RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 KRTAP19-8Q3LI54 63 aa8.86□□□□□ -0.99
COL9A3-210ENST00000472880 LOC101927531A0A1B0GV80 90 aa8.84□□□□□ -0.99
COL9A3-210ENST00000472880 UQCRQO14949 82 aa8.84□□□□□ -0.99
COL9A3-210ENST00000472880 KLKP1Q107X0 134 aa8.81□□□□□ -1
COL9A3-210ENST00000472880 H0Y9P7 68 aa8.79□□□□□ -1
COL9A3-210ENST00000472880 J3QR89 54 aa8.78□□□□□ -1
COL9A3-210ENST00000472880 ATOX1O00244 68 aa8.78□□□□□ -1
COL9A3-210ENST00000472880 KRTAP10-5P60370 271 aa8.77□□□□□ -1.01
COL9A3-210ENST00000472880 NEBP20929 6669 aa8.75□□□□□ -1.01
COL9A3-210ENST00000472880 KRTAP3-3Q9BYR6 98 aa8.73□□□□□ -1.01
COL9A3-210ENST00000472880 MUC12Q9UKN1 5478 aa8.72□□□□□ -1.01
COL9A3-210ENST00000472880 OCR1Q9BZK8 76 aa8.7□□□□□ -1.02
COL9A3-210ENST00000472880 IMUPQ9GZP8 106 aa8.67□□□□□ -1.02
COL9A3-210ENST00000472880 CRIPTQ9P021 101 aa8.67□□□□□ -1.02
COL9A3-210ENST00000472880 LINC00208Q96KT6 92 aa8.66□□□□□ -1.02
COL9A3-210ENST00000472880 MP68P56378 58 aa8.63□□□□□ -1.03
COL9A3-210ENST00000472880 KRTAP5-9P26371 169 aa8.6□□□□□ -1.03
COL9A3-210ENST00000472880 KRTAP20-1Q3LI63 56 aa8.59□□□□□ -1.03
COL9A3-210ENST00000472880 A8MUN3 132 aa8.56□□□□□ -1.04
COL9A3-210ENST00000472880 SCGB1A1P11684 91 aa8.55□□□□□ -1.04
COL9A3-210ENST00000472880 H3BPC8 53 aa8.53□□□□□ -1.04
COL9A3-210ENST00000472880 NDUFC1O43677 76 aa8.53□□□□□ -1.04
COL9A3-210ENST00000472880 H0YAA0 97 aa8.51□□□□□ -1.05
COL9A3-210ENST00000472880 K7ERU9 68 aa8.51□□□□□ -1.05
COL9A3-210ENST00000472880 KMT2DO14686 5537 aa8.49□□□□□ -1.05
COL9A3-210ENST00000472880 MT-ATP8P03928 68 aa8.48□□□□□ -1.05
COL9A3-210ENST00000472880 MDN1Q9NU22 5596 aa8.45□□□□□ -1.06
COL9A3-210ENST00000472880 ADM2Q7Z4H4 148 aa8.43□□□□□ -1.06
COL9A3-210ENST00000472880 PRO2289Q9P1D8 64 aa8.39□□□□□ -1.07
COL9A3-210ENST00000472880 DMAC1Q96GE9 116 aa8.37□□□□□ -1.07
COL9A3-210ENST00000472880 SMIM20Q8N5G0 67 aa8.35□□□□□ -1.07
COL9A3-210ENST00000472880 TRAV7A0A075B6U4 112 aa8.34□□□□□ -1.07
COL9A3-210ENST00000472880 SPRR2FQ96RM1 72 aa8.33□□□□□ -1.08
COL9A3-210ENST00000472880 PLAC4Q8WY50 150 aa8.31□□□□□ -1.08
COL9A3-210ENST00000472880 MT1XP80297 61 aa8.3□□□□□ -1.08
COL9A3-210ENST00000472880 KRTAP2-3P0C7H8 128 aa8.28□□□□□ -1.08
COL9A3-210ENST00000472880 KRTAP2-4Q9BYR9 128 aa8.28□□□□□ -1.08
COL9A3-210ENST00000472880 SPRR2EP22531 72 aa8.26□□□□□ -1.09
COL9A3-210ENST00000472880 SPRR2BP35325 72 aa8.26□□□□□ -1.09
COL9A3-210ENST00000472880 SPRR2AP35326 72 aa8.26□□□□□ -1.09
COL9A3-210ENST00000472880 R4GN34 69 aa8.25□□□□□ -1.09
COL9A3-210ENST00000472880 KRTAP8-1Q8IUC2 63 aa8.22□□□□□ -1.09
COL9A3-210ENST00000472880 C20orf197Q8N268 126 aa8.22□□□□□ -1.09
COL9A3-210ENST00000472880 ACYP2P14621 99 aa8.18□□□□□ -1.1
COL9A3-210ENST00000472880 M0QZ58 72 aa8.17□□□□□ -1.1
COL9A3-210ENST00000472880 P0C880 135 aa8.17□□□□□ -1.1
COL9A3-210ENST00000472880 KRTAP12-2P59991 146 aa8.16□□□□□ -1.1
COL9A3-210ENST00000472880 SNURFQ9Y675 71 aa8.16□□□□□ -1.1
COL9A3-210ENST00000472880 KRTAP3-2Q9BYR7 98 aa8.11□□□□□ -1.11
COL9A3-210ENST00000472880 SERP2Q8N6R1 65 aa8.1□□□□□ -1.11
COL9A3-210ENST00000472880 LCE1AQ5T7P2 110 aa8.09□□□□□ -1.11
COL9A3-210ENST00000472880 LINC01554Q52M75 96 aa8.07□□□□□ -1.12
COL9A3-210ENST00000472880 SPTSSBQ8NFR3 76 aa8.06□□□□□ -1.12
COL9A3-210ENST00000472880 SPANXA2-OT1Q8N9U9 137 aa8.04□□□□□ -1.12
COL9A3-210ENST00000472880 CHKB-CPT1BH3BT56 60 aa8.03□□□□□ -1.12
COL9A3-210ENST00000472880 KRTAP4-8A0A0G2JLE6 195 aa8.01□□□□□ -1.13
COL9A3-210ENST00000472880 KRTAP4-8Q9BYQ9 185 aa8.01□□□□□ -1.13
COL9A3-210ENST00000472880 KRTAP2-2Q9BYT5 123 aa8□□□□□ -1.13
COL9A3-210ENST00000472880 KRTAP2-1Q9BYU5 128 aa8□□□□□ -1.13
COL9A3-210ENST00000472880 SPRR2DP22532 72 aa7.99□□□□□ -1.13
COL9A3-210ENST00000472880 KRTAP10-7P60409 375 aaPredicted RBP7.92□□□□□ -1.14
COL9A3-210ENST00000472880 COX7CP15954 63 aa7.89□□□□□ -1.15
COL9A3-210ENST00000472880 KRTAP10-12P60413 245 aa7.88□□□□□ -1.15
COL9A3-210ENST00000472880 COA5Q86WW8 74 aa7.81□□□□□ -1.16
COL9A3-210ENST00000472880 LCE3BQ5TA77 95 aa7.78□□□□□ -1.16
COL9A3-210ENST00000472880 H7BZZ5 65 aa7.76□□□□□ -1.17
COL9A3-210ENST00000472880 CYSTM1Q9H1C7 97 aa7.76□□□□□ -1.17
COL9A3-210ENST00000472880 KRTAP13-4Q3LI77 160 aa7.69□□□□□ -1.18
COL9A3-210ENST00000472880 ANAPC13Q9BS18 74 aa7.67□□□□□ -1.18
COL9A3-210ENST00000472880 SEC61GP60059 68 aa7.61□□□□□ -1.19
COL9A3-210ENST00000472880 SERP1Q9Y6X1 66 aa7.6□□□□□ -1.19
COL9A3-210ENST00000472880 CAMK2N1Q7Z7J9 78 aa7.56□□□□□ -1.2
COL9A3-210ENST00000472880 CCDC179H3BU77 68 aa7.52□□□□□ -1.21
COL9A3-210ENST00000472880 A0A1B0GU33 70 aa7.47□□□□□ -1.21
COL9A3-210ENST00000472880 SPATA8Q6RVD6 105 aa7.46□□□□□ -1.22
COL9A3-210ENST00000472880 A0A0D9SG42 100 aa7.45□□□□□ -1.22
COL9A3-210ENST00000472880 KRTAP19-7Q3SYF9 63 aa7.42□□□□□ -1.22
COL9A3-210ENST00000472880 LCE5AQ5TCM9 118 aa7.41□□□□□ -1.22
COL9A3-210ENST00000472880 A0A1B0GU69 56 aa7.4□□□□□ -1.22
COL9A3-210ENST00000472880 ATP5EP56381 51 aaPredicted RBP7.4□□□□□ -1.22
COL9A3-210ENST00000472880 MT1EP04732 61 aa7.38□□□□□ -1.23
COL9A3-210ENST00000472880 KRTAP19-3Q7Z4W3 81 aa7.38□□□□□ -1.23
COL9A3-210ENST00000472880 DSTQ03001 7570 aaKnown RBP7.35□□□□□ -1.23
COL9A3-210ENST00000472880 SPINT4Q6UDR6 99 aa7.33□□□□□ -1.24
COL9A3-210ENST00000472880 KRTAP12-1P59990 96 aa7.31□□□□□ -1.24
COL9A3-210ENST00000472880 KRTAP4-9Q9BYQ8 210 aa7.29□□□□□ -1.24
COL9A3-210ENST00000472880 GPR98Q8WXG9 6306 aa7.28□□□□□ -1.24
COL9A3-210ENST00000472880 SMIM26A0A096LP01 95 aa7.26□□□□□ -1.25
COL9A3-210ENST00000472880 TMEM258P61165 79 aa7.25□□□□□ -1.25
COL9A3-210ENST00000472880 A8MU10 97 aa7.21□□□□□ -1.26
COL9A3-210ENST00000472880 PRR15LQ9BU68 103 aa7.21□□□□□ -1.26
COL9A3-210ENST00000472880 LINC01558Q9Y6Z2 57 aa7.19□□□□□ -1.26
COL9A3-210ENST00000472880 KRTAP19-5Q3LI72 72 aa7.18□□□□□ -1.26
COL9A3-210ENST00000472880 MT1GP13640 62 aa7.17□□□□□ -1.26
COL9A3-210ENST00000472880 PP632Q6XCG6 107 aa7.15□□□□□ -1.26
COL9A3-210ENST00000472880 LCE1DQ5T752 114 aa7.1□□□□□ -1.27
COL9A3-210ENST00000472880 MT1MQ8N339 61 aa7.05□□□□□ -1.28
COL9A3-210ENST00000472880 LCE4AQ5TA78 99 aa7.03□□□□□ -1.28
COL9A3-210ENST00000472880 MT1LQ93083 61 aa7.01□□□□□ -1.29
COL9A3-210ENST00000472880 MT4P47944 62 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms