RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 DYNC1H1Q14204 4646 aaKnown RBP6.07□□□□□ -1.44
CPSF3-202ENST00000460593 KRTAP3-3Q9BYR6 98 aa6.05□□□□□ -1.44
CPSF3-202ENST00000460593 MYCBP2O75592 4640 aa6.05□□□□□ -1.44
CPSF3-202ENST00000460593 KRTAP3-2Q9BYR7 98 aa6.02□□□□□ -1.45
CPSF3-202ENST00000460593 RPS29P62273 56 aaKnown RBP6□□□□□ -1.45
CPSF3-202ENST00000460593 HSPG2P98160 4391 aa6□□□□□ -1.45
CPSF3-202ENST00000460593 PKHD1L1Q86WI1 4243 aa6□□□□□ -1.45
CPSF3-202ENST00000460593 KRTAP10-8P60410 259 aa5.99□□□□□ -1.45
CPSF3-202ENST00000460593 KRTAP12-2P59991 146 aa5.98□□□□□ -1.45
CPSF3-202ENST00000460593 LRP1Q07954 4544 aaKnown RBP5.97□□□□□ -1.45
CPSF3-202ENST00000460593 APOBP04114 4563 aaKnown RBP5.97□□□□□ -1.45
CPSF3-202ENST00000460593 KRTAP15-1Q3LI76 137 aa5.96□□□□□ -1.46
CPSF3-202ENST00000460593 S4R3F8 94 aa5.96□□□□□ -1.46
CPSF3-202ENST00000460593 FAT3Q8TDW7 4589 aa5.9□□□□□ -1.47
CPSF3-202ENST00000460593 KRTAP10-4P60372 401 aaPredicted RBP5.87□□□□□ -1.47
CPSF3-202ENST00000460593 LPAP08519 4548 aa5.86□□□□□ -1.47
CPSF3-202ENST00000460593 KRTAP12-1P59990 96 aa5.85□□□□□ -1.47
CPSF3-202ENST00000460593 TNXBP22105 4242 aa5.77□□□□□ -1.49
CPSF3-202ENST00000460593 XP32Q5T750 250 aa5.77□□□□□ -1.49
CPSF3-202ENST00000460593 KMT2CQ8NEZ4 4911 aaKnown RBP5.76□□□□□ -1.49
CPSF3-202ENST00000460593 LRP2P98164 4655 aa5.7□□□□□ -1.5
CPSF3-202ENST00000460593 A0A1B0GVY2 172 aa5.68□□□□□ -1.5
CPSF3-202ENST00000460593 M0QZ58 72 aa5.63□□□□□ -1.51
CPSF3-202ENST00000460593 KRTAP21-3Q3LHN1 58 aa5.62□□□□□ -1.51
CPSF3-202ENST00000460593 RYR2Q92736 4967 aa5.6□□□□□ -1.51
CPSF3-202ENST00000460593 PLAC4Q8WY50 150 aa5.57□□□□□ -1.52
CPSF3-202ENST00000460593 RYR1P21817 5038 aa5.56□□□□□ -1.52
CPSF3-202ENST00000460593 LORP23490 312 aaPredicted RBP5.55□□□□□ -1.52
CPSF3-202ENST00000460593 Q5VSD8 79 aa5.55□□□□□ -1.52
CPSF3-202ENST00000460593 KRTAP17-1Q9BYP8 105 aa5.55□□□□□ -1.52
CPSF3-202ENST00000460593 R4GN34 69 aa5.55□□□□□ -1.52
CPSF3-202ENST00000460593 A0A0A0MQY5 61 aa5.54□□□□□ -1.52
CPSF3-202ENST00000460593 KIAA1109Q2LD37 5005 aa5.49□□□□□ -1.53
CPSF3-202ENST00000460593 LUZP6Q538Z0 58 aa5.48□□□□□ -1.53
CPSF3-202ENST00000460593 ABCA13Q86UQ4 5058 aa5.46□□□□□ -1.54
CPSF3-202ENST00000460593 MT1HL1P0DM35 61 aa5.43□□□□□ -1.54
CPSF3-202ENST00000460593 RYR3Q15413 4870 aa5.42□□□□□ -1.54
CPSF3-202ENST00000460593 CAMK2N1Q7Z7J9 78 aa5.33□□□□□ -1.56
CPSF3-202ENST00000460593 MUC2Q02817 5179 aa5.28□□□□□ -1.56
CPSF3-202ENST00000460593 MUC17Q685J3 4493 aa5.27□□□□□ -1.57
CPSF3-202ENST00000460593 KRTAP4-1Q9BYQ7 146 aa5.27□□□□□ -1.57
CPSF3-202ENST00000460593 EPPK1P58107 5090 aaKnown RBP5.22□□□□□ -1.57
CPSF3-202ENST00000460593 PP632Q6XCG6 107 aa5.19□□□□□ -1.58
CPSF3-202ENST00000460593 KRTAP4-5Q9BYR2 181 aa5.16□□□□□ -1.58
CPSF3-202ENST00000460593 SEC61BP60468 96 aaKnown RBP5.1□□□□□ -1.59
CPSF3-202ENST00000460593 TNP1P09430 55 aa5.08□□□□□ -1.6
CPSF3-202ENST00000460593 KRTAP19-2Q3LHN2 52 aa5.08□□□□□ -1.6
CPSF3-202ENST00000460593 PCLOQ9Y6V0 5065 aa5.05□□□□□ -1.6
CPSF3-202ENST00000460593 SPRR5A0A1B0GTR4 108 aa5.01□□□□□ -1.61
CPSF3-202ENST00000460593 FAT4Q6V0I7 4981 aa5□□□□□ -1.61
CPSF3-202ENST00000460593 FLGP20930 4061 aaPredicted RBP4.97□□□□□ -1.61
CPSF3-202ENST00000460593 HERC2O95714 4834 aa4.92□□□□□ -1.62
CPSF3-202ENST00000460593 J3QL48 77 aa4.89□□□□□ -1.63
CPSF3-202ENST00000460593 LCE3AQ5TA76 89 aa4.88□□□□□ -1.63
CPSF3-202ENST00000460593 HERC1Q15751 4861 aa4.86□□□□□ -1.63
CPSF3-202ENST00000460593 KRTAP23-1A1A580 65 aa4.83□□□□□ -1.64
CPSF3-202ENST00000460593 HMCN2Q8NDA2 5059 aa4.79□□□□□ -1.64
CPSF3-202ENST00000460593 BIRC6Q9NR09 4857 aa4.77□□□□□ -1.65
CPSF3-202ENST00000460593 KRTAP19-1Q8IUB9 90 aa4.77□□□□□ -1.65
CPSF3-202ENST00000460593 PRO2289Q9P1D8 64 aa4.75□□□□□ -1.65
CPSF3-202ENST00000460593 RNF213Q63HN8 5207 aa4.73□□□□□ -1.65
CPSF3-202ENST00000460593 UBR4Q5T4S7 5183 aa4.7□□□□□ -1.66
CPSF3-202ENST00000460593 SPRR2GQ9BYE4 73 aa4.7□□□□□ -1.66
CPSF3-202ENST00000460593 M0R2T5 61 aa4.69□□□□□ -1.66
CPSF3-202ENST00000460593 LCE2CQ5TA81 110 aa4.67□□□□□ -1.66
CPSF3-202ENST00000460593 KRTAP10-10P60014 251 aa4.61□□□□□ -1.67
CPSF3-202ENST00000460593 MT1FP04733 61 aa4.6□□□□□ -1.67
CPSF3-202ENST00000460593 KRTAP8-1Q8IUC2 63 aa4.6□□□□□ -1.67
CPSF3-202ENST00000460593 INE1O15225 51 aa4.59□□□□□ -1.67
CPSF3-202ENST00000460593 KRTAP12-3P60328 96 aa4.57□□□□□ -1.68
CPSF3-202ENST00000460593 MT2AP02795 61 aa4.55□□□□□ -1.68
CPSF3-202ENST00000460593 KRTAP10-5P60370 271 aa4.53□□□□□ -1.68
CPSF3-202ENST00000460593 MT1HP80294 61 aa4.53□□□□□ -1.68
CPSF3-202ENST00000460593 KRTAP10-12P60413 245 aa4.52□□□□□ -1.69
CPSF3-202ENST00000460593 MT1XP80297 61 aa4.52□□□□□ -1.69
CPSF3-202ENST00000460593 KRTAP10-7P60409 375 aaPredicted RBP4.51□□□□□ -1.69
CPSF3-202ENST00000460593 KMT2DO14686 5537 aa4.49□□□□□ -1.69
CPSF3-202ENST00000460593 MT1BP07438 61 aa4.47□□□□□ -1.69
CPSF3-202ENST00000460593 KRTAP9-8Q9BYQ0 159 aa4.46□□□□□ -1.7
CPSF3-202ENST00000460593 KRTAP19-8Q3LI54 63 aa4.41□□□□□ -1.7
CPSF3-202ENST00000460593 USH2AO75445 5202 aa4.39□□□□□ -1.71
CPSF3-202ENST00000460593 KRTAP19-5Q3LI72 72 aa4.34□□□□□ -1.71
CPSF3-202ENST00000460593 KRTAP9-6A8MVA2 160 aa4.3□□□□□ -1.72
CPSF3-202ENST00000460593 LCE3CQ5T5A8 94 aa4.3□□□□□ -1.72
CPSF3-202ENST00000460593 KRTAP4-7Q9BYR0 210 aa4.25□□□□□ -1.73
CPSF3-202ENST00000460593 KRTAP4-8A0A0G2JLE6 195 aa4.24□□□□□ -1.73
CPSF3-202ENST00000460593 KRTAP4-8Q9BYQ9 185 aa4.24□□□□□ -1.73
CPSF3-202ENST00000460593 KRTAP9-3Q9BYQ3 159 aa4.23□□□□□ -1.73
CPSF3-202ENST00000460593 LCE2BO14633 110 aa4.1□□□□□ -1.75
CPSF3-202ENST00000460593 KRTAP2-3P0C7H8 128 aa4.08□□□□□ -1.76
CPSF3-202ENST00000460593 KRTAP2-4Q9BYR9 128 aa4.08□□□□□ -1.76
CPSF3-202ENST00000460593 KRTAP2-1Q9BYU5 128 aa4.08□□□□□ -1.76
CPSF3-202ENST00000460593 KRTAP19-7Q3SYF9 63 aa4.02□□□□□ -1.77
CPSF3-202ENST00000460593 LOC100996750A0A140TA64 210 aa3.94□□□□□ -1.78
CPSF3-202ENST00000460593 MT1LQ93083 61 aa3.91□□□□□ -1.78
CPSF3-202ENST00000460593 KRTAP4-3Q9BYR4 195 aa3.9□□□□□ -1.79
CPSF3-202ENST00000460593 FSIP2Q5CZC0 6907 aa3.89□□□□□ -1.79
CPSF3-202ENST00000460593 CRCT1Q9UGL9 99 aa3.88□□□□□ -1.79
CPSF3-202ENST00000460593 MT1EP04732 61 aa3.86□□□□□ -1.79
CPSF3-202ENST00000460593 DSTQ03001 7570 aaKnown RBP3.84□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms