RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 NDUFC1O43677 76 aa7.76□□□□□ -1.17
COL7A1-206ENST00000466591 H0Y9P7 68 aa7.75□□□□□ -1.17
COL7A1-206ENST00000466591 ATOX1O00244 68 aa7.75□□□□□ -1.17
COL7A1-206ENST00000466591 ATP5EP2Q5VTU8 51 aa7.75□□□□□ -1.17
COL7A1-206ENST00000466591 KRTAP3-3Q9BYR6 98 aa7.75□□□□□ -1.17
COL7A1-206ENST00000466591 UQCRQO14949 82 aa7.74□□□□□ -1.17
COL7A1-206ENST00000466591 KRTAP10-5P60370 271 aa7.73□□□□□ -1.17
COL7A1-206ENST00000466591 A0A087WVE0 104 aa7.72□□□□□ -1.17
COL7A1-206ENST00000466591 FAM240AA0A1B0GVK7 77 aa7.66□□□□□ -1.18
COL7A1-206ENST00000466591 A8MUN3 132 aa7.64□□□□□ -1.19
COL7A1-206ENST00000466591 ADM2Q7Z4H4 148 aa7.61□□□□□ -1.19
COL7A1-206ENST00000466591 LINC00208Q96KT6 92 aa7.61□□□□□ -1.19
COL7A1-206ENST00000466591 H0YAA0 97 aa7.6□□□□□ -1.19
COL7A1-206ENST00000466591 MP68P56378 58 aa7.6□□□□□ -1.19
COL7A1-206ENST00000466591 NEBP20929 6669 aa7.58□□□□□ -1.2
COL7A1-206ENST00000466591 MUC12Q9UKN1 5478 aa7.57□□□□□ -1.2
COL7A1-206ENST00000466591 LINC00643Q86TS7 51 aa7.56□□□□□ -1.2
COL7A1-206ENST00000466591 PRO2289Q9P1D8 64 aa7.54□□□□□ -1.2
COL7A1-206ENST00000466591 KRTAP20-1Q3LI63 56 aa7.52□□□□□ -1.21
COL7A1-206ENST00000466591 PLAC4Q8WY50 150 aa7.52□□□□□ -1.21
COL7A1-206ENST00000466591 C20orf197Q8N268 126 aa7.49□□□□□ -1.21
COL7A1-206ENST00000466591 KRTAP5-9P26371 169 aa7.48□□□□□ -1.21
COL7A1-206ENST00000466591 R4GN34 69 aa7.48□□□□□ -1.21
COL7A1-206ENST00000466591 OCR1Q9BZK8 76 aa7.42□□□□□ -1.22
COL7A1-206ENST00000466591 SCGB1A1P11684 91 aa7.41□□□□□ -1.22
COL7A1-206ENST00000466591 M0QZ58 72 aa7.39□□□□□ -1.23
COL7A1-206ENST00000466591 H3BPC8 53 aa7.38□□□□□ -1.23
COL7A1-206ENST00000466591 SPRR2FQ96RM1 72 aa7.38□□□□□ -1.23
COL7A1-206ENST00000466591 KMT2DO14686 5537 aa7.36□□□□□ -1.23
COL7A1-206ENST00000466591 J3QR89 54 aa7.35□□□□□ -1.23
COL7A1-206ENST00000466591 LINC01554Q52M75 96 aa7.35□□□□□ -1.23
COL7A1-206ENST00000466591 P0C880 135 aa7.33□□□□□ -1.24
COL7A1-206ENST00000466591 MDN1Q9NU22 5596 aa7.32□□□□□ -1.24
COL7A1-206ENST00000466591 MT1XP80297 61 aa7.32□□□□□ -1.24
COL7A1-206ENST00000466591 DMAC1Q96GE9 116 aa7.32□□□□□ -1.24
COL7A1-206ENST00000466591 KRTAP8-1Q8IUC2 63 aa7.31□□□□□ -1.24
COL7A1-206ENST00000466591 SPRR2EP22531 72 aa7.3□□□□□ -1.24
COL7A1-206ENST00000466591 SPRR2BP35325 72 aa7.3□□□□□ -1.24
COL7A1-206ENST00000466591 SPRR2AP35326 72 aa7.3□□□□□ -1.24
COL7A1-206ENST00000466591 A0A1B0GV90 55 aa7.28□□□□□ -1.24
COL7A1-206ENST00000466591 KRTAP2-3P0C7H8 128 aa7.26□□□□□ -1.25
COL7A1-206ENST00000466591 KRTAP2-4Q9BYR9 128 aa7.26□□□□□ -1.25
COL7A1-206ENST00000466591 MT-ATP8P03928 68 aa7.22□□□□□ -1.25
COL7A1-206ENST00000466591 SPTSSBQ8NFR3 76 aa7.22□□□□□ -1.25
COL7A1-206ENST00000466591 TRAV7A0A075B6U4 112 aa7.2□□□□□ -1.26
COL7A1-206ENST00000466591 ACYP2P14621 99 aa7.2□□□□□ -1.26
COL7A1-206ENST00000466591 KRTAP12-2P59991 146 aa7.19□□□□□ -1.26
COL7A1-206ENST00000466591 CHKB-CPT1BH3BT56 60 aa7.16□□□□□ -1.26
COL7A1-206ENST00000466591 KRTAP3-2Q9BYR7 98 aa7.16□□□□□ -1.26
COL7A1-206ENST00000466591 SMIM20Q8N5G0 67 aa7.09□□□□□ -1.27
COL7A1-206ENST00000466591 LCE1AQ5T7P2 110 aa7.08□□□□□ -1.28
COL7A1-206ENST00000466591 KRTAP4-8A0A0G2JLE6 195 aa7.07□□□□□ -1.28
COL7A1-206ENST00000466591 SPRR2DP22532 72 aa7.07□□□□□ -1.28
COL7A1-206ENST00000466591 KRTAP4-8Q9BYQ9 185 aa7.07□□□□□ -1.28
COL7A1-206ENST00000466591 KRTAP2-2Q9BYT5 123 aa7.02□□□□□ -1.29
COL7A1-206ENST00000466591 KRTAP2-1Q9BYU5 128 aa7.02□□□□□ -1.29
COL7A1-206ENST00000466591 KRTAP10-7P60409 375 aaPredicted RBP7□□□□□ -1.29
COL7A1-206ENST00000466591 KRTAP10-12P60413 245 aa6.95□□□□□ -1.3
COL7A1-206ENST00000466591 SNURFQ9Y675 71 aa6.95□□□□□ -1.3
COL7A1-206ENST00000466591 K7ERU9 68 aa6.94□□□□□ -1.3
COL7A1-206ENST00000466591 CAMK2N1Q7Z7J9 78 aa6.91□□□□□ -1.3
COL7A1-206ENST00000466591 LCE3BQ5TA77 95 aa6.86□□□□□ -1.31
COL7A1-206ENST00000466591 SPANXA2-OT1Q8N9U9 137 aa6.84□□□□□ -1.31
COL7A1-206ENST00000466591 SEC61GP60059 68 aa6.79□□□□□ -1.32
COL7A1-206ENST00000466591 KRTAP13-4Q3LI77 160 aa6.75□□□□□ -1.33
COL7A1-206ENST00000466591 SERP1Q9Y6X1 66 aa6.75□□□□□ -1.33
COL7A1-206ENST00000466591 SERP2Q8N6R1 65 aa6.74□□□□□ -1.33
COL7A1-206ENST00000466591 A0A0D9SG42 100 aa6.7□□□□□ -1.34
COL7A1-206ENST00000466591 COA5Q86WW8 74 aa6.69□□□□□ -1.34
COL7A1-206ENST00000466591 SPINT4Q6UDR6 99 aa6.63□□□□□ -1.35
COL7A1-206ENST00000466591 SPATA8Q6RVD6 105 aa6.58□□□□□ -1.36
COL7A1-206ENST00000466591 A0A1B0GU33 70 aa6.57□□□□□ -1.36
COL7A1-206ENST00000466591 KRTAP19-7Q3SYF9 63 aa6.52□□□□□ -1.37
COL7A1-206ENST00000466591 KRTAP19-3Q7Z4W3 81 aa6.52□□□□□ -1.37
COL7A1-206ENST00000466591 MT1EP04732 61 aa6.51□□□□□ -1.37
COL7A1-206ENST00000466591 LCE5AQ5TCM9 118 aa6.5□□□□□ -1.37
COL7A1-206ENST00000466591 COX7CP15954 63 aa6.48□□□□□ -1.37
COL7A1-206ENST00000466591 A0A1B0GU69 56 aa6.44□□□□□ -1.38
COL7A1-206ENST00000466591 CYSTM1Q9H1C7 97 aa6.44□□□□□ -1.38
COL7A1-206ENST00000466591 SMIM26A0A096LP01 95 aa6.43□□□□□ -1.38
COL7A1-206ENST00000466591 KRTAP12-1P59990 96 aa6.42□□□□□ -1.38
COL7A1-206ENST00000466591 PP632Q6XCG6 107 aa6.41□□□□□ -1.38
COL7A1-206ENST00000466591 KRTAP4-9Q9BYQ8 210 aa6.41□□□□□ -1.38
COL7A1-206ENST00000466591 KRTAP19-5Q3LI72 72 aa6.4□□□□□ -1.38
COL7A1-206ENST00000466591 DSTQ03001 7570 aaKnown RBP6.39□□□□□ -1.39
COL7A1-206ENST00000466591 H7BZZ5 65 aa6.38□□□□□ -1.39
COL7A1-206ENST00000466591 MT1GP13640 62 aa6.35□□□□□ -1.39
COL7A1-206ENST00000466591 A8MU10 97 aa6.29□□□□□ -1.4
COL7A1-206ENST00000466591 TNP1P09430 55 aa6.28□□□□□ -1.4
COL7A1-206ENST00000466591 GPR98Q8WXG9 6306 aa6.28□□□□□ -1.4
COL7A1-206ENST00000466591 PRR15LQ9BU68 103 aa6.25□□□□□ -1.41
COL7A1-206ENST00000466591 ANAPC13Q9BS18 74 aa6.23□□□□□ -1.41
COL7A1-206ENST00000466591 MT1MQ8N339 61 aa6.22□□□□□ -1.41
COL7A1-206ENST00000466591 LCE1DQ5T752 114 aa6.21□□□□□ -1.42
COL7A1-206ENST00000466591 C10orf95Q9H7T3 257 aa6.21□□□□□ -1.42
COL7A1-206ENST00000466591 MT4P47944 62 aa6.2□□□□□ -1.42
COL7A1-206ENST00000466591 LCE3AQ5TA76 89 aa6.2□□□□□ -1.42
COL7A1-206ENST00000466591 MT1LQ93083 61 aa6.2□□□□□ -1.42
COL7A1-206ENST00000466591 LCE4AQ5TA78 99 aa6.19□□□□□ -1.42
COL7A1-206ENST00000466591 ATP5EP56381 51 aaPredicted RBP6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms