RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 KRTAP12-1P59990 96 aa4.15□□□□□ -1.74
HPS4-209ENST00000466781 HECTD4Q9Y4D8 3996 aa4.14□□□□□ -1.75
HPS4-209ENST00000466781 VPS13DQ5THJ4 4388 aa4.13□□□□□ -1.75
HPS4-209ENST00000466781 FBN3Q75N90 2809 aa4.13□□□□□ -1.75
HPS4-209ENST00000466781 PLECQ15149 4684 aaKnown RBP4.13□□□□□ -1.75
HPS4-209ENST00000466781 HYDINQ4G0P3 5121 aa4.13□□□□□ -1.75
HPS4-209ENST00000466781 KRTAP4-5Q9BYR2 181 aa4.12□□□□□ -1.75
HPS4-209ENST00000466781 MT1HL1P0DM35 61 aa4.12□□□□□ -1.75
HPS4-209ENST00000466781 TENM3Q9P273 2699 aa4.08□□□□□ -1.76
HPS4-209ENST00000466781 FAT2Q9NYQ8 4349 aa4.08□□□□□ -1.76
HPS4-209ENST00000466781 PKD1P98161 4303 aa4.08□□□□□ -1.76
HPS4-209ENST00000466781 DNAH6Q9C0G6 4158 aa4.08□□□□□ -1.76
HPS4-209ENST00000466781 MEGF8Q7Z7M0 2845 aa4.07□□□□□ -1.76
HPS4-209ENST00000466781 CRCT1Q9UGL9 99 aa4.05□□□□□ -1.76
HPS4-209ENST00000466781 KRTAP3-1Q9BYR8 98 aa4.03□□□□□ -1.76
HPS4-209ENST00000466781 KRTAP10-4P60372 401 aaPredicted RBP4.02□□□□□ -1.77
HPS4-209ENST00000466781 DNAH11Q96DT5 4516 aa4□□□□□ -1.77
HPS4-209ENST00000466781 PKHD1P08F94 4074 aa3.99□□□□□ -1.77
HPS4-209ENST00000466781 DNAH8Q96JB1 4490 aa3.98□□□□□ -1.77
HPS4-209ENST00000466781 KRTAP10-12P60413 245 aa3.98□□□□□ -1.77
HPS4-209ENST00000466781 TGP01266 2768 aa3.97□□□□□ -1.77
HPS4-209ENST00000466781 KMT2CQ8NEZ4 4911 aaKnown RBP3.96□□□□□ -1.78
HPS4-209ENST00000466781 SACSQ9NZJ4 4579 aa3.96□□□□□ -1.78
HPS4-209ENST00000466781 VPS13BQ7Z7G8 4022 aa3.95□□□□□ -1.78
HPS4-209ENST00000466781 DNAH17Q9UFH2 4485 aa3.95□□□□□ -1.78
HPS4-209ENST00000466781 DNAH5Q8TE73 4624 aa3.94□□□□□ -1.78
HPS4-209ENST00000466781 INE1O15225 51 aa3.92□□□□□ -1.78
HPS4-209ENST00000466781 KRTAP10-6P60371 365 aaPredicted RBP3.91□□□□□ -1.78
HPS4-209ENST00000466781 RYR3Q15413 4870 aa3.91□□□□□ -1.78
HPS4-209ENST00000466781 KRTAP12-3P60328 96 aa3.81□□□□□ -1.8
HPS4-209ENST00000466781 RYR2Q92736 4967 aa3.79□□□□□ -1.8
HPS4-209ENST00000466781 KRTAP3-3Q9BYR6 98 aa3.78□□□□□ -1.8
HPS4-209ENST00000466781 LCE3AQ5TA76 89 aa3.76□□□□□ -1.81
HPS4-209ENST00000466781 PKHD1L1Q86WI1 4243 aa3.75□□□□□ -1.81
HPS4-209ENST00000466781 KRTAP8-1Q8IUC2 63 aa3.74□□□□□ -1.81
HPS4-209ENST00000466781 KRTAP3-2Q9BYR7 98 aa3.74□□□□□ -1.81
HPS4-209ENST00000466781 LRP1BQ9NZR2 4599 aa3.73□□□□□ -1.81
HPS4-209ENST00000466781 FAT3Q8TDW7 4589 aa3.72□□□□□ -1.81
HPS4-209ENST00000466781 KRTAP23-1A1A580 65 aa3.71□□□□□ -1.82
HPS4-209ENST00000466781 APOBP04114 4563 aaKnown RBP3.71□□□□□ -1.82
HPS4-209ENST00000466781 EPPK1P58107 5090 aaKnown RBP3.7□□□□□ -1.82
HPS4-209ENST00000466781 KRTAP10-5P60370 271 aa3.69□□□□□ -1.82
HPS4-209ENST00000466781 LORP23490 312 aaPredicted RBP3.69□□□□□ -1.82
HPS4-209ENST00000466781 HSPG2P98160 4391 aa3.66□□□□□ -1.82
HPS4-209ENST00000466781 MT1HP80294 61 aa3.65□□□□□ -1.82
HPS4-209ENST00000466781 SRRM2Q9UQ35 2752 aaKnown RBP3.65□□□□□ -1.83
HPS4-209ENST00000466781 DYNC1H1Q14204 4646 aaKnown RBP3.64□□□□□ -1.83
HPS4-209ENST00000466781 KRTAP4-1Q9BYQ7 146 aa3.64□□□□□ -1.83
HPS4-209ENST00000466781 TNXBP22105 4242 aa3.63□□□□□ -1.83
HPS4-209ENST00000466781 MYCBP2O75592 4640 aa3.6□□□□□ -1.83
HPS4-209ENST00000466781 FAT1Q14517 4588 aa3.57□□□□□ -1.84
HPS4-209ENST00000466781 LRP1Q07954 4544 aaKnown RBP3.52□□□□□ -1.85
HPS4-209ENST00000466781 LPAP08519 4548 aa3.52□□□□□ -1.85
HPS4-209ENST00000466781 ABCA13Q86UQ4 5058 aa3.51□□□□□ -1.85
HPS4-209ENST00000466781 MT2AP02795 61 aa3.51□□□□□ -1.85
HPS4-209ENST00000466781 KRTAP17-1Q9BYP8 105 aa3.5□□□□□ -1.85
HPS4-209ENST00000466781 KRTAP10-7P60409 375 aaPredicted RBP3.48□□□□□ -1.85
HPS4-209ENST00000466781 SPRR2FQ96RM1 72 aa3.45□□□□□ -1.86
HPS4-209ENST00000466781 RYR1P21817 5038 aa3.44□□□□□ -1.86
HPS4-209ENST00000466781 MT1FP04733 61 aa3.43□□□□□ -1.86
HPS4-209ENST00000466781 PCLOQ9Y6V0 5065 aa3.41□□□□□ -1.86
HPS4-209ENST00000466781 SPRR2GQ9BYE4 73 aa3.4□□□□□ -1.86
HPS4-209ENST00000466781 KIAA1109Q2LD37 5005 aa3.4□□□□□ -1.86
HPS4-209ENST00000466781 KRTAP19-5Q3LI72 72 aa3.35□□□□□ -1.87
HPS4-209ENST00000466781 SPRR2EP22531 72 aa3.31□□□□□ -1.88
HPS4-209ENST00000466781 SPRR2BP35325 72 aa3.31□□□□□ -1.88
HPS4-209ENST00000466781 SPRR2AP35326 72 aa3.31□□□□□ -1.88
HPS4-209ENST00000466781 HERC2O95714 4834 aa3.31□□□□□ -1.88
HPS4-209ENST00000466781 LCE3CQ5T5A8 94 aa3.3□□□□□ -1.88
HPS4-209ENST00000466781 HERC1Q15751 4861 aa3.29□□□□□ -1.88
HPS4-209ENST00000466781 MUC2Q02817 5179 aa3.27□□□□□ -1.89
HPS4-209ENST00000466781 KRTAP9-6A0A140TA67 174 aa3.25□□□□□ -1.89
HPS4-209ENST00000466781 MUC17Q685J3 4493 aa3.24□□□□□ -1.89
HPS4-209ENST00000466781 KRTAP19-4Q3LI73 84 aa3.23□□□□□ -1.89
HPS4-209ENST00000466781 BIRC6Q9NR09 4857 aa3.22□□□□□ -1.89
HPS4-209ENST00000466781 LRP2P98164 4655 aa3.22□□□□□ -1.89
HPS4-209ENST00000466781 SPRR2DP22532 72 aa3.21□□□□□ -1.89
HPS4-209ENST00000466781 KRTAP19-8Q3LI54 63 aa3.19□□□□□ -1.9
HPS4-209ENST00000466781 FLGP20930 4061 aaPredicted RBP3.18□□□□□ -1.9
HPS4-209ENST00000466781 LCE3BQ5TA77 95 aa3.16□□□□□ -1.9
HPS4-209ENST00000466781 KRTAP19-1Q8IUB9 90 aa3.16□□□□□ -1.9
HPS4-209ENST00000466781 LCE2BO14633 110 aa3.16□□□□□ -1.9
HPS4-209ENST00000466781 KRTAP9-8Q9BYQ0 159 aa3.16□□□□□ -1.9
HPS4-209ENST00000466781 HMCN2Q8NDA2 5059 aa3.14□□□□□ -1.91
HPS4-209ENST00000466781 LCE2CQ5TA81 110 aa3.13□□□□□ -1.91
HPS4-209ENST00000466781 KRTAP12-4P60329 112 aa3.12□□□□□ -1.91
HPS4-209ENST00000466781 KRTAP9-2Q9BYQ4 174 aa3.11□□□□□ -1.91
HPS4-209ENST00000466781 KRTAP9-3Q9BYQ3 159 aa3.11□□□□□ -1.91
HPS4-209ENST00000466781 MT1BP07438 61 aa3.08□□□□□ -1.92
HPS4-209ENST00000466781 MT1XP80297 61 aa3.08□□□□□ -1.92
HPS4-209ENST00000466781 MT1GP13640 62 aa3.08□□□□□ -1.92
HPS4-209ENST00000466781 UBR4Q5T4S7 5183 aa3.06□□□□□ -1.92
HPS4-209ENST00000466781 KRTAP4-8A0A0G2JLE6 195 aa3.04□□□□□ -1.92
HPS4-209ENST00000466781 KRTAP4-8Q9BYQ9 185 aa3.04□□□□□ -1.92
HPS4-209ENST00000466781 RNF213Q63HN8 5207 aa3.04□□□□□ -1.92
HPS4-209ENST00000466781 FAT4Q6V0I7 4981 aa3.04□□□□□ -1.92
HPS4-209ENST00000466781 LCE2DQ5TA82 110 aaPredicted RBP2.99□□□□□ -1.93
HPS4-209ENST00000466781 LCE3DQ9BYE3 92 aa2.95□□□□□ -1.94
HPS4-209ENST00000466781 KRTAP19-2Q3LHN2 52 aa2.95□□□□□ -1.94
HPS4-209ENST00000466781 KRTAP9-7A8MTY7 169 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 148 ms