RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 FAM240AA0A1B0GVK7 77 aa2.76□□□□□ -1.97
CUX1-208ENST00000485792 CASC2Q6XLA1 102 aa2.76□□□□□ -1.97
CUX1-208ENST00000485792 HCG22E2RYF7 251 aa2.75□□□□□ -1.97
CUX1-208ENST00000485792 PRAC1Q96KF2 57 aa2.75□□□□□ -1.97
CUX1-208ENST00000485792 ACYP1P07311 99 aa2.74□□□□□ -1.97
CUX1-208ENST00000485792 FAM236DA0A1B0GTK5 79 aa2.73□□□□□ -1.97
CUX1-208ENST00000485792 FAM236CP0DP71 79 aa2.73□□□□□ -1.97
CUX1-208ENST00000485792 H1FX-AS1Q4G0G2 97 aa2.73□□□□□ -1.97
CUX1-208ENST00000485792 C7orf65Q6ZTY9 151 aa2.73□□□□□ -1.97
CUX1-208ENST00000485792 TP53AIP1Q9HCN2 124 aa2.72□□□□□ -1.97
CUX1-208ENST00000485792 NDUFS5O43920 106 aa2.71□□□□□ -1.98
CUX1-208ENST00000485792 LCE1EQ5T753 118 aa2.7□□□□□ -1.98
CUX1-208ENST00000485792 A0A087WVE0 104 aa2.69□□□□□ -1.98
CUX1-208ENST00000485792 ATP5EP2Q5VTU8 51 aa2.69□□□□□ -1.98
CUX1-208ENST00000485792 KRTAP5-11Q6L8G4 156 aa2.69□□□□□ -1.98
CUX1-208ENST00000485792 A0A1B0GV90 55 aa2.68□□□□□ -1.98
CUX1-208ENST00000485792 KRTAP10-10P60014 251 aa2.68□□□□□ -1.98
CUX1-208ENST00000485792 C4orf26Q17RF5 130 aa2.68□□□□□ -1.98
CUX1-208ENST00000485792 LINC00643Q86TS7 51 aa2.67□□□□□ -1.98
CUX1-208ENST00000485792 CYP4F30PQ9H0H9 118 aa2.67□□□□□ -1.98
CUX1-208ENST00000485792 TRAV22A0A0B4J277 110 aa2.65□□□□□ -1.99
CUX1-208ENST00000485792 NDUFAF8A1L188 74 aa2.65□□□□□ -1.99
CUX1-208ENST00000485792 KRTAP19-6Q3LI70 58 aa2.65□□□□□ -1.99
CUX1-208ENST00000485792 LOC101927531A0A1B0GV80 90 aa2.63□□□□□ -1.99
CUX1-208ENST00000485792 UQCRQO14949 82 aa2.63□□□□□ -1.99
CUX1-208ENST00000485792 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.63□□□□□ -1.99
CUX1-208ENST00000485792 LCA10Q71F78 164 aa2.63□□□□□ -1.99
CUX1-208ENST00000485792 C1orf64Q8NEQ6 169 aa2.63□□□□□ -1.99
CUX1-208ENST00000485792 OCR1Q9BZK8 76 aa2.63□□□□□ -1.99
CUX1-208ENST00000485792 MT1BP07438 61 aa2.62□□□□□ -1.99
CUX1-208ENST00000485792 LCE1FQ5T754 118 aa2.62□□□□□ -1.99
CUX1-208ENST00000485792 NEBP20929 6669 aa2.61□□□□□ -1.99
CUX1-208ENST00000485792 ATOX1O00244 68 aa2.61□□□□□ -1.99
CUX1-208ENST00000485792 SPRR2GQ9BYE4 73 aa2.61□□□□□ -1.99
CUX1-208ENST00000485792 HIST1H4AP62805 103 aaKnown RBP2.6□□□□□ -1.99
CUX1-208ENST00000485792 CSAG1Q6PB30 78 aa2.6□□□□□ -1.99
CUX1-208ENST00000485792 S4R3F8 94 aa2.6□□□□□ -1.99
CUX1-208ENST00000485792 KRTAP19-8Q3LI54 63 aa2.59□□□□□ -1.99
CUX1-208ENST00000485792 H0Y9P7 68 aa2.58□□□□□ -2
CUX1-208ENST00000485792 J3QR89 54 aa2.58□□□□□ -2
CUX1-208ENST00000485792 IMUPQ9GZP8 106 aa2.58□□□□□ -2
CUX1-208ENST00000485792 A8MUN3 132 aa2.57□□□□□ -2
CUX1-208ENST00000485792 H0YAA0 97 aa2.57□□□□□ -2
CUX1-208ENST00000485792 KLKP1Q107X0 134 aa2.57□□□□□ -2
CUX1-208ENST00000485792 H3BPC8 53 aa2.56□□□□□ -2
CUX1-208ENST00000485792 SMIM20Q8N5G0 67 aa2.55□□□□□ -2
CUX1-208ENST00000485792 LINC00208Q96KT6 92 aa2.55□□□□□ -2
CUX1-208ENST00000485792 PRO0628Q9UI54 55 aa2.55□□□□□ -2
CUX1-208ENST00000485792 KMT2DO14686 5537 aa2.54□□□□□ -2
CUX1-208ENST00000485792 SCGB1A1P11684 91 aa2.54□□□□□ -2
CUX1-208ENST00000485792 KRTAP10-12P60413 245 aa2.54□□□□□ -2
CUX1-208ENST00000485792 CRIPTQ9P021 101 aa2.54□□□□□ -2
CUX1-208ENST00000485792 MUC12Q9UKN1 5478 aa2.54□□□□□ -2
CUX1-208ENST00000485792 KRTAP10-5P60370 271 aa2.53□□□□□ -2
CUX1-208ENST00000485792 K7ERU9 68 aa2.52□□□□□ -2.01
CUX1-208ENST00000485792 MT-ATP8P03928 68 aa2.52□□□□□ -2.01
CUX1-208ENST00000485792 MP68P56378 58 aa2.52□□□□□ -2.01
CUX1-208ENST00000485792 DMAC1Q96GE9 116 aa2.52□□□□□ -2.01
CUX1-208ENST00000485792 NDUFC1O43677 76 aa2.51□□□□□ -2.01
CUX1-208ENST00000485792 TRAV7A0A075B6U4 112 aa2.49□□□□□ -2.01
CUX1-208ENST00000485792 FAM236AA0A1B0GUQ0 79 aa2.49□□□□□ -2.01
CUX1-208ENST00000485792 FAM236BA0A1B0GV22 79 aa2.49□□□□□ -2.01
CUX1-208ENST00000485792 Q5VV11 94 aa2.49□□□□□ -2.01
CUX1-208ENST00000485792 KRTAP6-3Q3LI67 103 aa2.47□□□□□ -2.01
CUX1-208ENST00000485792 P0C880 135 aa2.45□□□□□ -2.02
CUX1-208ENST00000485792 MT1XP80297 61 aa2.45□□□□□ -2.02
CUX1-208ENST00000485792 PMAIP1Q13794 54 aa2.45□□□□□ -2.02
CUX1-208ENST00000485792 ADM2Q7Z4H4 148 aa2.45□□□□□ -2.02
CUX1-208ENST00000485792 MDN1Q9NU22 5596 aa2.45□□□□□ -2.02
CUX1-208ENST00000485792 SMIM26A0A096LP01 95 aa2.44□□□□□ -2.02
CUX1-208ENST00000485792 A6NN06 94 aa2.44□□□□□ -2.02
CUX1-208ENST00000485792 LCE3CQ5T5A8 94 aa2.44□□□□□ -2.02
CUX1-208ENST00000485792 SPANXA2-OT1Q8N9U9 137 aa2.43□□□□□ -2.02
CUX1-208ENST00000485792 ACYP2P14621 99 aa2.42□□□□□ -2.02
CUX1-208ENST00000485792 SERP2Q8N6R1 65 aa2.42□□□□□ -2.02
CUX1-208ENST00000485792 CYSTM1Q9H1C7 97 aa2.42□□□□□ -2.02
CUX1-208ENST00000485792 PSPHP1O15172 72 aa2.41□□□□□ -2.02
CUX1-208ENST00000485792 KRTAP5-9P26371 169 aa2.41□□□□□ -2.02
CUX1-208ENST00000485792 C20orf197Q8N268 126 aa2.39□□□□□ -2.03
CUX1-208ENST00000485792 SNURFQ9Y675 71 aa2.39□□□□□ -2.03
CUX1-208ENST00000485792 KRTAP12-2P59991 146 aa2.38□□□□□ -2.03
CUX1-208ENST00000485792 KRTAP13-4Q3LI77 160 aa2.38□□□□□ -2.03
CUX1-208ENST00000485792 R4GN34 69 aa2.38□□□□□ -2.03
CUX1-208ENST00000485792 KRTAP9-6A8MVA2 160 aa2.37□□□□□ -2.03
CUX1-208ENST00000485792 RPS28P62857 69 aaKnown RBP2.36□□□□□ -2.03
CUX1-208ENST00000485792 M0QZ58 72 aa2.35□□□□□ -2.03
CUX1-208ENST00000485792 COX7CP15954 63 aa2.35□□□□□ -2.03
CUX1-208ENST00000485792 SPTSSBQ8NFR3 76 aa2.35□□□□□ -2.03
CUX1-208ENST00000485792 H7BZZ5 65 aa2.34□□□□□ -2.03
CUX1-208ENST00000485792 PRO2289Q9P1D8 64 aa2.34□□□□□ -2.03
CUX1-208ENST00000485792 PLAC4Q8WY50 150 aa2.33□□□□□ -2.04
CUX1-208ENST00000485792 ANAPC13Q9BS18 74 aa2.31□□□□□ -2.04
CUX1-208ENST00000485792 KRTAP5-1Q6L8H4 278 aa2.3□□□□□ -2.04
CUX1-208ENST00000485792 COA5Q86WW8 74 aa2.3□□□□□ -2.04
CUX1-208ENST00000485792 CHKB-CPT1BH3BT56 60 aa2.29□□□□□ -2.04
CUX1-208ENST00000485792 A8MU10 97 aa2.28□□□□□ -2.04
CUX1-208ENST00000485792 LINC01554Q52M75 96 aa2.26□□□□□ -2.05
CUX1-208ENST00000485792 KTN1-AS1Q86SY8 53 aa2.26□□□□□ -2.05
CUX1-208ENST00000485792 KRTAP8-1Q8IUC2 63 aa2.24□□□□□ -2.05
CUX1-208ENST00000485792 SPRR2FQ96RM1 72 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms