RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 LINC00208Q96KT6 92 aa7.13□□□□□ -1.27
CCDC28B-205ENST00000483009 MP68P56378 58 aa7.12□□□□□ -1.27
CCDC28B-205ENST00000483009 A8MUN3 132 aa7.09□□□□□ -1.27
CCDC28B-205ENST00000483009 KLKP1Q107X0 134 aa7.09□□□□□ -1.27
CCDC28B-205ENST00000483009 SPRR2GQ9BYE4 73 aa7.07□□□□□ -1.28
CCDC28B-205ENST00000483009 NDUFC1O43677 76 aa7.06□□□□□ -1.28
CCDC28B-205ENST00000483009 H3BPC8 53 aa7.03□□□□□ -1.28
CCDC28B-205ENST00000483009 KRTAP19-8Q3LI54 63 aa7.03□□□□□ -1.28
CCDC28B-205ENST00000483009 IMUPQ9GZP8 106 aa7.03□□□□□ -1.28
CCDC28B-205ENST00000483009 MT1BP07438 61 aa7.02□□□□□ -1.29
CCDC28B-205ENST00000483009 SCGB1A1P11684 91 aa7.02□□□□□ -1.29
CCDC28B-205ENST00000483009 Q5VV11 94 aa7.02□□□□□ -1.29
CCDC28B-205ENST00000483009 CRIPTQ9P021 101 aa6.99□□□□□ -1.29
CCDC28B-205ENST00000483009 H0YAA0 97 aa6.98□□□□□ -1.29
CCDC28B-205ENST00000483009 MACF1Q9UPN3 7388 aaKnown RBP6.97□□□□□ -1.29
CCDC28B-205ENST00000483009 K7ERU9 68 aa6.94□□□□□ -1.3
CCDC28B-205ENST00000483009 MT-ATP8P03928 68 aa6.93□□□□□ -1.3
CCDC28B-205ENST00000483009 A6NN06 94 aa6.91□□□□□ -1.3
CCDC28B-205ENST00000483009 DMAC1Q96GE9 116 aa6.91□□□□□ -1.3
CCDC28B-205ENST00000483009 ADM2Q7Z4H4 148 aa6.9□□□□□ -1.3
CCDC28B-205ENST00000483009 SYNE2Q8WXH0 6885 aaKnown RBP6.87□□□□□ -1.31
CCDC28B-205ENST00000483009 SMIM20Q8N5G0 67 aa6.86□□□□□ -1.31
CCDC28B-205ENST00000483009 TRAV7A0A075B6U4 112 aa6.84□□□□□ -1.31
CCDC28B-205ENST00000483009 KRTAP10-5P60370 271 aa6.84□□□□□ -1.31
CCDC28B-205ENST00000483009 KRTAP6-3Q3LI67 103 aa6.81□□□□□ -1.32
CCDC28B-205ENST00000483009 C20orf197Q8N268 126 aa6.77□□□□□ -1.33
CCDC28B-205ENST00000483009 P0C880 135 aa6.76□□□□□ -1.33
CCDC28B-205ENST00000483009 ACYP2P14621 99 aa6.75□□□□□ -1.33
CCDC28B-205ENST00000483009 R4GN34 69 aa6.72□□□□□ -1.33
CCDC28B-205ENST00000483009 KRTAP3-2Q9BYR7 98 aa6.71□□□□□ -1.34
CCDC28B-205ENST00000483009 SNURFQ9Y675 71 aa6.69□□□□□ -1.34
CCDC28B-205ENST00000483009 M0QZ58 72 aa6.68□□□□□ -1.34
CCDC28B-205ENST00000483009 SPTSSBQ8NFR3 76 aa6.66□□□□□ -1.34
CCDC28B-205ENST00000483009 PLAC4Q8WY50 150 aa6.65□□□□□ -1.34
CCDC28B-205ENST00000483009 CHKB-CPT1BH3BT56 60 aa6.63□□□□□ -1.35
CCDC28B-205ENST00000483009 SERP2Q8N6R1 65 aa6.63□□□□□ -1.35
CCDC28B-205ENST00000483009 PRO2289Q9P1D8 64 aa6.62□□□□□ -1.35
CCDC28B-205ENST00000483009 SPANXA2-OT1Q8N9U9 137 aa6.61□□□□□ -1.35
CCDC28B-205ENST00000483009 MT1XP80297 61 aa6.6□□□□□ -1.35
CCDC28B-205ENST00000483009 LINC01554Q52M75 96 aa6.57□□□□□ -1.36
CCDC28B-205ENST00000483009 NEBP20929 6669 aa6.53□□□□□ -1.36
CCDC28B-205ENST00000483009 KRTAP5-9P26371 169 aa6.52□□□□□ -1.37
CCDC28B-205ENST00000483009 MUC12Q9UKN1 5478 aa6.5□□□□□ -1.37
CCDC28B-205ENST00000483009 KMT2DO14686 5537 aa6.44□□□□□ -1.38
CCDC28B-205ENST00000483009 COX7CP15954 63 aa6.44□□□□□ -1.38
CCDC28B-205ENST00000483009 KRTAP12-2P59991 146 aa6.43□□□□□ -1.38
CCDC28B-205ENST00000483009 COA5Q86WW8 74 aa6.42□□□□□ -1.38
CCDC28B-205ENST00000483009 KRTAP8-1Q8IUC2 63 aa6.35□□□□□ -1.39
CCDC28B-205ENST00000483009 SPRR2FQ96RM1 72 aa6.35□□□□□ -1.39
CCDC28B-205ENST00000483009 MDN1Q9NU22 5596 aa6.35□□□□□ -1.39
CCDC28B-205ENST00000483009 KRTAP13-4Q3LI77 160 aa6.34□□□□□ -1.39
CCDC28B-205ENST00000483009 H7BZZ5 65 aa6.33□□□□□ -1.4
CCDC28B-205ENST00000483009 CYSTM1Q9H1C7 97 aa6.32□□□□□ -1.4
CCDC28B-205ENST00000483009 KRTAP10-7P60409 375 aaPredicted RBP6.29□□□□□ -1.4
CCDC28B-205ENST00000483009 SEC61GP60059 68 aa6.28□□□□□ -1.4
CCDC28B-205ENST00000483009 KRTAP4-8A0A0G2JLE6 195 aa6.27□□□□□ -1.41
CCDC28B-205ENST00000483009 KRTAP20-1Q3LI63 56 aa6.27□□□□□ -1.41
CCDC28B-205ENST00000483009 KRTAP4-8Q9BYQ9 185 aa6.27□□□□□ -1.41
CCDC28B-205ENST00000483009 SERP1Q9Y6X1 66 aa6.27□□□□□ -1.41
CCDC28B-205ENST00000483009 KRTAP10-12P60413 245 aa6.26□□□□□ -1.41
CCDC28B-205ENST00000483009 ANAPC13Q9BS18 74 aa6.24□□□□□ -1.41
CCDC28B-205ENST00000483009 SPRR2EP22531 72 aa6.23□□□□□ -1.41
CCDC28B-205ENST00000483009 SPRR2BP35325 72 aa6.23□□□□□ -1.41
CCDC28B-205ENST00000483009 SPRR2AP35326 72 aa6.23□□□□□ -1.41
CCDC28B-205ENST00000483009 SVIPQ8NHG7 77 aa6.23□□□□□ -1.41
CCDC28B-205ENST00000483009 CAMK2N1Q7Z7J9 78 aa6.2□□□□□ -1.42
CCDC28B-205ENST00000483009 A0A0D9SG42 100 aa6.16□□□□□ -1.42
CCDC28B-205ENST00000483009 A0A1B0GU33 70 aa6.16□□□□□ -1.42
CCDC28B-205ENST00000483009 LCE1AQ5T7P2 110 aa6.16□□□□□ -1.42
CCDC28B-205ENST00000483009 SPATA8Q6RVD6 105 aa6.14□□□□□ -1.43
CCDC28B-205ENST00000483009 CCDC179H3BU77 68 aa6.12□□□□□ -1.43
CCDC28B-205ENST00000483009 KRTAP2-3P0C7H8 128 aa6.12□□□□□ -1.43
CCDC28B-205ENST00000483009 KRTAP2-4Q9BYR9 128 aa6.12□□□□□ -1.43
CCDC28B-205ENST00000483009 A0A1B0GU69 56 aa6.08□□□□□ -1.44
CCDC28B-205ENST00000483009 SPINT4Q6UDR6 99 aa6.07□□□□□ -1.44
CCDC28B-205ENST00000483009 ATP5EP56381 51 aaPredicted RBP6.05□□□□□ -1.44
CCDC28B-205ENST00000483009 SPRR2DP22532 72 aa6.03□□□□□ -1.44
CCDC28B-205ENST00000483009 KRTAP12-1P59990 96 aa6.03□□□□□ -1.44
CCDC28B-205ENST00000483009 SMIM26A0A096LP01 95 aa6□□□□□ -1.45
CCDC28B-205ENST00000483009 A8MU10 97 aa5.94□□□□□ -1.46
CCDC28B-205ENST00000483009 PRR15LQ9BU68 103 aa5.93□□□□□ -1.46
CCDC28B-205ENST00000483009 KRTAP2-2Q9BYT5 123 aa5.93□□□□□ -1.46
CCDC28B-205ENST00000483009 KRTAP2-1Q9BYU5 128 aa5.93□□□□□ -1.46
CCDC28B-205ENST00000483009 TMEM258P61165 79 aa5.9□□□□□ -1.46
CCDC28B-205ENST00000483009 KRTAP19-7Q3SYF9 63 aa5.89□□□□□ -1.47
CCDC28B-205ENST00000483009 LINC01558Q9Y6Z2 57 aa5.89□□□□□ -1.47
CCDC28B-205ENST00000483009 MT1EP04732 61 aa5.85□□□□□ -1.47
CCDC28B-205ENST00000483009 LCE3BQ5TA77 95 aa5.85□□□□□ -1.47
CCDC28B-205ENST00000483009 LCE5AQ5TCM9 118 aa5.78□□□□□ -1.48
CCDC28B-205ENST00000483009 KRTAP19-3Q7Z4W3 81 aa5.78□□□□□ -1.48
CCDC28B-205ENST00000483009 KRTAP19-5Q3LI72 72 aa5.76□□□□□ -1.49
CCDC28B-205ENST00000483009 C10orf95Q9H7T3 257 aa5.76□□□□□ -1.49
CCDC28B-205ENST00000483009 TNP1P09430 55 aa5.74□□□□□ -1.49
CCDC28B-205ENST00000483009 UQCR11O14957 56 aa5.73□□□□□ -1.49
CCDC28B-205ENST00000483009 LCE3AQ5TA76 89 aa5.67□□□□□ -1.5
CCDC28B-205ENST00000483009 MT1GP13640 62 aa5.65□□□□□ -1.5
CCDC28B-205ENST00000483009 PP632Q6XCG6 107 aa5.61□□□□□ -1.51
CCDC28B-205ENST00000483009 MIR22HGQ0VDD5 57 aa5.6□□□□□ -1.51
CCDC28B-205ENST00000483009 MT1LQ93083 61 aa5.6□□□□□ -1.51
CCDC28B-205ENST00000483009 V9GYY9 64 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms