RNA–Protein interactions for RNA: ENST00000463440.1

COL1A1-202, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 614 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-202ENST00000463440 MP68P56378 58 aa7.35□□□□□ -1.23
COL1A1-202ENST00000463440 KLKP1Q107X0 134 aa7.34□□□□□ -1.23
COL1A1-202ENST00000463440 OCR1Q9BZK8 76 aa7.34□□□□□ -1.23
COL1A1-202ENST00000463440 A8MUN3 132 aa7.32□□□□□ -1.24
COL1A1-202ENST00000463440 NDUFC1O43677 76 aa7.32□□□□□ -1.24
COL1A1-202ENST00000463440 SPRR2GQ9BYE4 73 aa7.32□□□□□ -1.24
COL1A1-202ENST00000463440 Q5VV11 94 aa7.29□□□□□ -1.24
COL1A1-202ENST00000463440 IMUPQ9GZP8 106 aa7.29□□□□□ -1.24
COL1A1-202ENST00000463440 KRTAP19-8Q3LI54 63 aa7.26□□□□□ -1.25
COL1A1-202ENST00000463440 CRIPTQ9P021 101 aa7.26□□□□□ -1.25
COL1A1-202ENST00000463440 H3BPC8 53 aa7.25□□□□□ -1.25
COL1A1-202ENST00000463440 MT1BP07438 61 aa7.25□□□□□ -1.25
COL1A1-202ENST00000463440 SCGB1A1P11684 91 aa7.25□□□□□ -1.25
COL1A1-202ENST00000463440 MACF1Q9UPN3 7388 aaKnown RBP7.25□□□□□ -1.25
COL1A1-202ENST00000463440 H0YAA0 97 aa7.22□□□□□ -1.25
COL1A1-202ENST00000463440 A6NN06 94 aa7.18□□□□□ -1.26
COL1A1-202ENST00000463440 ADM2Q7Z4H4 148 aa7.14□□□□□ -1.27
COL1A1-202ENST00000463440 K7ERU9 68 aa7.12□□□□□ -1.27
COL1A1-202ENST00000463440 DMAC1Q96GE9 116 aa7.11□□□□□ -1.27
COL1A1-202ENST00000463440 SYNE2Q8WXH0 6885 aaKnown RBP7.11□□□□□ -1.27
COL1A1-202ENST00000463440 MT-ATP8P03928 68 aa7.09□□□□□ -1.27
COL1A1-202ENST00000463440 KRTAP10-5P60370 271 aa7.09□□□□□ -1.27
COL1A1-202ENST00000463440 KRTAP6-3Q3LI67 103 aa7.08□□□□□ -1.28
COL1A1-202ENST00000463440 SMIM20Q8N5G0 67 aa7.07□□□□□ -1.28
COL1A1-202ENST00000463440 TRAV7A0A075B6U4 112 aa7.04□□□□□ -1.28
COL1A1-202ENST00000463440 C20orf197Q8N268 126 aa7.02□□□□□ -1.29
COL1A1-202ENST00000463440 ACYP2P14621 99 aa6.98□□□□□ -1.29
COL1A1-202ENST00000463440 R4GN34 69 aa6.98□□□□□ -1.29
COL1A1-202ENST00000463440 P0C880 135 aa6.97□□□□□ -1.29
COL1A1-202ENST00000463440 PLAC4Q8WY50 150 aa6.92□□□□□ -1.3
COL1A1-202ENST00000463440 M0QZ58 72 aa6.91□□□□□ -1.3
COL1A1-202ENST00000463440 SPTSSBQ8NFR3 76 aa6.91□□□□□ -1.3
COL1A1-202ENST00000463440 KRTAP3-2Q9BYR7 98 aa6.9□□□□□ -1.3
COL1A1-202ENST00000463440 PRO2289Q9P1D8 64 aa6.89□□□□□ -1.31
COL1A1-202ENST00000463440 SNURFQ9Y675 71 aa6.87□□□□□ -1.31
COL1A1-202ENST00000463440 CHKB-CPT1BH3BT56 60 aa6.86□□□□□ -1.31
COL1A1-202ENST00000463440 SERP2Q8N6R1 65 aa6.82□□□□□ -1.32
COL1A1-202ENST00000463440 MT1XP80297 61 aa6.81□□□□□ -1.32
COL1A1-202ENST00000463440 LINC01554Q52M75 96 aa6.81□□□□□ -1.32
COL1A1-202ENST00000463440 SPANXA2-OT1Q8N9U9 137 aa6.8□□□□□ -1.32
COL1A1-202ENST00000463440 KRTAP5-9P26371 169 aa6.77□□□□□ -1.33
COL1A1-202ENST00000463440 NEBP20929 6669 aa6.7□□□□□ -1.34
COL1A1-202ENST00000463440 MUC12Q9UKN1 5478 aa6.7□□□□□ -1.34
COL1A1-202ENST00000463440 KRTAP12-2P59991 146 aa6.65□□□□□ -1.34
COL1A1-202ENST00000463440 KMT2DO14686 5537 aa6.63□□□□□ -1.35
COL1A1-202ENST00000463440 COX7CP15954 63 aa6.61□□□□□ -1.35
COL1A1-202ENST00000463440 COA5Q86WW8 74 aa6.6□□□□□ -1.35
COL1A1-202ENST00000463440 KRTAP8-1Q8IUC2 63 aa6.6□□□□□ -1.35
COL1A1-202ENST00000463440 SPRR2FQ96RM1 72 aa6.59□□□□□ -1.35
COL1A1-202ENST00000463440 MDN1Q9NU22 5596 aa6.53□□□□□ -1.36
COL1A1-202ENST00000463440 KRTAP20-1Q3LI63 56 aa6.53□□□□□ -1.36
COL1A1-202ENST00000463440 KRTAP13-4Q3LI77 160 aa6.52□□□□□ -1.37
COL1A1-202ENST00000463440 SEC61GP60059 68 aa6.51□□□□□ -1.37
COL1A1-202ENST00000463440 KRTAP10-7P60409 375 aaPredicted RBP6.5□□□□□ -1.37
COL1A1-202ENST00000463440 KRTAP4-8A0A0G2JLE6 195 aa6.49□□□□□ -1.37
COL1A1-202ENST00000463440 H7BZZ5 65 aa6.49□□□□□ -1.37
COL1A1-202ENST00000463440 SPRR2EP22531 72 aa6.49□□□□□ -1.37
COL1A1-202ENST00000463440 SPRR2BP35325 72 aa6.49□□□□□ -1.37
COL1A1-202ENST00000463440 SPRR2AP35326 72 aa6.49□□□□□ -1.37
COL1A1-202ENST00000463440 KRTAP4-8Q9BYQ9 185 aa6.49□□□□□ -1.37
COL1A1-202ENST00000463440 SERP1Q9Y6X1 66 aa6.49□□□□□ -1.37
COL1A1-202ENST00000463440 KRTAP10-12P60413 245 aa6.48□□□□□ -1.37
COL1A1-202ENST00000463440 CYSTM1Q9H1C7 97 aa6.46□□□□□ -1.38
COL1A1-202ENST00000463440 CAMK2N1Q7Z7J9 78 aa6.43□□□□□ -1.38
COL1A1-202ENST00000463440 ANAPC13Q9BS18 74 aa6.41□□□□□ -1.38
COL1A1-202ENST00000463440 LCE1AQ5T7P2 110 aa6.39□□□□□ -1.39
COL1A1-202ENST00000463440 KRTAP2-3P0C7H8 128 aa6.38□□□□□ -1.39
COL1A1-202ENST00000463440 KRTAP2-4Q9BYR9 128 aa6.38□□□□□ -1.39
COL1A1-202ENST00000463440 A0A1B0GU33 70 aa6.37□□□□□ -1.39
COL1A1-202ENST00000463440 A0A0D9SG42 100 aa6.36□□□□□ -1.39
COL1A1-202ENST00000463440 SPATA8Q6RVD6 105 aa6.34□□□□□ -1.39
COL1A1-202ENST00000463440 A0A1B0GU69 56 aa6.28□□□□□ -1.4
COL1A1-202ENST00000463440 SPRR2DP22532 72 aa6.28□□□□□ -1.4
COL1A1-202ENST00000463440 SPINT4Q6UDR6 99 aa6.28□□□□□ -1.4
COL1A1-202ENST00000463440 CCDC179H3BU77 68 aa6.25□□□□□ -1.41
COL1A1-202ENST00000463440 ATP5EP56381 51 aaPredicted RBP6.21□□□□□ -1.42
COL1A1-202ENST00000463440 KRTAP12-1P59990 96 aa6.21□□□□□ -1.42
COL1A1-202ENST00000463440 SMIM26A0A096LP01 95 aa6.2□□□□□ -1.42
COL1A1-202ENST00000463440 KRTAP2-2Q9BYT5 123 aa6.18□□□□□ -1.42
COL1A1-202ENST00000463440 KRTAP2-1Q9BYU5 128 aa6.18□□□□□ -1.42
COL1A1-202ENST00000463440 PRR15LQ9BU68 103 aa6.13□□□□□ -1.43
COL1A1-202ENST00000463440 A8MU10 97 aa6.11□□□□□ -1.43
COL1A1-202ENST00000463440 LCE3BQ5TA77 95 aa6.09□□□□□ -1.43
COL1A1-202ENST00000463440 KRTAP19-7Q3SYF9 63 aa6.08□□□□□ -1.44
COL1A1-202ENST00000463440 TMEM258P61165 79 aa6.05□□□□□ -1.44
COL1A1-202ENST00000463440 LINC01558Q9Y6Z2 57 aa6.05□□□□□ -1.44
COL1A1-202ENST00000463440 MT1EP04732 61 aa6.04□□□□□ -1.44
COL1A1-202ENST00000463440 LCE5AQ5TCM9 118 aa5.99□□□□□ -1.45
COL1A1-202ENST00000463440 KRTAP19-3Q7Z4W3 81 aa5.98□□□□□ -1.45
COL1A1-202ENST00000463440 KRTAP19-5Q3LI72 72 aa5.96□□□□□ -1.46
COL1A1-202ENST00000463440 TNP1P09430 55 aa5.94□□□□□ -1.46
COL1A1-202ENST00000463440 C10orf95Q9H7T3 257 aa5.93□□□□□ -1.46
COL1A1-202ENST00000463440 UQCR11O14957 56 aa5.91□□□□□ -1.46
COL1A1-202ENST00000463440 MT1GP13640 62 aa5.86□□□□□ -1.47
COL1A1-202ENST00000463440 LCE3AQ5TA76 89 aa5.85□□□□□ -1.47
COL1A1-202ENST00000463440 PP632Q6XCG6 107 aa5.84□□□□□ -1.47
COL1A1-202ENST00000463440 DSTQ03001 7570 aaKnown RBP5.82□□□□□ -1.48
COL1A1-202ENST00000463440 MT1LQ93083 61 aa5.78□□□□□ -1.48
COL1A1-202ENST00000463440 MIR22HGQ0VDD5 57 aa5.77□□□□□ -1.49
COL1A1-202ENST00000463440 MT1MQ8N339 61 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms