01
COL9A3-213ENST00000489045 A0A0D9SG42 100 aa8.73□□□□□ -1.01
COL9A3-213ENST00000489045 COX7CP15954 63 aa8.69□□□□□ -1.02
COL9A3-213ENST00000489045 SPATA8Q6RVD6 105 aa8.68□□□□□ -1.02
COL9A3-213ENST00000489045 KRTAP19-7Q3SYF9 63 aa8.65□□□□□ -1.02
COL9A3-213ENST00000489045 A0A1B0GU33 70 aa8.62□□□□□ -1.03
COL9A3-213ENST00000489045 CYSTM1Q9H1C7 97 aa8.61□□□□□ -1.03
COL9A3-213ENST00000489045 H7BZZ5 65 aa8.6□□□□□ -1.03
COL9A3-213ENST00000489045 SPINT4Q6UDR6 99 aa8.6□□□□□ -1.03
COL9A3-213ENST00000489045 MT1EP04732 61 aa8.58□□□□□ -1.04
COL9A3-213ENST00000489045 LCE5AQ5TCM9 118 aa8.57□□□□□ -1.04
COL9A3-213ENST00000489045 KRTAP12-1P59990 96 aa8.54□□□□□ -1.04
COL9A3-213ENST00000489045 KRTAP19-3Q7Z4W3 81 aa8.53□□□□□ -1.04
COL9A3-213ENST00000489045 DSTQ03001 7570 aaKnown RBP8.41□□□□□ -1.06
COL9A3-213ENST00000489045 A0A1B0GU69 56 aa8.41□□□□□ -1.06
COL9A3-213ENST00000489045 KRTAP19-5Q3LI72 72 aa8.41□□□□□ -1.06
COL9A3-213ENST00000489045 SMIM26A0A096LP01 95 aa8.37□□□□□ -1.07
COL9A3-213ENST00000489045 A8MU10 97 aa8.34□□□□□ -1.07
COL9A3-213ENST00000489045 ANAPC13Q9BS18 74 aa8.31□□□□□ -1.08
COL9A3-213ENST00000489045 MT1GP13640 62 aa8.3□□□□□ -1.08
COL9A3-213ENST00000489045 KRTAP4-9Q9BYQ8 210 aa8.26□□□□□ -1.09
COL9A3-213ENST00000489045 PP632Q6XCG6 107 aa8.24□□□□□ -1.09
COL9A3-213ENST00000489045 MT1MQ8N339 61 aa8.19□□□□□ -1.1
COL9A3-213ENST00000489045 MT1LQ93083 61 aa8.19□□□□□ -1.1
COL9A3-213ENST00000489045 C10orf95Q9H7T3 257 aa8.18□□□□□ -1.1
COL9A3-213ENST00000489045 CCDC179H3BU77 68 aa8.17□□□□□ -1.1
COL9A3-213ENST00000489045 LCE3AQ5TA76 89 aa8.17□□□□□ -1.1
COL9A3-213ENST00000489045 TNP1P09430 55 aa8.15□□□□□ -1.1
COL9A3-213ENST00000489045 PRR15LQ9BU68 103 aa8.12□□□□□ -1.11
COL9A3-213ENST00000489045 ATP5EP56381 51 aaPredicted RBP8.09□□□□□ -1.11
COL9A3-213ENST00000489045 GPR98Q8WXG9 6306 aa8.09□□□□□ -1.12
COL9A3-213ENST00000489045 LCE1DQ5T752 114 aa8.06□□□□□ -1.12
COL9A3-213ENST00000489045 LCE4AQ5TA78 99 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms