RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 COX7CP15954 63 aa3.63□□□□□ -1.83
USP54-211ENST00000474929 RBM3P98179 157 aaKnown RBP3.63□□□□□ -1.83
USP54-211ENST00000474929 KRTAP19-8Q3LI54 63 aa3.63□□□□□ -1.83
USP54-211ENST00000474929 KRTAP8-1Q8IUC2 63 aa3.63□□□□□ -1.83
USP54-211ENST00000474929 KRTAP16-1A8MUX0 517 aa3.62□□□□□ -1.83
USP54-211ENST00000474929 RPS28P62857 69 aaKnown RBP3.62□□□□□ -1.83
USP54-211ENST00000474929 CXCL6P80162 114 aa3.62□□□□□ -1.83
USP54-211ENST00000474929 SERP2Q8N6R1 65 aa3.62□□□□□ -1.83
USP54-211ENST00000474929 C14orf132Q9NPU4 83 aa3.62□□□□□ -1.83
USP54-211ENST00000474929 Q6ZQT0 140 aa3.61□□□□□ -1.83
USP54-211ENST00000474929 DSCR8Q96T75 97 aa3.61□□□□□ -1.83
USP54-211ENST00000474929 CCDC179H3BU77 68 aa3.6□□□□□ -1.83
USP54-211ENST00000474929 HMCN1Q96RW7 5635 aa3.6□□□□□ -1.83
USP54-211ENST00000474929 TRBV7-4A0A0J9YYF1 115 aa3.59□□□□□ -1.83
USP54-211ENST00000474929 TMEM258P61165 79 aa3.59□□□□□ -1.83
USP54-211ENST00000474929 DEFB116Q30KQ4 102 aa3.59□□□□□ -1.83
USP54-211ENST00000474929 MUC5BQ9HC84 5762 aaPredicted RBP3.58□□□□□ -1.84
USP54-211ENST00000474929 IGKV4-1P06312 121 aa3.57□□□□□ -1.84
USP54-211ENST00000474929 DSCR10P59022 87 aa3.57□□□□□ -1.84
USP54-211ENST00000474929 SPRR2GQ9BYE4 73 aa3.57□□□□□ -1.84
USP54-211ENST00000474929 NDUFC1O43677 76 aa3.56□□□□□ -1.84
USP54-211ENST00000474929 KRTAP5-7Q6L8G8 165 aa3.56□□□□□ -1.84
USP54-211ENST00000474929 TRAV7A0A075B6U4 112 aa3.55□□□□□ -1.84
USP54-211ENST00000474929 J3KT08 172 aa3.55□□□□□ -1.84
USP54-211ENST00000474929 LINC00313P59037 77 aa3.55□□□□□ -1.84
USP54-211ENST00000474929 ATP5EP56381 51 aaPredicted RBP3.54□□□□□ -1.84
USP54-211ENST00000474929 SPINK7P58062 85 aa3.54□□□□□ -1.84
USP54-211ENST00000474929 KLKP1Q107X0 134 aa3.54□□□□□ -1.84
USP54-211ENST00000474929 Q6ZVQ6 151 aa3.54□□□□□ -1.84
USP54-211ENST00000474929 WFDC13Q8IUB5 93 aa3.54□□□□□ -1.84
USP54-211ENST00000474929 LINC00472Q9H8W2 130 aa3.54□□□□□ -1.84
USP54-211ENST00000474929 IGHV6-1A0A0B4J1U7 121 aa3.53□□□□□ -1.84
USP54-211ENST00000474929 IGKV3D-7A0A0C4DH55 119 aa3.53□□□□□ -1.84
USP54-211ENST00000474929 KRTAP5-10Q6L8G5 202 aa3.53□□□□□ -1.84
USP54-211ENST00000474929 PRO2289Q9P1D8 64 aa3.52□□□□□ -1.85
USP54-211ENST00000474929 H3BS24 57 aa3.51□□□□□ -1.85
USP54-211ENST00000474929 H1FX-AS1Q4G0G2 97 aa3.51□□□□□ -1.85
USP54-211ENST00000474929 NREPQ16612 68 aa3.5□□□□□ -1.85
USP54-211ENST00000474929 A0A087WVE0 104 aa3.49□□□□□ -1.85
USP54-211ENST00000474929 A0A1B0GVX0 72 aa3.49□□□□□ -1.85
USP54-211ENST00000474929 NDUFB1O75438 58 aa3.48□□□□□ -1.85
USP54-211ENST00000474929 C5orf47Q569G3 176 aa3.48□□□□□ -1.85
USP54-211ENST00000474929 ZCCHC13Q8WW36 166 aaKnown RBP3.48□□□□□ -1.85
USP54-211ENST00000474929 BPY2O14599 106 aa3.47□□□□□ -1.85
USP54-211ENST00000474929 C8orf87E5RJ46 101 aa3.46□□□□□ -1.86
USP54-211ENST00000474929 H7BZZ5 65 aa3.46□□□□□ -1.86
USP54-211ENST00000474929 SERP1Q9Y6X1 66 aa3.46□□□□□ -1.86
USP54-211ENST00000474929 C20orf197Q8N268 126 aa3.45□□□□□ -1.86
USP54-211ENST00000474929 KRTAP12-2P59991 146 aa3.44□□□□□ -1.86
USP54-211ENST00000474929 OCR1Q9BZK8 76 aa3.44□□□□□ -1.86
USP54-211ENST00000474929 C8orf17Q9NRJ1 99 aa3.44□□□□□ -1.86
USP54-211ENST00000474929 H3BPC8 53 aa3.43□□□□□ -1.86
USP54-211ENST00000474929 SEC61GP60059 68 aa3.43□□□□□ -1.86
USP54-211ENST00000474929 TMEM254Q8TBM7 123 aa3.43□□□□□ -1.86
USP54-211ENST00000474929 SMIM26A0A096LP01 95 aa3.42□□□□□ -1.86
USP54-211ENST00000474929 PRR15Q8IV56 129 aa3.42□□□□□ -1.86
USP54-211ENST00000474929 K7EQZ3 153 aa3.4□□□□□ -1.87
USP54-211ENST00000474929 CYSTM1Q9H1C7 97 aa3.4□□□□□ -1.87
USP54-211ENST00000474929 NDUFS5O43920 106 aa3.39□□□□□ -1.87
USP54-211ENST00000474929 Q8N9L7 120 aa3.39□□□□□ -1.87
USP54-211ENST00000474929 MMP24-AS1A0A0U1RRL7 71 aa3.38□□□□□ -1.87
USP54-211ENST00000474929 hDV103S1A0JD37 113 aa3.38□□□□□ -1.87
USP54-211ENST00000474929 HCG22E2RYF7 251 aa3.38□□□□□ -1.87
USP54-211ENST00000474929 MRPL34Q9BQ48 92 aaKnown RBP3.38□□□□□ -1.87
USP54-211ENST00000474929 CRIPTQ9P021 101 aa3.38□□□□□ -1.87
USP54-211ENST00000474929 CYP4F30PQ9H0H9 118 aa3.37□□□□□ -1.87
USP54-211ENST00000474929 MP68P56378 58 aa3.36□□□□□ -1.87
USP54-211ENST00000474929 SPANXA2-OT1Q8N9U9 137 aa3.36□□□□□ -1.87
USP54-211ENST00000474929 TP53AIP1Q9HCN2 124 aa3.35□□□□□ -1.87
USP54-211ENST00000474929 SNURFQ9Y675 71 aa3.35□□□□□ -1.87
USP54-211ENST00000474929 CASC2Q6XLA1 102 aa3.34□□□□□ -1.87
USP54-211ENST00000474929 V9GYY9 64 aa3.34□□□□□ -1.87
USP54-211ENST00000474929 Q5W150 140 aa3.33□□□□□ -1.88
USP54-211ENST00000474929 IGKV2D-30A0A075B6S6 120 aa3.32□□□□□ -1.88
USP54-211ENST00000474929 IGKV2-30P06310 120 aa3.32□□□□□ -1.88
USP54-211ENST00000474929 MT4P47944 62 aa3.32□□□□□ -1.88
USP54-211ENST00000474929 C4orf26Q17RF5 130 aa3.32□□□□□ -1.88
USP54-211ENST00000474929 PRO0628Q9UI54 55 aa3.32□□□□□ -1.88
USP54-211ENST00000474929 A0A0A0MQY5 61 aa3.31□□□□□ -1.88
USP54-211ENST00000474929 Q1T7F1 81 aa3.31□□□□□ -1.88
USP54-211ENST00000474929 CSAG1Q6PB30 78 aa3.31□□□□□ -1.88
USP54-211ENST00000474929 MT1XP80297 61 aa3.3□□□□□ -1.88
USP54-211ENST00000474929 TRAV22A0A0B4J277 110 aa3.29□□□□□ -1.88
USP54-211ENST00000474929 LCA10Q71F78 164 aa3.29□□□□□ -1.88
USP54-211ENST00000474929 H0Y9P7 68 aa3.26□□□□□ -1.89
USP54-211ENST00000474929 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.26□□□□□ -1.89
USP54-211ENST00000474929 C7orf65Q6ZTY9 151 aa3.26□□□□□ -1.89
USP54-211ENST00000474929 C1orf64Q8NEQ6 169 aa3.26□□□□□ -1.89
USP54-211ENST00000474929 LINC00208Q96KT6 92 aa3.25□□□□□ -1.89
USP54-211ENST00000474929 PLAC4Q8WY50 150 aa3.24□□□□□ -1.89
USP54-211ENST00000474929 S4R3F8 94 aa3.24□□□□□ -1.89
USP54-211ENST00000474929 LOC101927531A0A1B0GV80 90 aa3.23□□□□□ -1.89
USP54-211ENST00000474929 MUC5ACP98088 5654 aa3.22□□□□□ -1.89
USP54-211ENST00000474929 KRTAP3-1Q9BYR8 98 aa3.19□□□□□ -1.9
USP54-211ENST00000474929 A8MUN3 132 aa3.17□□□□□ -1.9
USP54-211ENST00000474929 KRTAP10-12P60413 245 aa3.17□□□□□ -1.9
USP54-211ENST00000474929 BRK1Q8WUW1 75 aa3.17□□□□□ -1.9
USP54-211ENST00000474929 LINC01558Q9Y6Z2 57 aa3.16□□□□□ -1.9
USP54-211ENST00000474929 ACYP2P14621 99 aa3.15□□□□□ -1.91
USP54-211ENST00000474929 COA5Q86WW8 74 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms