RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 F8W1H4 67 aa7.34□□□□□ -1.23
CCDC28B-204ENST00000469003 ETDBQ3ZM63 59 aa7.33□□□□□ -1.24
CCDC28B-204ENST00000469003 TRAV22A0A0B4J277 110 aa7.3□□□□□ -1.24
CCDC28B-204ENST00000469003 A0A087WVE0 104 aa7.29□□□□□ -1.24
CCDC28B-204ENST00000469003 LOC101927531A0A1B0GV80 90 aa7.29□□□□□ -1.24
CCDC28B-204ENST00000469003 PCP4L1A6NKN8 68 aa7.29□□□□□ -1.24
CCDC28B-204ENST00000469003 CRIPTQ9P021 101 aa7.29□□□□□ -1.24
CCDC28B-204ENST00000469003 MDN1Q9NU22 5596 aa7.25□□□□□ -1.25
CCDC28B-204ENST00000469003 IMUPQ9GZP8 106 aa7.24□□□□□ -1.25
CCDC28B-204ENST00000469003 KMT2DO14686 5537 aa7.24□□□□□ -1.25
CCDC28B-204ENST00000469003 KRTAP5-9P26371 169 aa7.23□□□□□ -1.25
CCDC28B-204ENST00000469003 KRTAP2-3P0C7H8 128 aa7.21□□□□□ -1.26
CCDC28B-204ENST00000469003 KRTAP2-4Q9BYR9 128 aa7.21□□□□□ -1.26
CCDC28B-204ENST00000469003 ACYP1P07311 99 aa7.2□□□□□ -1.26
CCDC28B-204ENST00000469003 KRTAP4-8Q9BYQ9 185 aa7.2□□□□□ -1.26
CCDC28B-204ENST00000469003 UQCRQO14949 82 aa7.19□□□□□ -1.26
CCDC28B-204ENST00000469003 NDUFC1O43677 76 aa7.18□□□□□ -1.26
CCDC28B-204ENST00000469003 ATP5EP2Q5VTU8 51 aa7.18□□□□□ -1.26
CCDC28B-204ENST00000469003 H0YAA0 97 aa7.17□□□□□ -1.26
CCDC28B-204ENST00000469003 ATOX1O00244 68 aa7.17□□□□□ -1.26
CCDC28B-204ENST00000469003 H0Y9P7 68 aa7.16□□□□□ -1.26
CCDC28B-204ENST00000469003 FAM240AA0A1B0GVK7 77 aa7.15□□□□□ -1.26
CCDC28B-204ENST00000469003 HIST1H4AP62805 103 aaKnown RBP7.15□□□□□ -1.26
CCDC28B-204ENST00000469003 A8MUN3 132 aa7.11□□□□□ -1.27
CCDC28B-204ENST00000469003 ADM2Q7Z4H4 148 aa7.07□□□□□ -1.28
CCDC28B-204ENST00000469003 PCP4P48539 62 aa7.03□□□□□ -1.28
CCDC28B-204ENST00000469003 LINC00208Q96KT6 92 aa7.03□□□□□ -1.28
CCDC28B-204ENST00000469003 LINC00643Q86TS7 51 aa7.01□□□□□ -1.29
CCDC28B-204ENST00000469003 PRO2289Q9P1D8 64 aa7□□□□□ -1.29
CCDC28B-204ENST00000469003 SPRR2EP22531 72 aa6.98□□□□□ -1.29
CCDC28B-204ENST00000469003 SPRR2BP35325 72 aa6.98□□□□□ -1.29
CCDC28B-204ENST00000469003 SPRR2AP35326 72 aa6.98□□□□□ -1.29
CCDC28B-204ENST00000469003 MP68P56378 58 aa6.97□□□□□ -1.29
CCDC28B-204ENST00000469003 MT1XP80297 61 aa6.97□□□□□ -1.29
CCDC28B-204ENST00000469003 OCR1Q9BZK8 76 aa6.96□□□□□ -1.3
CCDC28B-204ENST00000469003 A0A1B0GV90 55 aa6.95□□□□□ -1.3
CCDC28B-204ENST00000469003 PLAC4Q8WY50 150 aa6.95□□□□□ -1.3
CCDC28B-204ENST00000469003 SPRR2FQ96RM1 72 aa6.94□□□□□ -1.3
CCDC28B-204ENST00000469003 KRTAP2-2Q9BYT5 123 aa6.94□□□□□ -1.3
CCDC28B-204ENST00000469003 KRTAP2-1Q9BYU5 128 aa6.94□□□□□ -1.3
CCDC28B-204ENST00000469003 R4GN34 69 aa6.92□□□□□ -1.3
CCDC28B-204ENST00000469003 P0C880 135 aa6.89□□□□□ -1.31
CCDC28B-204ENST00000469003 C20orf197Q8N268 126 aa6.89□□□□□ -1.31
CCDC28B-204ENST00000469003 H3BPC8 53 aa6.86□□□□□ -1.31
CCDC28B-204ENST00000469003 M0QZ58 72 aa6.85□□□□□ -1.31
CCDC28B-204ENST00000469003 KRTAP12-2P59991 146 aa6.85□□□□□ -1.31
CCDC28B-204ENST00000469003 DMAC1Q96GE9 116 aa6.85□□□□□ -1.31
CCDC28B-204ENST00000469003 KRTAP8-1Q8IUC2 63 aa6.84□□□□□ -1.31
CCDC28B-204ENST00000469003 LCE3BQ5TA77 95 aa6.81□□□□□ -1.32
CCDC28B-204ENST00000469003 GPR98Q8WXG9 6306 aa6.78□□□□□ -1.32
CCDC28B-204ENST00000469003 SPRR2DP22532 72 aa6.76□□□□□ -1.33
CCDC28B-204ENST00000469003 LCE1AQ5T7P2 110 aa6.76□□□□□ -1.33
CCDC28B-204ENST00000469003 LINC01554Q52M75 96 aa6.75□□□□□ -1.33
CCDC28B-204ENST00000469003 KRTAP4-12Q9BQ66 201 aa6.75□□□□□ -1.33
CCDC28B-204ENST00000469003 KRTAP9-9Q9BYP9 154 aa6.75□□□□□ -1.33
CCDC28B-204ENST00000469003 KRTAP9-4Q9BYQ2 154 aa6.75□□□□□ -1.33
CCDC28B-204ENST00000469003 SCGB1A1P11684 91 aa6.74□□□□□ -1.33
CCDC28B-204ENST00000469003 KRTAP4-8A0A0G2JLE6 195 aa6.71□□□□□ -1.34
CCDC28B-204ENST00000469003 TRAV7A0A075B6U4 112 aa6.7□□□□□ -1.34
CCDC28B-204ENST00000469003 J3QR89 54 aa6.7□□□□□ -1.34
CCDC28B-204ENST00000469003 ACYP2P14621 99 aa6.65□□□□□ -1.34
CCDC28B-204ENST00000469003 KRTAP10-7P60409 375 aaPredicted RBP6.64□□□□□ -1.35
CCDC28B-204ENST00000469003 KRTAP10-12P60413 245 aa6.62□□□□□ -1.35
CCDC28B-204ENST00000469003 SPTSSBQ8NFR3 76 aa6.61□□□□□ -1.35
CCDC28B-204ENST00000469003 MT-ATP8P03928 68 aa6.59□□□□□ -1.35
CCDC28B-204ENST00000469003 K7ERU9 68 aa6.54□□□□□ -1.36
CCDC28B-204ENST00000469003 SMIM20Q8N5G0 67 aa6.53□□□□□ -1.36
CCDC28B-204ENST00000469003 CHKB-CPT1BH3BT56 60 aa6.51□□□□□ -1.37
CCDC28B-204ENST00000469003 KRTAP4-7Q9BYR0 210 aa6.46□□□□□ -1.38
CCDC28B-204ENST00000469003 DSTQ03001 7570 aaKnown RBP6.44□□□□□ -1.38
CCDC28B-204ENST00000469003 SNURFQ9Y675 71 aa6.4□□□□□ -1.38
CCDC28B-204ENST00000469003 KRTAP13-4Q3LI77 160 aa6.37□□□□□ -1.39
CCDC28B-204ENST00000469003 SPANXA2-OT1Q8N9U9 137 aa6.37□□□□□ -1.39
CCDC28B-204ENST00000469003 LCE1DQ5T752 114 aa6.35□□□□□ -1.39
CCDC28B-204ENST00000469003 H3BS24 57 aa6.34□□□□□ -1.39
CCDC28B-204ENST00000469003 CAMK2N1Q7Z7J9 78 aa6.33□□□□□ -1.4
CCDC28B-204ENST00000469003 KRTAP4-9Q9BYQ8 210 aa6.3□□□□□ -1.4
CCDC28B-204ENST00000469003 SERP2Q8N6R1 65 aa6.24□□□□□ -1.41
CCDC28B-204ENST00000469003 KRTAP19-7Q3SYF9 63 aa6.23□□□□□ -1.41
CCDC28B-204ENST00000469003 KRTAP4-2Q9BYR5 136 aa6.22□□□□□ -1.41
CCDC28B-204ENST00000469003 LCE5AQ5TCM9 118 aa6.21□□□□□ -1.42
CCDC28B-204ENST00000469003 MT1EP04732 61 aa6.19□□□□□ -1.42
CCDC28B-204ENST00000469003 COA5Q86WW8 74 aa6.19□□□□□ -1.42
CCDC28B-204ENST00000469003 KRTAP19-3Q7Z4W3 81 aa6.17□□□□□ -1.42
CCDC28B-204ENST00000469003 A0A0D9SG42 100 aa6.15□□□□□ -1.42
CCDC28B-204ENST00000469003 SEC61GP60059 68 aa6.15□□□□□ -1.42
CCDC28B-204ENST00000469003 SERP1Q9Y6X1 66 aa6.15□□□□□ -1.42
CCDC28B-204ENST00000469003 ANAPC13Q9BS18 74 aa6.12□□□□□ -1.43
CCDC28B-204ENST00000469003 SPATA8Q6RVD6 105 aa6.1□□□□□ -1.43
CCDC28B-204ENST00000469003 A0A1B0GU33 70 aa6.07□□□□□ -1.44
CCDC28B-204ENST00000469003 SPINT4Q6UDR6 99 aa6.07□□□□□ -1.44
CCDC28B-204ENST00000469003 KRTAP12-1P59990 96 aa6.03□□□□□ -1.44
CCDC28B-204ENST00000469003 KRTAP19-5Q3LI72 72 aa6.03□□□□□ -1.44
CCDC28B-204ENST00000469003 CYSTM1Q9H1C7 97 aa6.03□□□□□ -1.44
CCDC28B-204ENST00000469003 HMCN1Q96RW7 5635 aa6.02□□□□□ -1.45
CCDC28B-204ENST00000469003 MT1GP13640 62 aa6.02□□□□□ -1.45
CCDC28B-204ENST00000469003 AHNAK2Q8IVF2 5795 aa6.01□□□□□ -1.45
CCDC28B-204ENST00000469003 COX7CP15954 63 aa5.99□□□□□ -1.45
CCDC28B-204ENST00000469003 PP632Q6XCG6 107 aa5.97□□□□□ -1.45
CCDC28B-204ENST00000469003 MT4P47944 62 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 187.3 ms