RNA–Protein interactions for RNA: ENST00000450169.6

LSM5-208, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM5, Length 2,258 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-208ENST00000450169 KRTAP19-1Q8IUB9 90 aa4.64□□□□□ -1.67
LSM5-208ENST00000450169 DNAH6Q9C0G6 4158 aa4.64□□□□□ -1.67
LSM5-208ENST00000450169 HYDINQ4G0P3 5121 aa4.63□□□□□ -1.67
LSM5-208ENST00000450169 DNAH5Q8TE73 4624 aa4.62□□□□□ -1.67
LSM5-208ENST00000450169 C10orf95Q9H7T3 257 aa4.62□□□□□ -1.67
LSM5-208ENST00000450169 DNAH11Q96DT5 4516 aa4.61□□□□□ -1.67
LSM5-208ENST00000450169 FAT2Q9NYQ8 4349 aa4.59□□□□□ -1.68
LSM5-208ENST00000450169 KRTAP9-9Q9BYP9 154 aa4.58□□□□□ -1.68
LSM5-208ENST00000450169 A0A0D9SG42 100 aa4.56□□□□□ -1.68
LSM5-208ENST00000450169 SACSQ9NZJ4 4579 aa4.56□□□□□ -1.68
LSM5-208ENST00000450169 PKD1P98161 4303 aa4.55□□□□□ -1.68
LSM5-208ENST00000450169 KRTAP13-4Q3LI77 160 aa4.53□□□□□ -1.68
LSM5-208ENST00000450169 KRTAP21-3Q3LHN1 58 aa4.52□□□□□ -1.69
LSM5-208ENST00000450169 LUZP6Q538Z0 58 aa4.52□□□□□ -1.69
LSM5-208ENST00000450169 KRTAP1-4P0C5Y4 121 aa4.51□□□□□ -1.69
LSM5-208ENST00000450169 PKHD1P08F94 4074 aa4.51□□□□□ -1.69
LSM5-208ENST00000450169 KRTAP10-6P60371 365 aaPredicted RBP4.51□□□□□ -1.69
LSM5-208ENST00000450169 LRP1BQ9NZR2 4599 aa4.5□□□□□ -1.69
LSM5-208ENST00000450169 S4R3F8 94 aa4.47□□□□□ -1.69
LSM5-208ENST00000450169 C9orf92A6NGG3 77 aa4.46□□□□□ -1.7
LSM5-208ENST00000450169 KRTAP4-12Q9BQ66 201 aa4.46□□□□□ -1.7
LSM5-208ENST00000450169 VPS13BQ7Z7G8 4022 aa4.45□□□□□ -1.7
LSM5-208ENST00000450169 DMBT1Q9UGM3 2413 aaPredicted RBP4.44□□□□□ -1.7
LSM5-208ENST00000450169 KMT2CQ8NEZ4 4911 aaKnown RBP4.43□□□□□ -1.7
LSM5-208ENST00000450169 KRTAP12-2P59991 146 aa4.43□□□□□ -1.7
LSM5-208ENST00000450169 RPS29P62273 56 aaKnown RBP4.42□□□□□ -1.7
LSM5-208ENST00000450169 KRTAP9-3Q9BYQ3 159 aa4.41□□□□□ -1.7
LSM5-208ENST00000450169 LCE5AQ5TCM9 118 aa4.41□□□□□ -1.7
LSM5-208ENST00000450169 DYNC1H1Q14204 4646 aaKnown RBP4.4□□□□□ -1.7
LSM5-208ENST00000450169 RYR2Q92736 4967 aa4.4□□□□□ -1.71
LSM5-208ENST00000450169 KRTAP10-1P60331 282 aa4.37□□□□□ -1.71
LSM5-208ENST00000450169 FAT1Q14517 4588 aa4.36□□□□□ -1.71
LSM5-208ENST00000450169 APOBP04114 4563 aaKnown RBP4.36□□□□□ -1.71
LSM5-208ENST00000450169 KRTAP12-1P59990 96 aa4.36□□□□□ -1.71
LSM5-208ENST00000450169 KRTAP4-8Q9BYQ9 185 aa4.35□□□□□ -1.71
LSM5-208ENST00000450169 PLAC4Q8WY50 150 aa4.31□□□□□ -1.72
LSM5-208ENST00000450169 KRTAP9-2Q9BYQ4 174 aa4.31□□□□□ -1.72
LSM5-208ENST00000450169 RYR3Q15413 4870 aa4.31□□□□□ -1.72
LSM5-208ENST00000450169 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.29□□□□□ -1.72
LSM5-208ENST00000450169 A0A1B0GVY2 172 aa4.24□□□□□ -1.73
LSM5-208ENST00000450169 PKHD1L1Q86WI1 4243 aa4.24□□□□□ -1.73
LSM5-208ENST00000450169 HSPG2P98160 4391 aa4.22□□□□□ -1.73
LSM5-208ENST00000450169 M0QZ58 72 aa4.22□□□□□ -1.73
LSM5-208ENST00000450169 LCE3BQ5TA77 95 aa4.21□□□□□ -1.73
LSM5-208ENST00000450169 SMR3BP02814 79 aaPredicted RBP4.21□□□□□ -1.74
LSM5-208ENST00000450169 KRTAP10-8P60410 259 aa4.2□□□□□ -1.74
LSM5-208ENST00000450169 LRP1Q07954 4544 aaKnown RBP4.19□□□□□ -1.74
LSM5-208ENST00000450169 KRTAP10-4P60372 401 aaPredicted RBP4.16□□□□□ -1.74
LSM5-208ENST00000450169 RYR1P21817 5038 aa4.16□□□□□ -1.74
LSM5-208ENST00000450169 TNXBP22105 4242 aa4.16□□□□□ -1.74
LSM5-208ENST00000450169 EPPK1P58107 5090 aaKnown RBP4.15□□□□□ -1.74
LSM5-208ENST00000450169 KIAA1109Q2LD37 5005 aa4.14□□□□□ -1.75
LSM5-208ENST00000450169 MYCBP2O75592 4640 aa4.12□□□□□ -1.75
LSM5-208ENST00000450169 FAT3Q8TDW7 4589 aa4.12□□□□□ -1.75
LSM5-208ENST00000450169 KRTAP17-1Q9BYP8 105 aa4.07□□□□□ -1.76
LSM5-208ENST00000450169 PP632Q6XCG6 107 aa4.06□□□□□ -1.76
LSM5-208ENST00000450169 R4GN34 69 aa4.04□□□□□ -1.76
LSM5-208ENST00000450169 Q5VSD8 79 aa4.03□□□□□ -1.76
LSM5-208ENST00000450169 CAMK2N1Q7Z7J9 78 aa4.01□□□□□ -1.77
LSM5-208ENST00000450169 LCE1AQ5T7P2 110 aa3.96□□□□□ -1.78
LSM5-208ENST00000450169 ABCA13Q86UQ4 5058 aa3.95□□□□□ -1.78
LSM5-208ENST00000450169 PRO2289Q9P1D8 64 aa3.95□□□□□ -1.78
LSM5-208ENST00000450169 SPRR5A0A1B0GTR4 108 aa3.94□□□□□ -1.78
LSM5-208ENST00000450169 LCE1DQ5T752 114 aa3.92□□□□□ -1.78
LSM5-208ENST00000450169 LPAP08519 4548 aa3.91□□□□□ -1.78
LSM5-208ENST00000450169 MT1HL1P0DM35 61 aa3.91□□□□□ -1.78
LSM5-208ENST00000450169 LRP2P98164 4655 aa3.9□□□□□ -1.79
LSM5-208ENST00000450169 KRTAP4-5Q9BYR2 181 aa3.89□□□□□ -1.79
LSM5-208ENST00000450169 HERC2O95714 4834 aa3.89□□□□□ -1.79
LSM5-208ENST00000450169 KRTAP4-8A0A0G2JLE6 195 aa3.87□□□□□ -1.79
LSM5-208ENST00000450169 BIRC6Q9NR09 4857 aa3.85□□□□□ -1.79
LSM5-208ENST00000450169 INE1O15225 51 aa3.81□□□□□ -1.8
LSM5-208ENST00000450169 KRTAP4-7Q9BYR0 210 aa3.79□□□□□ -1.8
LSM5-208ENST00000450169 TNP1P09430 55 aa3.78□□□□□ -1.8
LSM5-208ENST00000450169 PCLOQ9Y6V0 5065 aa3.75□□□□□ -1.81
LSM5-208ENST00000450169 KRTAP9-8Q9BYQ0 159 aa3.74□□□□□ -1.81
LSM5-208ENST00000450169 HERC1Q15751 4861 aa3.74□□□□□ -1.81
LSM5-208ENST00000450169 LCE1FQ5T754 118 aa3.73□□□□□ -1.81
LSM5-208ENST00000450169 MUC17Q685J3 4493 aa3.73□□□□□ -1.81
LSM5-208ENST00000450169 KRTAP4-9Q9BYQ8 210 aa3.72□□□□□ -1.81
LSM5-208ENST00000450169 KRTAP4-11Q9BYQ6 195 aa3.72□□□□□ -1.81
LSM5-208ENST00000450169 KRTAP5-3Q6L8H2 238 aa3.7□□□□□ -1.82
LSM5-208ENST00000450169 MUC2Q02817 5179 aa3.7□□□□□ -1.82
LSM5-208ENST00000450169 MT3P25713 68 aa3.68□□□□□ -1.82
LSM5-208ENST00000450169 HMCN2Q8NDA2 5059 aa3.67□□□□□ -1.82
LSM5-208ENST00000450169 KRTAP4-1Q9BYQ7 146 aa3.61□□□□□ -1.83
LSM5-208ENST00000450169 KRTAP2-2Q9BYT5 123 aa3.61□□□□□ -1.83
LSM5-208ENST00000450169 KRTAP4-2Q9BYR5 136 aa3.6□□□□□ -1.83
LSM5-208ENST00000450169 UBR4Q5T4S7 5183 aa3.54□□□□□ -1.84
LSM5-208ENST00000450169 FLGP20930 4061 aaPredicted RBP3.54□□□□□ -1.84
LSM5-208ENST00000450169 FAT4Q6V0I7 4981 aa3.54□□□□□ -1.84
LSM5-208ENST00000450169 LCE3AQ5TA76 89 aa3.53□□□□□ -1.84
LSM5-208ENST00000450169 KRTAP19-2Q3LHN2 52 aa3.52□□□□□ -1.85
LSM5-208ENST00000450169 RNF213Q63HN8 5207 aa3.52□□□□□ -1.85
LSM5-208ENST00000450169 LCE3CQ5T5A8 94 aa3.49□□□□□ -1.85
LSM5-208ENST00000450169 KRTAP8-1Q8IUC2 63 aa3.44□□□□□ -1.86
LSM5-208ENST00000450169 KRTAP10-12P60413 245 aa3.41□□□□□ -1.86
LSM5-208ENST00000450169 SPRR2GQ9BYE4 73 aa3.37□□□□□ -1.87
LSM5-208ENST00000450169 KRTAP10-10P60014 251 aa3.35□□□□□ -1.87
LSM5-208ENST00000450169 KRTAP12-3P60328 96 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms