RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 MP68P56378 58 aa10.38□□□□□ -0.75
PTPN4-208ENST00000460289 KLKP1Q107X0 134 aa10.38□□□□□ -0.75
PTPN4-208ENST00000460289 SPRR2GQ9BYE4 73 aa10.37□□□□□ -0.75
PTPN4-208ENST00000460289 OCR1Q9BZK8 76 aa10.37□□□□□ -0.75
PTPN4-208ENST00000460289 A8MUN3 132 aa10.35□□□□□ -0.75
PTPN4-208ENST00000460289 NDUFC1O43677 76 aa10.34□□□□□ -0.75
PTPN4-208ENST00000460289 MACF1Q9UPN3 7388 aaKnown RBP10.32□□□□□ -0.76
PTPN4-208ENST00000460289 Q5VV11 94 aa10.32□□□□□ -0.76
PTPN4-208ENST00000460289 IMUPQ9GZP8 106 aa10.32□□□□□ -0.76
PTPN4-208ENST00000460289 KRTAP19-8Q3LI54 63 aa10.29□□□□□ -0.76
PTPN4-208ENST00000460289 CRIPTQ9P021 101 aa10.29□□□□□ -0.76
PTPN4-208ENST00000460289 MT1BP07438 61 aa10.26□□□□□ -0.77
PTPN4-208ENST00000460289 H3BPC8 53 aa10.23□□□□□ -0.77
PTPN4-208ENST00000460289 SCGB1A1P11684 91 aa10.23□□□□□ -0.77
PTPN4-208ENST00000460289 H0YAA0 97 aa10.22□□□□□ -0.77
PTPN4-208ENST00000460289 SYNE2Q8WXH0 6885 aaKnown RBP10.21□□□□□ -0.77
PTPN4-208ENST00000460289 A6NN06 94 aa10.17□□□□□ -0.78
PTPN4-208ENST00000460289 ADM2Q7Z4H4 148 aa10.09□□□□□ -0.79
PTPN4-208ENST00000460289 KRTAP6-3Q3LI67 103 aa10.06□□□□□ -0.8
PTPN4-208ENST00000460289 KRTAP10-5P60370 271 aa10.04□□□□□ -0.8
PTPN4-208ENST00000460289 DMAC1Q96GE9 116 aa10.04□□□□□ -0.8
PTPN4-208ENST00000460289 K7ERU9 68 aa10.02□□□□□ -0.81
PTPN4-208ENST00000460289 MT-ATP8P03928 68 aa9.98□□□□□ -0.81
PTPN4-208ENST00000460289 SMIM20Q8N5G0 67 aa9.96□□□□□ -0.82
PTPN4-208ENST00000460289 KRTAP3-2Q9BYR7 98 aa9.93□□□□□ -0.82
PTPN4-208ENST00000460289 C20orf197Q8N268 126 aa9.92□□□□□ -0.82
PTPN4-208ENST00000460289 TRAV7A0A075B6U4 112 aa9.91□□□□□ -0.82
PTPN4-208ENST00000460289 R4GN34 69 aa9.87□□□□□ -0.83
PTPN4-208ENST00000460289 ACYP2P14621 99 aa9.85□□□□□ -0.83
PTPN4-208ENST00000460289 P0C880 135 aa9.84□□□□□ -0.83
PTPN4-208ENST00000460289 PLAC4Q8WY50 150 aa9.79□□□□□ -0.84
PTPN4-208ENST00000460289 M0QZ58 72 aa9.76□□□□□ -0.85
PTPN4-208ENST00000460289 SPTSSBQ8NFR3 76 aa9.75□□□□□ -0.85
PTPN4-208ENST00000460289 PRO2289Q9P1D8 64 aa9.75□□□□□ -0.85
PTPN4-208ENST00000460289 SNURFQ9Y675 71 aa9.68□□□□□ -0.86
PTPN4-208ENST00000460289 CHKB-CPT1BH3BT56 60 aa9.66□□□□□ -0.86
PTPN4-208ENST00000460289 MT1XP80297 61 aa9.64□□□□□ -0.87
PTPN4-208ENST00000460289 KRTAP5-9P26371 169 aa9.61□□□□□ -0.87
PTPN4-208ENST00000460289 LINC01554Q52M75 96 aa9.61□□□□□ -0.87
PTPN4-208ENST00000460289 SERP2Q8N6R1 65 aa9.6□□□□□ -0.87
PTPN4-208ENST00000460289 MUC12Q9UKN1 5478 aa9.59□□□□□ -0.87
PTPN4-208ENST00000460289 SPANXA2-OT1Q8N9U9 137 aa9.59□□□□□ -0.87
PTPN4-208ENST00000460289 NEBP20929 6669 aa9.57□□□□□ -0.88
PTPN4-208ENST00000460289 KMT2DO14686 5537 aa9.47□□□□□ -0.89
PTPN4-208ENST00000460289 KRTAP12-2P59991 146 aa9.43□□□□□ -0.9
PTPN4-208ENST00000460289 KRTAP8-1Q8IUC2 63 aa9.35□□□□□ -0.91
PTPN4-208ENST00000460289 SPRR2FQ96RM1 72 aa9.35□□□□□ -0.91
PTPN4-208ENST00000460289 MDN1Q9NU22 5596 aa9.34□□□□□ -0.91
PTPN4-208ENST00000460289 COX7CP15954 63 aa9.31□□□□□ -0.92
PTPN4-208ENST00000460289 COA5Q86WW8 74 aa9.29□□□□□ -0.92
PTPN4-208ENST00000460289 KRTAP20-1Q3LI63 56 aa9.27□□□□□ -0.93
PTPN4-208ENST00000460289 KRTAP4-8A0A0G2JLE6 195 aa9.2□□□□□ -0.94
PTPN4-208ENST00000460289 KRTAP10-7P60409 375 aaPredicted RBP9.2□□□□□ -0.94
PTPN4-208ENST00000460289 KRTAP13-4Q3LI77 160 aa9.2□□□□□ -0.94
PTPN4-208ENST00000460289 KRTAP4-8Q9BYQ9 185 aa9.2□□□□□ -0.94
PTPN4-208ENST00000460289 SPRR2EP22531 72 aa9.19□□□□□ -0.94
PTPN4-208ENST00000460289 SPRR2BP35325 72 aa9.19□□□□□ -0.94
PTPN4-208ENST00000460289 SPRR2AP35326 72 aa9.19□□□□□ -0.94
PTPN4-208ENST00000460289 SEC61GP60059 68 aa9.19□□□□□ -0.94
PTPN4-208ENST00000460289 KRTAP10-12P60413 245 aa9.18□□□□□ -0.94
PTPN4-208ENST00000460289 SERP1Q9Y6X1 66 aa9.17□□□□□ -0.94
PTPN4-208ENST00000460289 H7BZZ5 65 aa9.14□□□□□ -0.95
PTPN4-208ENST00000460289 CYSTM1Q9H1C7 97 aa9.09□□□□□ -0.95
PTPN4-208ENST00000460289 KRTAP2-3P0C7H8 128 aa9.08□□□□□ -0.96
PTPN4-208ENST00000460289 CAMK2N1Q7Z7J9 78 aa9.08□□□□□ -0.96
PTPN4-208ENST00000460289 KRTAP2-4Q9BYR9 128 aa9.08□□□□□ -0.96
PTPN4-208ENST00000460289 LCE1AQ5T7P2 110 aa9.06□□□□□ -0.96
PTPN4-208ENST00000460289 A0A1B0GU33 70 aa8.99□□□□□ -0.97
PTPN4-208ENST00000460289 ANAPC13Q9BS18 74 aa8.99□□□□□ -0.97
PTPN4-208ENST00000460289 A0A0D9SG42 100 aa8.96□□□□□ -0.98
PTPN4-208ENST00000460289 SPATA8Q6RVD6 105 aa8.95□□□□□ -0.98
PTPN4-208ENST00000460289 SPRR2DP22532 72 aa8.89□□□□□ -0.99
PTPN4-208ENST00000460289 SPINT4Q6UDR6 99 aa8.86□□□□□ -0.99
PTPN4-208ENST00000460289 A0A1B0GU69 56 aa8.85□□□□□ -0.99
PTPN4-208ENST00000460289 KRTAP2-2Q9BYT5 123 aa8.8□□□□□ -1
PTPN4-208ENST00000460289 KRTAP2-1Q9BYU5 128 aa8.8□□□□□ -1
PTPN4-208ENST00000460289 CCDC179H3BU77 68 aa8.79□□□□□ -1
PTPN4-208ENST00000460289 KRTAP12-1P59990 96 aa8.77□□□□□ -1.01
PTPN4-208ENST00000460289 SMIM26A0A096LP01 95 aa8.75□□□□□ -1.01
PTPN4-208ENST00000460289 ATP5EP56381 51 aaPredicted RBP8.73□□□□□ -1.01
PTPN4-208ENST00000460289 LCE3BQ5TA77 95 aa8.64□□□□□ -1.03
PTPN4-208ENST00000460289 PRR15LQ9BU68 103 aa8.63□□□□□ -1.03
PTPN4-208ENST00000460289 KRTAP19-7Q3SYF9 63 aa8.62□□□□□ -1.03
PTPN4-208ENST00000460289 A8MU10 97 aa8.61□□□□□ -1.03
PTPN4-208ENST00000460289 MT1EP04732 61 aa8.55□□□□□ -1.04
PTPN4-208ENST00000460289 LINC01558Q9Y6Z2 57 aa8.52□□□□□ -1.05
PTPN4-208ENST00000460289 TMEM258P61165 79 aa8.5□□□□□ -1.05
PTPN4-208ENST00000460289 LCE5AQ5TCM9 118 aa8.49□□□□□ -1.05
PTPN4-208ENST00000460289 KRTAP19-3Q7Z4W3 81 aa8.48□□□□□ -1.05
PTPN4-208ENST00000460289 KRTAP19-5Q3LI72 72 aa8.43□□□□□ -1.06
PTPN4-208ENST00000460289 TNP1P09430 55 aa8.39□□□□□ -1.07
PTPN4-208ENST00000460289 C10orf95Q9H7T3 257 aa8.38□□□□□ -1.07
PTPN4-208ENST00000460289 UQCR11O14957 56 aa8.34□□□□□ -1.07
PTPN4-208ENST00000460289 MT1GP13640 62 aa8.32□□□□□ -1.08
PTPN4-208ENST00000460289 DSTQ03001 7570 aaKnown RBP8.29□□□□□ -1.08
PTPN4-208ENST00000460289 PP632Q6XCG6 107 aa8.27□□□□□ -1.09
PTPN4-208ENST00000460289 LCE3AQ5TA76 89 aa8.26□□□□□ -1.09
PTPN4-208ENST00000460289 MT1LQ93083 61 aa8.18□□□□□ -1.1
PTPN4-208ENST00000460289 MIR22HGQ0VDD5 57 aa8.13□□□□□ -1.11
PTPN4-208ENST00000460289 MT1MQ8N339 61 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms