RNA–Protein interactions for RNA: ENST00000488765.1

MCF2L-229, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2

Gene MCF2L, Length 3,205 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-229ENST00000488765 PKD1P98161 4303 aa8.59□□□□□ -1.03
MCF2L-229ENST00000488765 SACSQ9NZJ4 4579 aa8.59□□□□□ -1.04
MCF2L-229ENST00000488765 KRTAP1-4P0C5Y4 121 aa8.54□□□□□ -1.04
MCF2L-229ENST00000488765 DYNC1H1Q14204 4646 aaKnown RBP8.51□□□□□ -1.05
MCF2L-229ENST00000488765 KRTAP10-6P60371 365 aaPredicted RBP8.43□□□□□ -1.06
MCF2L-229ENST00000488765 KRTAP12-2P59991 146 aa8.4□□□□□ -1.07
MCF2L-229ENST00000488765 LRP1Q07954 4544 aaKnown RBP8.38□□□□□ -1.07
MCF2L-229ENST00000488765 MYCBP2O75592 4640 aa8.37□□□□□ -1.07
MCF2L-229ENST00000488765 LUZP6Q538Z0 58 aa8.37□□□□□ -1.07
MCF2L-229ENST00000488765 S4R3F8 94 aa8.37□□□□□ -1.07
MCF2L-229ENST00000488765 APOBP04114 4563 aaKnown RBP8.36□□□□□ -1.07
MCF2L-229ENST00000488765 KRTAP21-3Q3LHN1 58 aa8.31□□□□□ -1.08
MCF2L-229ENST00000488765 KRTAP3-2Q9BYR7 98 aa8.28□□□□□ -1.08
MCF2L-229ENST00000488765 RYR2Q92736 4967 aa8.28□□□□□ -1.08
MCF2L-229ENST00000488765 KRTAP3-3Q9BYR6 98 aa8.27□□□□□ -1.09
MCF2L-229ENST00000488765 A0A1B0GVY2 172 aa8.24□□□□□ -1.09
MCF2L-229ENST00000488765 KIAA1109Q2LD37 5005 aa8.23□□□□□ -1.09
MCF2L-229ENST00000488765 RYR3Q15413 4870 aa8.23□□□□□ -1.09
MCF2L-229ENST00000488765 FAT3Q8TDW7 4589 aa8.19□□□□□ -1.1
MCF2L-229ENST00000488765 KRTAP10-8P60410 259 aa8.16□□□□□ -1.1
MCF2L-229ENST00000488765 Q5VSD8 79 aa8.16□□□□□ -1.1
MCF2L-229ENST00000488765 KRTAP12-1P59990 96 aa8.15□□□□□ -1.1
MCF2L-229ENST00000488765 HSPG2P98160 4391 aa8.13□□□□□ -1.11
MCF2L-229ENST00000488765 KRTAP10-4P60372 401 aaPredicted RBP8.12□□□□□ -1.11
MCF2L-229ENST00000488765 XP32Q5T750 250 aa8.06□□□□□ -1.12
MCF2L-229ENST00000488765 KRTAP17-1Q9BYP8 105 aa8.05□□□□□ -1.12
MCF2L-229ENST00000488765 PKHD1L1Q86WI1 4243 aa8.04□□□□□ -1.12
MCF2L-229ENST00000488765 RYR1P21817 5038 aa8.04□□□□□ -1.12
MCF2L-229ENST00000488765 LPAP08519 4548 aa8.03□□□□□ -1.12
MCF2L-229ENST00000488765 PLAC4Q8WY50 150 aa8.02□□□□□ -1.13
MCF2L-229ENST00000488765 EPPK1P58107 5090 aaKnown RBP8.01□□□□□ -1.13
MCF2L-229ENST00000488765 RPS29P62273 56 aaKnown RBP7.91□□□□□ -1.14
MCF2L-229ENST00000488765 LRP2P98164 4655 aa7.87□□□□□ -1.15
MCF2L-229ENST00000488765 TNXBP22105 4242 aa7.85□□□□□ -1.15
MCF2L-229ENST00000488765 M0QZ58 72 aa7.83□□□□□ -1.16
MCF2L-229ENST00000488765 KRTAP4-5Q9BYR2 181 aa7.83□□□□□ -1.16
MCF2L-229ENST00000488765 ABCA13Q86UQ4 5058 aa7.81□□□□□ -1.16
MCF2L-229ENST00000488765 SEC61BP60468 96 aaKnown RBP7.8□□□□□ -1.16
MCF2L-229ENST00000488765 MT1HL1P0DM35 61 aa7.73□□□□□ -1.17
MCF2L-229ENST00000488765 R4GN34 69 aa7.72□□□□□ -1.17
MCF2L-229ENST00000488765 MUC2Q02817 5179 aa7.63□□□□□ -1.19
MCF2L-229ENST00000488765 J3QL48 77 aa7.62□□□□□ -1.19
MCF2L-229ENST00000488765 LORP23490 312 aaPredicted RBP7.62□□□□□ -1.19
MCF2L-229ENST00000488765 HERC2O95714 4834 aa7.59□□□□□ -1.19
MCF2L-229ENST00000488765 CAMK2N1Q7Z7J9 78 aa7.5□□□□□ -1.21
MCF2L-229ENST00000488765 HERC1Q15751 4861 aa7.42□□□□□ -1.22
MCF2L-229ENST00000488765 KRTAP4-1Q9BYQ7 146 aa7.27□□□□□ -1.25
MCF2L-229ENST00000488765 PCLOQ9Y6V0 5065 aa7.26□□□□□ -1.25
MCF2L-229ENST00000488765 RNF213Q63HN8 5207 aa7.25□□□□□ -1.25
MCF2L-229ENST00000488765 PP632Q6XCG6 107 aa7.24□□□□□ -1.25
MCF2L-229ENST00000488765 FAT4Q6V0I7 4981 aa7.23□□□□□ -1.25
MCF2L-229ENST00000488765 PRO2289Q9P1D8 64 aa7.17□□□□□ -1.26
MCF2L-229ENST00000488765 BIRC6Q9NR09 4857 aa7.15□□□□□ -1.26
MCF2L-229ENST00000488765 TNP1P09430 55 aa7.07□□□□□ -1.28
MCF2L-229ENST00000488765 UBR4Q5T4S7 5183 aa7.07□□□□□ -1.28
MCF2L-229ENST00000488765 MUC17Q685J3 4493 aa7.07□□□□□ -1.28
MCF2L-229ENST00000488765 SPRR5A0A1B0GTR4 108 aa6.97□□□□□ -1.29
MCF2L-229ENST00000488765 M0R2T5 61 aa6.94□□□□□ -1.3
MCF2L-229ENST00000488765 HMCN2Q8NDA2 5059 aa6.92□□□□□ -1.3
MCF2L-229ENST00000488765 INE1O15225 51 aa6.83□□□□□ -1.32
MCF2L-229ENST00000488765 KRTAP19-2Q3LHN2 52 aa6.8□□□□□ -1.32
MCF2L-229ENST00000488765 FLGP20930 4061 aaPredicted RBP6.78□□□□□ -1.32
MCF2L-229ENST00000488765 LCE3AQ5TA76 89 aa6.75□□□□□ -1.33
MCF2L-229ENST00000488765 KRTAP10-10P60014 251 aa6.59□□□□□ -1.35
MCF2L-229ENST00000488765 LCE2CQ5TA81 110 aa6.59□□□□□ -1.36
MCF2L-229ENST00000488765 KRTAP23-1A1A580 65 aa6.56□□□□□ -1.36
MCF2L-229ENST00000488765 MT1HP80294 61 aa6.5□□□□□ -1.37
MCF2L-229ENST00000488765 USH2AO75445 5202 aa6.44□□□□□ -1.38
MCF2L-229ENST00000488765 MT1FP04733 61 aa6.4□□□□□ -1.38
MCF2L-229ENST00000488765 FSIP2Q5CZC0 6907 aa6.39□□□□□ -1.39
MCF2L-229ENST00000488765 KRTAP19-1Q8IUB9 90 aa6.37□□□□□ -1.39
MCF2L-229ENST00000488765 MT2AP02795 61 aa6.36□□□□□ -1.39
MCF2L-229ENST00000488765 KMT2DO14686 5537 aa6.31□□□□□ -1.4
MCF2L-229ENST00000488765 KRTAP12-3P60328 96 aa6.31□□□□□ -1.4
MCF2L-229ENST00000488765 KRTAP9-8Q9BYQ0 159 aa6.27□□□□□ -1.41
MCF2L-229ENST00000488765 KRTAP8-1Q8IUC2 63 aa6.26□□□□□ -1.41
MCF2L-229ENST00000488765 KRTAP10-12P60413 245 aa6.24□□□□□ -1.41
MCF2L-229ENST00000488765 SPRR2GQ9BYE4 73 aa6.24□□□□□ -1.41
MCF2L-229ENST00000488765 KRTAP10-7P60409 375 aaPredicted RBP6.1□□□□□ -1.43
MCF2L-229ENST00000488765 MT1BP07438 61 aa6.04□□□□□ -1.44
MCF2L-229ENST00000488765 KRTAP10-5P60370 271 aa6.04□□□□□ -1.44
MCF2L-229ENST00000488765 MT1XP80297 61 aa6.02□□□□□ -1.45
MCF2L-229ENST00000488765 KRTAP9-3Q9BYQ3 159 aa5.99□□□□□ -1.45
MCF2L-229ENST00000488765 KRTAP9-6A8MVA2 160 aa5.95□□□□□ -1.46
MCF2L-229ENST00000488765 KRTAP19-8Q3LI54 63 aa5.93□□□□□ -1.46
MCF2L-229ENST00000488765 LCE2BO14633 110 aa5.91□□□□□ -1.46
MCF2L-229ENST00000488765 KRTAP19-5Q3LI72 72 aa5.91□□□□□ -1.46
MCF2L-229ENST00000488765 LCE3CQ5T5A8 94 aa5.91□□□□□ -1.46
MCF2L-229ENST00000488765 KRTAP4-7Q9BYR0 210 aa5.89□□□□□ -1.47
MCF2L-229ENST00000488765 KRTAP4-8A0A0G2JLE6 195 aa5.78□□□□□ -1.48
MCF2L-229ENST00000488765 KRTAP4-8Q9BYQ9 185 aa5.78□□□□□ -1.48
MCF2L-229ENST00000488765 LCE2AQ5TA79 106 aaPredicted RBP5.75□□□□□ -1.49
MCF2L-229ENST00000488765 SSPOA2VEC9 5147 aa5.67□□□□□ -1.5
MCF2L-229ENST00000488765 KRTAP2-3P0C7H8 128 aa5.63□□□□□ -1.51
MCF2L-229ENST00000488765 KRTAP2-4Q9BYR9 128 aa5.63□□□□□ -1.51
MCF2L-229ENST00000488765 KRTAP2-1Q9BYU5 128 aa5.63□□□□□ -1.51
MCF2L-229ENST00000488765 DSTQ03001 7570 aaKnown RBP5.63□□□□□ -1.51
MCF2L-229ENST00000488765 OBSCNQ5VST9 7968 aa5.6□□□□□ -1.51
MCF2L-229ENST00000488765 FCGBPQ9Y6R7 5405 aaPredicted RBP5.55□□□□□ -1.52
MCF2L-229ENST00000488765 CRCT1Q9UGL9 99 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms