RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 DMBT1Q9UGM3 2413 aaPredicted RBP11.09□□□□□ -0.63
COL18A1-207ENST00000473212 RYR3Q15413 4870 aa11.07□□□□□ -0.64
COL18A1-207ENST00000473212 KRTAP25-1Q3LHN0 102 aa10.96□□□□□ -0.65
COL18A1-207ENST00000473212 K7ERS5 55 aa10.9□□□□□ -0.66
COL18A1-207ENST00000473212 KRTAP17-1Q9BYP8 105 aa10.9□□□□□ -0.67
COL18A1-207ENST00000473212 KRTAP10-8P60410 259 aa10.88□□□□□ -0.67
COL18A1-207ENST00000473212 KRTAP3-3Q9BYR6 98 aa10.86□□□□□ -0.67
COL18A1-207ENST00000473212 CRIPTQ9P021 101 aa10.85□□□□□ -0.67
COL18A1-207ENST00000473212 Q5VSD8 79 aa10.84□□□□□ -0.67
COL18A1-207ENST00000473212 KRTAP10-6P60371 365 aaPredicted RBP10.84□□□□□ -0.67
COL18A1-207ENST00000473212 LPAP08519 4548 aa10.82□□□□□ -0.68
COL18A1-207ENST00000473212 RPL37P61927 97 aaKnown RBP10.79□□□□□ -0.68
COL18A1-207ENST00000473212 XP32Q5T750 250 aa10.79□□□□□ -0.68
COL18A1-207ENST00000473212 KRTAP13-4Q3LI77 160 aa10.78□□□□□ -0.68
COL18A1-207ENST00000473212 RYR1P21817 5038 aa10.77□□□□□ -0.69
COL18A1-207ENST00000473212 KIAA1109Q2LD37 5005 aa10.76□□□□□ -0.69
COL18A1-207ENST00000473212 A0A0D9SG42 100 aa10.74□□□□□ -0.69
COL18A1-207ENST00000473212 KRTAP3-2Q9BYR7 98 aa10.74□□□□□ -0.69
COL18A1-207ENST00000473212 S4R3F8 94 aa10.72□□□□□ -0.69
COL18A1-207ENST00000473212 H3BS24 57 aa10.71□□□□□ -0.69
COL18A1-207ENST00000473212 ROMO1P60602 79 aa10.71□□□□□ -0.7
COL18A1-207ENST00000473212 EPPK1P58107 5090 aaKnown RBP10.68□□□□□ -0.7
COL18A1-207ENST00000473212 LRP2P98164 4655 aa10.67□□□□□ -0.7
COL18A1-207ENST00000473212 P0C880 135 aa10.62□□□□□ -0.71
COL18A1-207ENST00000473212 MT1HL1P0DM35 61 aa10.59□□□□□ -0.71
COL18A1-207ENST00000473212 TPRXLQ17RH7 258 aa10.48□□□□□ -0.73
COL18A1-207ENST00000473212 ABCA13Q86UQ4 5058 aa10.46□□□□□ -0.74
COL18A1-207ENST00000473212 KRTAP12-2P59991 146 aa10.44□□□□□ -0.74
COL18A1-207ENST00000473212 C10orf95Q9H7T3 257 aa10.42□□□□□ -0.74
COL18A1-207ENST00000473212 SPINT4Q6UDR6 99 aa10.35□□□□□ -0.75
COL18A1-207ENST00000473212 KRTAP12-1P59990 96 aa10.34□□□□□ -0.75
COL18A1-207ENST00000473212 KRTAP4-5Q9BYR2 181 aa10.28□□□□□ -0.76
COL18A1-207ENST00000473212 M0QZ58 72 aa10.21□□□□□ -0.78
COL18A1-207ENST00000473212 MUC17Q685J3 4493 aa10.07□□□□□ -0.8
COL18A1-207ENST00000473212 KRTAP15-1Q3LI76 137 aa10.04□□□□□ -0.8
COL18A1-207ENST00000473212 KRTAP4-1Q9BYQ7 146 aa10□□□□□ -0.81
COL18A1-207ENST00000473212 HERC2O95714 4834 aa10□□□□□ -0.81
COL18A1-207ENST00000473212 LORP23490 312 aaPredicted RBP9.97□□□□□ -0.81
COL18A1-207ENST00000473212 R4GN34 69 aa9.97□□□□□ -0.81
COL18A1-207ENST00000473212 MUC2Q02817 5179 aa9.91□□□□□ -0.82
COL18A1-207ENST00000473212 NDUFAF8A1L188 74 aa9.89□□□□□ -0.83
COL18A1-207ENST00000473212 J3QL48 77 aa9.85□□□□□ -0.83
COL18A1-207ENST00000473212 BIRC6Q9NR09 4857 aa9.84□□□□□ -0.83
COL18A1-207ENST00000473212 SEC61BP60468 96 aaKnown RBP9.81□□□□□ -0.84
COL18A1-207ENST00000473212 KRTAP19-2Q3LHN2 52 aa9.73□□□□□ -0.85
COL18A1-207ENST00000473212 PCLOQ9Y6V0 5065 aa9.68□□□□□ -0.86
COL18A1-207ENST00000473212 HERC1Q15751 4861 aa9.64□□□□□ -0.87
COL18A1-207ENST00000473212 PLAC4Q8WY50 150 aa9.53□□□□□ -0.88
COL18A1-207ENST00000473212 FLGP20930 4061 aaPredicted RBP9.51□□□□□ -0.89
COL18A1-207ENST00000473212 CAMK2N1Q7Z7J9 78 aa9.5□□□□□ -0.89
COL18A1-207ENST00000473212 FAT4Q6V0I7 4981 aa9.42□□□□□ -0.9
COL18A1-207ENST00000473212 HMCN2Q8NDA2 5059 aa9.41□□□□□ -0.9
COL18A1-207ENST00000473212 PP632Q6XCG6 107 aa9.36□□□□□ -0.91
COL18A1-207ENST00000473212 TNP1P09430 55 aa9.13□□□□□ -0.95
COL18A1-207ENST00000473212 RNF213Q63HN8 5207 aa9.13□□□□□ -0.95
COL18A1-207ENST00000473212 LCE2CQ5TA81 110 aa9.13□□□□□ -0.95
COL18A1-207ENST00000473212 UBR4Q5T4S7 5183 aa9.13□□□□□ -0.95
COL18A1-207ENST00000473212 LUZP6Q538Z0 58 aa9.12□□□□□ -0.95
COL18A1-207ENST00000473212 KRTAP23-1A1A580 65 aa8.98□□□□□ -0.97
COL18A1-207ENST00000473212 A0A0A0MQY5 61 aa8.96□□□□□ -0.98
COL18A1-207ENST00000473212 KRTAP19-1Q8IUB9 90 aa8.95□□□□□ -0.98
COL18A1-207ENST00000473212 M0R2T5 61 aa8.9□□□□□ -0.98
COL18A1-207ENST00000473212 SPRR2GQ9BYE4 73 aa8.88□□□□□ -0.99
COL18A1-207ENST00000473212 MT1HP80294 61 aa8.85□□□□□ -0.99
COL18A1-207ENST00000473212 SPRR5A0A1B0GTR4 108 aa8.81□□□□□ -1
COL18A1-207ENST00000473212 MT1FP04733 61 aa8.79□□□□□ -1
COL18A1-207ENST00000473212 MT2AP02795 61 aa8.74□□□□□ -1.01
COL18A1-207ENST00000473212 KRTAP10-10P60014 251 aa8.73□□□□□ -1.01
COL18A1-207ENST00000473212 LCE3AQ5TA76 89 aa8.67□□□□□ -1.02
COL18A1-207ENST00000473212 KRTAP9-8Q9BYQ0 159 aa8.66□□□□□ -1.02
COL18A1-207ENST00000473212 MT1BP07438 61 aa8.48□□□□□ -1.05
COL18A1-207ENST00000473212 KRTAP19-8Q3LI54 63 aa8.45□□□□□ -1.06
COL18A1-207ENST00000473212 KRTAP10-5P60370 271 aa8.44□□□□□ -1.06
COL18A1-207ENST00000473212 MT1XP80297 61 aa8.43□□□□□ -1.06
COL18A1-207ENST00000473212 KRTAP8-1Q8IUC2 63 aa8.4□□□□□ -1.06
COL18A1-207ENST00000473212 KRTAP9-3Q9BYQ3 159 aa8.28□□□□□ -1.08
COL18A1-207ENST00000473212 KRTAP10-7P60409 375 aaPredicted RBP8.27□□□□□ -1.09
COL18A1-207ENST00000473212 KRTAP10-12P60413 245 aa8.25□□□□□ -1.09
COL18A1-207ENST00000473212 KRTAP12-3P60328 96 aa8.23□□□□□ -1.09
COL18A1-207ENST00000473212 USH2AO75445 5202 aa8.21□□□□□ -1.1
COL18A1-207ENST00000473212 KMT2DO14686 5537 aa8.11□□□□□ -1.11
COL18A1-207ENST00000473212 LCE2BO14633 110 aa8.02□□□□□ -1.12
COL18A1-207ENST00000473212 LCE2AQ5TA79 106 aaPredicted RBP7.97□□□□□ -1.13
COL18A1-207ENST00000473212 PRO2289Q9P1D8 64 aa7.97□□□□□ -1.13
COL18A1-207ENST00000473212 KRTAP19-5Q3LI72 72 aa7.89□□□□□ -1.15
COL18A1-207ENST00000473212 INE1O15225 51 aa7.87□□□□□ -1.15
COL18A1-207ENST00000473212 KRTAP4-8A0A0G2JLE6 195 aa7.83□□□□□ -1.16
COL18A1-207ENST00000473212 KRTAP4-8Q9BYQ9 185 aa7.83□□□□□ -1.16
COL18A1-207ENST00000473212 LCE3CQ5T5A8 94 aa7.75□□□□□ -1.17
COL18A1-207ENST00000473212 KRTAP9-6A8MVA2 160 aa7.58□□□□□ -1.2
COL18A1-207ENST00000473212 KRTAP4-7Q9BYR0 210 aa7.56□□□□□ -1.2
COL18A1-207ENST00000473212 FSIP2Q5CZC0 6907 aa7.55□□□□□ -1.2
COL18A1-207ENST00000473212 KRTAP19-7Q3SYF9 63 aa7.52□□□□□ -1.21
COL18A1-207ENST00000473212 SSPOA2VEC9 5147 aa7.42□□□□□ -1.22
COL18A1-207ENST00000473212 KRTAP2-3P0C7H8 128 aa7.27□□□□□ -1.25
COL18A1-207ENST00000473212 KRTAP2-4Q9BYR9 128 aa7.27□□□□□ -1.25
COL18A1-207ENST00000473212 KRTAP2-1Q9BYU5 128 aa7.27□□□□□ -1.25
COL18A1-207ENST00000473212 MT1LQ93083 61 aa7.27□□□□□ -1.25
COL18A1-207ENST00000473212 MT1EP04732 61 aa7.26□□□□□ -1.25
COL18A1-207ENST00000473212 KRTAP19-4Q3LI73 84 aa7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms