RNA–Protein interactions for RNA: ENST00000477573.1

RTFDC1-207, Transcript of Protein RTF2 homolog, humanhuman

TSL 1 (best)

Gene RTFDC1, Length 2,193 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-207ENST00000477573 SMR3BP02814 79 aaPredicted RBP6.87□□□□□ -1.31
RTFDC1-207ENST00000477573 RPL37P61927 97 aaKnown RBP6.86□□□□□ -1.31
RTFDC1-207ENST00000477573 FAT1Q14517 4588 aa6.81□□□□□ -1.32
RTFDC1-207ENST00000477573 Q8N1X5 172 aa6.8□□□□□ -1.32
RTFDC1-207ENST00000477573 C10orf95Q9H7T3 257 aa6.79□□□□□ -1.32
RTFDC1-207ENST00000477573 KRTAP10-4P60372 401 aaPredicted RBP6.78□□□□□ -1.32
RTFDC1-207ENST00000477573 RPS29P62273 56 aaKnown RBP6.78□□□□□ -1.32
RTFDC1-207ENST00000477573 RYR3Q15413 4870 aa6.7□□□□□ -1.34
RTFDC1-207ENST00000477573 PKHD1L1Q86WI1 4243 aa6.7□□□□□ -1.34
RTFDC1-207ENST00000477573 CAMK2N1Q7Z7J9 78 aa6.68□□□□□ -1.34
RTFDC1-207ENST00000477573 HSPG2P98160 4391 aa6.67□□□□□ -1.34
RTFDC1-207ENST00000477573 Q5VSD8 79 aa6.66□□□□□ -1.34
RTFDC1-207ENST00000477573 RYR1P21817 5038 aa6.59□□□□□ -1.35
RTFDC1-207ENST00000477573 XP32Q5T750 250 aa6.58□□□□□ -1.36
RTFDC1-207ENST00000477573 KRTAP3-1Q9BYR8 98 aa6.56□□□□□ -1.36
RTFDC1-207ENST00000477573 KRTAP10-8P60410 259 aa6.55□□□□□ -1.36
RTFDC1-207ENST00000477573 TNXBP22105 4242 aa6.55□□□□□ -1.36
RTFDC1-207ENST00000477573 S4R3F8 94 aa6.54□□□□□ -1.36
RTFDC1-207ENST00000477573 PLAC4Q8WY50 150 aa6.52□□□□□ -1.37
RTFDC1-207ENST00000477573 LRP1Q07954 4544 aaKnown RBP6.51□□□□□ -1.37
RTFDC1-207ENST00000477573 A0A0D9SG42 100 aa6.51□□□□□ -1.37
RTFDC1-207ENST00000477573 KRTAP3-2Q9BYR7 98 aa6.51□□□□□ -1.37
RTFDC1-207ENST00000477573 KRTAP13-4Q3LI77 160 aa6.51□□□□□ -1.37
RTFDC1-207ENST00000477573 KRTAP10-6P60371 365 aaPredicted RBP6.5□□□□□ -1.37
RTFDC1-207ENST00000477573 FAT3Q8TDW7 4589 aa6.5□□□□□ -1.37
RTFDC1-207ENST00000477573 C9orf92A6NGG3 77 aa6.5□□□□□ -1.37
RTFDC1-207ENST00000477573 J3QL48 77 aa6.5□□□□□ -1.37
RTFDC1-207ENST00000477573 KIAA1109Q2LD37 5005 aa6.48□□□□□ -1.37
RTFDC1-207ENST00000477573 EPPK1P58107 5090 aaKnown RBP6.45□□□□□ -1.38
RTFDC1-207ENST00000477573 KRTAP17-1Q9BYP8 105 aa6.44□□□□□ -1.38
RTFDC1-207ENST00000477573 DMBT1Q9UGM3 2413 aaPredicted RBP6.43□□□□□ -1.38
RTFDC1-207ENST00000477573 KRTAP12-2P59991 146 aa6.4□□□□□ -1.39
RTFDC1-207ENST00000477573 MT1HL1P0DM35 61 aa6.39□□□□□ -1.39
RTFDC1-207ENST00000477573 MYCBP2O75592 4640 aa6.39□□□□□ -1.39
RTFDC1-207ENST00000477573 PRO2289Q9P1D8 64 aa6.35□□□□□ -1.39
RTFDC1-207ENST00000477573 KRTAP12-1P59990 96 aa6.34□□□□□ -1.4
RTFDC1-207ENST00000477573 KRTAP4-5Q9BYR2 181 aa6.26□□□□□ -1.41
RTFDC1-207ENST00000477573 KRTAP3-3Q9BYR6 98 aa6.24□□□□□ -1.41
RTFDC1-207ENST00000477573 BIRC6Q9NR09 4857 aa6.15□□□□□ -1.42
RTFDC1-207ENST00000477573 M0QZ58 72 aa6.15□□□□□ -1.43
RTFDC1-207ENST00000477573 ABCA13Q86UQ4 5058 aa6.14□□□□□ -1.43
RTFDC1-207ENST00000477573 HERC2O95714 4834 aa6.14□□□□□ -1.43
RTFDC1-207ENST00000477573 PP632Q6XCG6 107 aa6.13□□□□□ -1.43
RTFDC1-207ENST00000477573 INE1O15225 51 aa6.08□□□□□ -1.44
RTFDC1-207ENST00000477573 LRP2P98164 4655 aa6.07□□□□□ -1.44
RTFDC1-207ENST00000477573 LPAP08519 4548 aa6.04□□□□□ -1.44
RTFDC1-207ENST00000477573 R4GN34 69 aa6.03□□□□□ -1.44
RTFDC1-207ENST00000477573 SPRR5A0A1B0GTR4 108 aa6□□□□□ -1.45
RTFDC1-207ENST00000477573 MUC17Q685J3 4493 aa5.88□□□□□ -1.47
RTFDC1-207ENST00000477573 PCLOQ9Y6V0 5065 aa5.85□□□□□ -1.47
RTFDC1-207ENST00000477573 HERC1Q15751 4861 aa5.8□□□□□ -1.48
RTFDC1-207ENST00000477573 KRTAP4-1Q9BYQ7 146 aa5.79□□□□□ -1.48
RTFDC1-207ENST00000477573 HMCN2Q8NDA2 5059 aa5.77□□□□□ -1.49
RTFDC1-207ENST00000477573 KRTAP23-1A1A580 65 aa5.74□□□□□ -1.49
RTFDC1-207ENST00000477573 KRTAP19-2Q3LHN2 52 aa5.66□□□□□ -1.5
RTFDC1-207ENST00000477573 FLGP20930 4061 aaPredicted RBP5.64□□□□□ -1.51
RTFDC1-207ENST00000477573 MUC2Q02817 5179 aa5.63□□□□□ -1.51
RTFDC1-207ENST00000477573 RNF213Q63HN8 5207 aa5.48□□□□□ -1.53
RTFDC1-207ENST00000477573 TNP1P09430 55 aa5.48□□□□□ -1.53
RTFDC1-207ENST00000477573 LCE2CQ5TA81 110 aa5.46□□□□□ -1.53
RTFDC1-207ENST00000477573 UBR4Q5T4S7 5183 aa5.46□□□□□ -1.54
RTFDC1-207ENST00000477573 LORP23490 312 aaPredicted RBP5.42□□□□□ -1.54
RTFDC1-207ENST00000477573 M0R2T5 61 aa5.41□□□□□ -1.54
RTFDC1-207ENST00000477573 FAT4Q6V0I7 4981 aa5.39□□□□□ -1.55
RTFDC1-207ENST00000477573 MT1HP80294 61 aa5.37□□□□□ -1.55
RTFDC1-207ENST00000477573 LCE2DQ5TA82 110 aaPredicted RBP5.29□□□□□ -1.56
RTFDC1-207ENST00000477573 SPRR2GQ9BYE4 73 aa5.22□□□□□ -1.57
RTFDC1-207ENST00000477573 KRTAP10-10P60014 251 aa5.21□□□□□ -1.58
RTFDC1-207ENST00000477573 MT2AP02795 61 aa5.2□□□□□ -1.58
RTFDC1-207ENST00000477573 KRTAP9-8Q9BYQ0 159 aa5.19□□□□□ -1.58
RTFDC1-207ENST00000477573 MT1FP04733 61 aa5.16□□□□□ -1.58
RTFDC1-207ENST00000477573 KRTAP19-1Q8IUB9 90 aa5.15□□□□□ -1.58
RTFDC1-207ENST00000477573 KRTAP19-8Q3LI54 63 aa5.04□□□□□ -1.6
RTFDC1-207ENST00000477573 LCE2AQ5TA79 106 aaPredicted RBP5.01□□□□□ -1.61
RTFDC1-207ENST00000477573 KRTAP9-3Q9BYQ3 159 aa4.99□□□□□ -1.61
RTFDC1-207ENST00000477573 LCE3AQ5TA76 89 aa4.98□□□□□ -1.61
RTFDC1-207ENST00000477573 KRTAP8-1Q8IUC2 63 aa4.97□□□□□ -1.61
RTFDC1-207ENST00000477573 MT1BP07438 61 aa4.93□□□□□ -1.62
RTFDC1-207ENST00000477573 KRTAP10-12P60413 245 aa4.91□□□□□ -1.62
RTFDC1-207ENST00000477573 MT1XP80297 61 aa4.82□□□□□ -1.64
RTFDC1-207ENST00000477573 KRTAP10-5P60370 271 aa4.82□□□□□ -1.64
RTFDC1-207ENST00000477573 LCE2BO14633 110 aa4.81□□□□□ -1.64
RTFDC1-207ENST00000477573 KRTAP12-3P60328 96 aa4.75□□□□□ -1.65
RTFDC1-207ENST00000477573 USH2AO75445 5202 aa4.67□□□□□ -1.66
RTFDC1-207ENST00000477573 KRTAP2-3P0C7H8 128 aa4.66□□□□□ -1.66
RTFDC1-207ENST00000477573 KRTAP2-4Q9BYR9 128 aa4.66□□□□□ -1.66
RTFDC1-207ENST00000477573 KRTAP2-1Q9BYU5 128 aa4.66□□□□□ -1.66
RTFDC1-207ENST00000477573 KRTAP10-7P60409 375 aaPredicted RBP4.64□□□□□ -1.67
RTFDC1-207ENST00000477573 KRTAP9-6A0A140TA67 174 aa4.6□□□□□ -1.67
RTFDC1-207ENST00000477573 LCE3CQ5T5A8 94 aa4.53□□□□□ -1.68
RTFDC1-207ENST00000477573 SSPOA2VEC9 5147 aa4.51□□□□□ -1.69
RTFDC1-207ENST00000477573 KRTAP19-6Q3LI70 58 aa4.5□□□□□ -1.69
RTFDC1-207ENST00000477573 KRTAP19-5Q3LI72 72 aa4.41□□□□□ -1.7
RTFDC1-207ENST00000477573 KMT2DO14686 5537 aa4.4□□□□□ -1.7
RTFDC1-207ENST00000477573 KRTAP4-8A0A0G2JLE6 195 aa4.4□□□□□ -1.71
RTFDC1-207ENST00000477573 KRTAP4-8Q9BYQ9 185 aa4.4□□□□□ -1.71
RTFDC1-207ENST00000477573 FSIP2Q5CZC0 6907 aa4.37□□□□□ -1.71
RTFDC1-207ENST00000477573 KRTAP9-6A8MVA2 160 aa4.36□□□□□ -1.71
RTFDC1-207ENST00000477573 KRTAP2-2Q9BYT5 123 aa4.33□□□□□ -1.72
RTFDC1-207ENST00000477573 KRTAP19-7Q3SYF9 63 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms