RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 LCE6AA0A183 80 aa1.5□□□□□ -2.17
VPS41-210ENST00000462429 H7BZZ5 65 aa1.5□□□□□ -2.17
VPS41-210ENST00000462429 RPS29P62273 56 aaKnown RBP1.5□□□□□ -2.17
VPS41-210ENST00000462429 WFDC13Q8IUB5 93 aa1.5□□□□□ -2.17
VPS41-210ENST00000462429 SNURFQ9Y675 71 aa1.5□□□□□ -2.17
VPS41-210ENST00000462429 DNAH3Q8TD57 4116 aa1.5□□□□□ -2.17
VPS41-210ENST00000462429 H0Y9P7 68 aa1.49□□□□□ -2.17
VPS41-210ENST00000462429 LINC01554Q52M75 96 aa1.49□□□□□ -2.17
VPS41-210ENST00000462429 HRCT1Q6UXD1 115 aa1.49□□□□□ -2.17
VPS41-210ENST00000462429 MRPL34Q9BQ48 92 aaKnown RBP1.49□□□□□ -2.17
VPS41-210ENST00000462429 COL7A1Q02388 2944 aa1.48□□□□□ -2.17
VPS41-210ENST00000462429 LOC101927531A0A1B0GV80 90 aa1.48□□□□□ -2.17
VPS41-210ENST00000462429 KRTAP21-2Q3LI59 83 aa1.48□□□□□ -2.17
VPS41-210ENST00000462429 LCA10Q71F78 164 aa1.48□□□□□ -2.17
VPS41-210ENST00000462429 LINC00208Q96KT6 92 aa1.48□□□□□ -2.17
VPS41-210ENST00000462429 CMYA5Q8N3K9 4069 aa1.48□□□□□ -2.17
VPS41-210ENST00000462429 HUWE1Q7Z6Z7 4374 aaKnown RBP1.47□□□□□ -2.17
VPS41-210ENST00000462429 MMP24-AS1A0A0U1RRL7 71 aa1.47□□□□□ -2.17
VPS41-210ENST00000462429 Q96NJ1 140 aa1.47□□□□□ -2.17
VPS41-210ENST00000462429 TENM2Q9NT68 2774 aa1.46□□□□□ -2.18
VPS41-210ENST00000462429 ACYP2P14621 99 aa1.46□□□□□ -2.18
VPS41-210ENST00000462429 CYP4F30PQ9H0H9 118 aa1.46□□□□□ -2.18
VPS41-210ENST00000462429 TGP01266 2768 aa1.45□□□□□ -2.18
VPS41-210ENST00000462429 CHKB-CPT1BH3BT56 60 aa1.44□□□□□ -2.18
VPS41-210ENST00000462429 SPTSSBQ8NFR3 76 aa1.44□□□□□ -2.18
VPS41-210ENST00000462429 CYSTM1Q9H1C7 97 aa1.44□□□□□ -2.18
VPS41-210ENST00000462429 CSMD3Q7Z407 3707 aa1.43□□□□□ -2.18
VPS41-210ENST00000462429 MEGF8Q7Z7M0 2845 aa1.43□□□□□ -2.18
VPS41-210ENST00000462429 SMR3BP02814 79 aaPredicted RBP1.43□□□□□ -2.18
VPS41-210ENST00000462429 PRR15LQ9BU68 103 aa1.43□□□□□ -2.18
VPS41-210ENST00000462429 DNAH9Q9NYC9 4486 aa1.42□□□□□ -2.18
VPS41-210ENST00000462429 FBN3Q75N90 2809 aa1.42□□□□□ -2.18
VPS41-210ENST00000462429 DYNC2H1Q8NCM8 4307 aaKnown RBP1.42□□□□□ -2.18
VPS41-210ENST00000462429 Q5VSD8 79 aa1.41□□□□□ -2.18
VPS41-210ENST00000462429 ATP11AUNQ6ZP68 121 aa1.41□□□□□ -2.18
VPS41-210ENST00000462429 LYSTQ99698 3801 aa1.41□□□□□ -2.18
VPS41-210ENST00000462429 DNAH7Q8WXX0 4024 aa1.41□□□□□ -2.18
VPS41-210ENST00000462429 PRKDCP78527 4128 aaKnown RBP1.4□□□□□ -2.18
VPS41-210ENST00000462429 DNAH1Q9P2D7 4330 aa1.4□□□□□ -2.18
VPS41-210ENST00000462429 KMT2AQ03164 3969 aa1.4□□□□□ -2.19
VPS41-210ENST00000462429 DMAC1Q96GE9 116 aa1.4□□□□□ -2.19
VPS41-210ENST00000462429 SRRM2Q9UQ35 2752 aaKnown RBP1.39□□□□□ -2.19
VPS41-210ENST00000462429 LINC01558Q9Y6Z2 57 aa1.39□□□□□ -2.19
VPS41-210ENST00000462429 A0A1B0GU69 56 aa1.38□□□□□ -2.19
VPS41-210ENST00000462429 BRK1Q8WUW1 75 aa1.38□□□□□ -2.19
VPS41-210ENST00000462429 VPS13DQ5THJ4 4388 aa1.38□□□□□ -2.19
VPS41-210ENST00000462429 DNAH6Q9C0G6 4158 aa1.37□□□□□ -2.19
VPS41-210ENST00000462429 C9orf92A6NGG3 77 aa1.37□□□□□ -2.19
VPS41-210ENST00000462429 SPINK7P58062 85 aa1.37□□□□□ -2.19
VPS41-210ENST00000462429 KRTAP10-4P60372 401 aaPredicted RBP1.37□□□□□ -2.19
VPS41-210ENST00000462429 RETNLBQ9BQ08 111 aa1.37□□□□□ -2.19
VPS41-210ENST00000462429 HECTD4Q9Y4D8 3996 aa1.37□□□□□ -2.19
VPS41-210ENST00000462429 ALMS1Q8TCU4 4167 aa1.37□□□□□ -2.19
VPS41-210ENST00000462429 UQCR11O14957 56 aa1.36□□□□□ -2.19
VPS41-210ENST00000462429 DNAH10Q8IVF4 4471 aa1.35□□□□□ -2.19
VPS41-210ENST00000462429 RPL37P61927 97 aaKnown RBP1.35□□□□□ -2.19
VPS41-210ENST00000462429 Q5VV11 94 aa1.35□□□□□ -2.19
VPS41-210ENST00000462429 COX6B2Q6YFQ2 88 aa1.35□□□□□ -2.19
VPS41-210ENST00000462429 CDC42SE1Q9NRR8 79 aa1.35□□□□□ -2.19
VPS41-210ENST00000462429 CRCT1Q9UGL9 99 aa1.35□□□□□ -2.19
VPS41-210ENST00000462429 STARD9Q9P2P6 4700 aa1.35□□□□□ -2.19
VPS41-210ENST00000462429 FRAS1Q86XX4 4008 aa1.34□□□□□ -2.19
VPS41-210ENST00000462429 PLECQ15149 4684 aaKnown RBP1.34□□□□□ -2.2
VPS41-210ENST00000462429 MIR22HGQ0VDD5 57 aa1.33□□□□□ -2.2
VPS41-210ENST00000462429 VPS13BQ7Z7G8 4022 aa1.33□□□□□ -2.2
VPS41-210ENST00000462429 DMBT1Q9UGM3 2413 aaPredicted RBP1.32□□□□□ -2.2
VPS41-210ENST00000462429 DNAH17Q9UFH2 4485 aa1.32□□□□□ -2.2
VPS41-210ENST00000462429 DNAH2Q9P225 4427 aa1.32□□□□□ -2.2
VPS41-210ENST00000462429 FLG2Q5D862 2391 aaPredicted RBP1.32□□□□□ -2.2
VPS41-210ENST00000462429 PKD1P98161 4303 aa1.31□□□□□ -2.2
VPS41-210ENST00000462429 H1FX-AS1Q4G0G2 97 aa1.31□□□□□ -2.2
VPS41-210ENST00000462429 SPATA8Q6RVD6 105 aa1.31□□□□□ -2.2
VPS41-210ENST00000462429 S4R3F8 94 aa1.31□□□□□ -2.2
VPS41-210ENST00000462429 MT1HL1P0DM35 61 aa1.3□□□□□ -2.2
VPS41-210ENST00000462429 CSAG1Q6PB30 78 aa1.3□□□□□ -2.2
VPS41-210ENST00000462429 FAT2Q9NYQ8 4349 aa1.29□□□□□ -2.2
VPS41-210ENST00000462429 PKHD1P08F94 4074 aa1.29□□□□□ -2.2
VPS41-210ENST00000462429 DNAH8Q96JB1 4490 aa1.28□□□□□ -2.2
VPS41-210ENST00000462429 DNAH11Q96DT5 4516 aa1.28□□□□□ -2.2
VPS41-210ENST00000462429 DNHD1Q96M86 4753 aa1.27□□□□□ -2.21
VPS41-210ENST00000462429 H0YAA0 97 aa1.27□□□□□ -2.21
VPS41-210ENST00000462429 M0QZ58 72 aa1.27□□□□□ -2.21
VPS41-210ENST00000462429 ROMO1P60602 79 aa1.26□□□□□ -2.21
VPS41-210ENST00000462429 LRP1BQ9NZR2 4599 aa1.26□□□□□ -2.21
VPS41-210ENST00000462429 A6NN06 94 aa1.25□□□□□ -2.21
VPS41-210ENST00000462429 DNAH5Q8TE73 4624 aa1.25□□□□□ -2.21
VPS41-210ENST00000462429 HYDINQ4G0P3 5121 aa1.23□□□□□ -2.21
VPS41-210ENST00000462429 PKHD1L1Q86WI1 4243 aa1.23□□□□□ -2.21
VPS41-210ENST00000462429 CRIPTQ9P021 101 aa1.23□□□□□ -2.21
VPS41-210ENST00000462429 SACSQ9NZJ4 4579 aa1.22□□□□□ -2.21
VPS41-210ENST00000462429 A0A0D9SG42 100 aa1.21□□□□□ -2.22
VPS41-210ENST00000462429 KRTAP4-1Q9BYQ7 146 aa1.21□□□□□ -2.22
VPS41-210ENST00000462429 HSPG2P98160 4391 aa1.21□□□□□ -2.22
VPS41-210ENST00000462429 TNXBP22105 4242 aa1.2□□□□□ -2.22
VPS41-210ENST00000462429 APOBP04114 4563 aaKnown RBP1.2□□□□□ -2.22
VPS41-210ENST00000462429 DYNC1H1Q14204 4646 aaKnown RBP1.19□□□□□ -2.22
VPS41-210ENST00000462429 M0R2T5 61 aa1.19□□□□□ -2.22
VPS41-210ENST00000462429 FAT1Q14517 4588 aa1.18□□□□□ -2.22
VPS41-210ENST00000462429 INE1O15225 51 aa1.18□□□□□ -2.22
VPS41-210ENST00000462429 KMT2CQ8NEZ4 4911 aaKnown RBP1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms