RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 CSMD1Q96PZ7 3565 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 ITPR1Q14643 2758 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 STAB1Q9NY15 2570 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 PTPN13Q12923 2485 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 DMXL2Q8TDJ6 3036 aa0.38□□□□□ -2.35
VPS50-213ENST00000477572 HSPG2P98160 4391 aa0.37□□□□□ -2.35
VPS50-213ENST00000477572 DNAH12Q6ZR08 3092 aa0.37□□□□□ -2.35
VPS50-213ENST00000477572 VPS13CQ709C8 3753 aa0.37□□□□□ -2.35
VPS50-213ENST00000477572 NSD1Q96L73 2696 aaPredicted RBP0.37□□□□□ -2.35
VPS50-213ENST00000477572 MXRA5Q9NR99 2828 aa0.37□□□□□ -2.35
VPS50-213ENST00000477572 SZT2Q5T011 3432 aa0.36□□□□□ -2.35
VPS50-213ENST00000477572 NCOR2Q9Y618 2525 aa0.36□□□□□ -2.35
VPS50-213ENST00000477572 HTTP42858 3142 aa0.36□□□□□ -2.35
VPS50-213ENST00000477572 DNAH9Q9NYC9 4486 aa0.36□□□□□ -2.35
VPS50-213ENST00000477572 TRIOO75962 3097 aa0.36□□□□□ -2.35
VPS50-213ENST00000477572 ACACBO00763 2458 aa0.36□□□□□ -2.35
VPS50-213ENST00000477572 A0A096LNI7 61 aa0.36□□□□□ -2.35
VPS50-213ENST00000477572 PRM1P04553 51 aa0.36□□□□□ -2.35
VPS50-213ENST00000477572 TNP1P09430 55 aa0.36□□□□□ -2.35
VPS50-213ENST00000477572 DEFB136Q30KP8 78 aa0.36□□□□□ -2.35
VPS50-213ENST00000477572 SPINK6Q6UWN8 80 aa0.36□□□□□ -2.35
VPS50-213ENST00000477572 FAT3Q8TDW7 4589 aa0.36□□□□□ -2.35
VPS50-213ENST00000477572 CACNA1AO00555 2505 aa0.36□□□□□ -2.35
VPS50-213ENST00000477572 TLN2Q9Y4G6 2542 aa0.36□□□□□ -2.35
VPS50-213ENST00000477572 MKI67P46013 3256 aaKnown RBP0.36□□□□□ -2.35
VPS50-213ENST00000477572 CMYA5Q8N3K9 4069 aa0.36□□□□□ -2.35
VPS50-213ENST00000477572 USP9XQ93008 2570 aaPredicted RBP0.36□□□□□ -2.35
VPS50-213ENST00000477572 FLNBO75369 2602 aaKnown RBP0.35□□□□□ -2.35
VPS50-213ENST00000477572 APOBP04114 4563 aaKnown RBP0.35□□□□□ -2.35
VPS50-213ENST00000477572 DNAH1Q9P2D7 4330 aa0.35□□□□□ -2.35
VPS50-213ENST00000477572 SONP18583 2426 aaKnown RBP0.35□□□□□ -2.35
VPS50-213ENST00000477572 MYO18BQ8IUG5 2567 aa0.35□□□□□ -2.35
VPS50-213ENST00000477572 HRNRQ86YZ3 2850 aaPredicted RBP0.35□□□□□ -2.35
VPS50-213ENST00000477572 H3BNG1 76 aa0.35□□□□□ -2.35
VPS50-213ENST00000477572 HTN1P15515 57 aa0.35□□□□□ -2.35
VPS50-213ENST00000477572 KRTAP21-1Q3LI58 79 aa0.35□□□□□ -2.35
VPS50-213ENST00000477572 TEP1Q99973 2627 aaKnown RBP0.35□□□□□ -2.35
VPS50-213ENST00000477572 SVEP1Q4LDE5 3571 aa0.35□□□□□ -2.35
VPS50-213ENST00000477572 BOD1L1Q8NFC6 3051 aa0.35□□□□□ -2.35
VPS50-213ENST00000477572 DNAH10Q8IVF4 4471 aa0.34□□□□□ -2.35
VPS50-213ENST00000477572 ADGRG4Q8IZF6 3080 aa0.34□□□□□ -2.35
VPS50-213ENST00000477572 FASNP49327 2511 aaKnown RBP0.34□□□□□ -2.35
VPS50-213ENST00000477572 MAP1AP78559 2803 aaPredicted RBP0.34□□□□□ -2.35
VPS50-213ENST00000477572 LRP1Q07954 4544 aaKnown RBP0.34□□□□□ -2.35
VPS50-213ENST00000477572 PLECQ15149 4684 aaKnown RBP0.34□□□□□ -2.35
VPS50-213ENST00000477572 DEFB110Q30KQ9 67 aa0.34□□□□□ -2.36
VPS50-213ENST00000477572 DOPEY1Q5JWR5 2465 aa0.34□□□□□ -2.36
VPS50-213ENST00000477572 LAMA3Q16787 3333 aa0.34□□□□□ -2.36
VPS50-213ENST00000477572 CFAP46Q8IYW2 2715 aa0.34□□□□□ -2.36
VPS50-213ENST00000477572 MAST4O15021 2626 aa0.34□□□□□ -2.36
VPS50-213ENST00000477572 CEP350Q5VT06 3117 aa0.33□□□□□ -2.36
VPS50-213ENST00000477572 C9orf92A6NGG3 77 aa0.33□□□□□ -2.36
VPS50-213ENST00000477572 H3BUX3 64 aa0.33□□□□□ -2.36
VPS50-213ENST00000477572 SPART-AS1P0CW21 52 aa0.33□□□□□ -2.36
VPS50-213ENST00000477572 RHPN1-AS1Q9BWJ2 59 aa0.33□□□□□ -2.36
VPS50-213ENST00000477572 U3KQA8 63 aa0.33□□□□□ -2.36
VPS50-213ENST00000477572 NIPBLQ6KC79 2804 aaeCLIP0.33□□□□□ -2.36
VPS50-213ENST00000477572 ITPR2Q14571 2701 aa0.33□□□□□ -2.36
VPS50-213ENST00000477572 DCHS1Q96JQ0 3298 aa0.33□□□□□ -2.36
VPS50-213ENST00000477572 CSMD2Q7Z408 3487 aa0.33□□□□□ -2.36
VPS50-213ENST00000477572 MUC3AQ02505 3323 aa0.33□□□□□ -2.36
VPS50-213ENST00000477572 FLNAP21333 2647 aaKnown RBP0.33□□□□□ -2.36
VPS50-213ENST00000477572 DNAH5Q8TE73 4624 aa0.33□□□□□ -2.36
VPS50-213ENST00000477572 SPTAN1Q13813 2472 aaKnown RBP0.32□□□□□ -2.36
VPS50-213ENST00000477572 TGP01266 2768 aa0.32□□□□□ -2.36
VPS50-213ENST00000477572 TEX15Q9BXT5 2789 aa0.32□□□□□ -2.36
VPS50-213ENST00000477572 LPAP08519 4548 aa0.32□□□□□ -2.36
VPS50-213ENST00000477572 FAT1Q14517 4588 aa0.32□□□□□ -2.36
VPS50-213ENST00000477572 FREM2Q5SZK8 3169 aa0.32□□□□□ -2.36
VPS50-213ENST00000477572 DNAH17Q9UFH2 4485 aa0.32□□□□□ -2.36
VPS50-213ENST00000477572 CFAP47Q6ZTR5 3102 aa0.31□□□□□ -2.36
VPS50-213ENST00000477572 XIRP2A4UGR9 3374 aa0.31□□□□□ -2.36
VPS50-213ENST00000477572 LAMA1P25391 3075 aa0.31□□□□□ -2.36
VPS50-213ENST00000477572 MGAM2Q2M2H8 2515 aa0.3□□□□□ -2.36
VPS50-213ENST00000477572 WDFY4Q6ZS81 3184 aa0.3□□□□□ -2.36
VPS50-213ENST00000477572 IGSF10Q6WRI0 2623 aa0.3□□□□□ -2.36
VPS50-213ENST00000477572 KRTAP8-1Q8IUC2 63 aa0.3□□□□□ -2.36
VPS50-213ENST00000477572 DEFB108BQ8NET1 73 aa0.3□□□□□ -2.36
VPS50-213ENST00000477572 COX14Q96I36 57 aa0.3□□□□□ -2.36
VPS50-213ENST00000477572 NBEAL1Q6ZS30 2694 aa0.3□□□□□ -2.36
VPS50-213ENST00000477572 SYNE1Q8NF91 8797 aaKnown RBP0.29□□□□□ -2.36
VPS50-213ENST00000477572 USP34Q70CQ2 3546 aa0.29□□□□□ -2.36
VPS50-213ENST00000477572 A0A096LPF7 62 aa0.29□□□□□ -2.36
VPS50-213ENST00000477572 SMR3BP02814 79 aaPredicted RBP0.29□□□□□ -2.36
VPS50-213ENST00000477572 DEFB124Q8NES8 71 aa0.29□□□□□ -2.36
VPS50-213ENST00000477572 LRP1BQ9NZR2 4599 aa0.29□□□□□ -2.36
VPS50-213ENST00000477572 ASPMQ8IZT6 3477 aa0.29□□□□□ -2.36
VPS50-213ENST00000477572 MYO15AQ9UKN7 3530 aa0.29□□□□□ -2.36
VPS50-213ENST00000477572 UTRNP46939 3433 aa0.28□□□□□ -2.36
VPS50-213ENST00000477572 CEP295Q9C0D2 2601 aa0.28□□□□□ -2.36
VPS50-213ENST00000477572 CENPEQ02224 2701 aa0.28□□□□□ -2.36
VPS50-213ENST00000477572 TLN1Q9Y490 2541 aaKnown RBP0.28□□□□□ -2.36
VPS50-213ENST00000477572 DYNC1H1Q14204 4646 aaKnown RBP0.27□□□□□ -2.37
VPS50-213ENST00000477572 SPRR2DP22532 72 aa0.27□□□□□ -2.37
VPS50-213ENST00000477572 KRTAP6-2Q3LI66 62 aa0.27□□□□□ -2.37
VPS50-213ENST00000477572 KRTAP19-5Q3LI72 72 aa0.27□□□□□ -2.37
VPS50-213ENST00000477572 VPS13AQ96RL7 3174 aa0.27□□□□□ -2.37
VPS50-213ENST00000477572 AHNAKQ09666 5890 aaKnown RBP0.27□□□□□ -2.37
VPS50-213ENST00000477572 LAMA2P24043 3122 aaKnown RBP0.27□□□□□ -2.37
VPS50-213ENST00000477572 MUC17Q685J3 4493 aa0.26□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms