RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 KRTAP10-5P60370 271 aa9.15□□□□□ -0.94
SDC1-205ENST00000447124 MUC12Q9UKN1 5478 aa9.12□□□□□ -0.95
SDC1-205ENST00000447124 FAM240AA0A1B0GVK7 77 aa9.09□□□□□ -0.95
SDC1-205ENST00000447124 UQCRQO14949 82 aa9.09□□□□□ -0.95
SDC1-205ENST00000447124 HIST1H4AP62805 103 aaKnown RBP9.09□□□□□ -0.95
SDC1-205ENST00000447124 ATP5EP2Q5VTU8 51 aa9.08□□□□□ -0.96
SDC1-205ENST00000447124 H0Y9P7 68 aa9.07□□□□□ -0.96
SDC1-205ENST00000447124 CRIPTQ9P021 101 aa9.06□□□□□ -0.96
SDC1-205ENST00000447124 IMUPQ9GZP8 106 aa9.04□□□□□ -0.96
SDC1-205ENST00000447124 ATOX1O00244 68 aa9.01□□□□□ -0.97
SDC1-205ENST00000447124 NDUFC1O43677 76 aa9□□□□□ -0.97
SDC1-205ENST00000447124 H0YAA0 97 aa8.97□□□□□ -0.97
SDC1-205ENST00000447124 LINC00643Q86TS7 51 aa8.95□□□□□ -0.98
SDC1-205ENST00000447124 LINC00208Q96KT6 92 aa8.92□□□□□ -0.98
SDC1-205ENST00000447124 A8MUN3 132 aa8.91□□□□□ -0.98
SDC1-205ENST00000447124 KMT2DO14686 5537 aa8.9□□□□□ -0.98
SDC1-205ENST00000447124 ADM2Q7Z4H4 148 aa8.9□□□□□ -0.98
SDC1-205ENST00000447124 KRTAP5-9P26371 169 aa8.89□□□□□ -0.99
SDC1-205ENST00000447124 OCR1Q9BZK8 76 aa8.88□□□□□ -0.99
SDC1-205ENST00000447124 MDN1Q9NU22 5596 aa8.87□□□□□ -0.99
SDC1-205ENST00000447124 MP68P56378 58 aa8.81□□□□□ -1
SDC1-205ENST00000447124 A0A1B0GV90 55 aa8.78□□□□□ -1
SDC1-205ENST00000447124 MT1XP80297 61 aa8.74□□□□□ -1.01
SDC1-205ENST00000447124 P0C880 135 aa8.72□□□□□ -1.01
SDC1-205ENST00000447124 KRTAP20-1Q3LI63 56 aa8.7□□□□□ -1.02
SDC1-205ENST00000447124 H3BPC8 53 aa8.67□□□□□ -1.02
SDC1-205ENST00000447124 PLAC4Q8WY50 150 aa8.66□□□□□ -1.02
SDC1-205ENST00000447124 KRTAP3-2Q9BYR7 98 aa8.66□□□□□ -1.02
SDC1-205ENST00000447124 DMAC1Q96GE9 116 aa8.65□□□□□ -1.02
SDC1-205ENST00000447124 PRO2289Q9P1D8 64 aa8.65□□□□□ -1.02
SDC1-205ENST00000447124 R4GN34 69 aa8.64□□□□□ -1.03
SDC1-205ENST00000447124 M0QZ58 72 aa8.59□□□□□ -1.03
SDC1-205ENST00000447124 SCGB1A1P11684 91 aa8.57□□□□□ -1.04
SDC1-205ENST00000447124 C20orf197Q8N268 126 aa8.57□□□□□ -1.04
SDC1-205ENST00000447124 SPRR2FQ96RM1 72 aa8.57□□□□□ -1.04
SDC1-205ENST00000447124 J3QR89 54 aa8.55□□□□□ -1.04
SDC1-205ENST00000447124 KRTAP12-2P59991 146 aa8.52□□□□□ -1.05
SDC1-205ENST00000447124 KRTAP8-1Q8IUC2 63 aa8.49□□□□□ -1.05
SDC1-205ENST00000447124 KRTAP2-3P0C7H8 128 aa8.47□□□□□ -1.05
SDC1-205ENST00000447124 SPRR2EP22531 72 aa8.47□□□□□ -1.05
SDC1-205ENST00000447124 SPRR2BP35325 72 aa8.47□□□□□ -1.05
SDC1-205ENST00000447124 SPRR2AP35326 72 aa8.47□□□□□ -1.05
SDC1-205ENST00000447124 LINC01554Q52M75 96 aa8.47□□□□□ -1.05
SDC1-205ENST00000447124 KRTAP2-4Q9BYR9 128 aa8.47□□□□□ -1.05
SDC1-205ENST00000447124 KRTAP4-8A0A0G2JLE6 195 aa8.45□□□□□ -1.06
SDC1-205ENST00000447124 KRTAP4-8Q9BYQ9 185 aa8.45□□□□□ -1.06
SDC1-205ENST00000447124 TRAV7A0A075B6U4 112 aa8.44□□□□□ -1.06
SDC1-205ENST00000447124 ACYP2P14621 99 aa8.41□□□□□ -1.06
SDC1-205ENST00000447124 LCE1AQ5T7P2 110 aa8.39□□□□□ -1.07
SDC1-205ENST00000447124 MT-ATP8P03928 68 aa8.38□□□□□ -1.07
SDC1-205ENST00000447124 KRTAP10-7P60409 375 aaPredicted RBP8.35□□□□□ -1.07
SDC1-205ENST00000447124 KRTAP10-12P60413 245 aa8.29□□□□□ -1.08
SDC1-205ENST00000447124 SMIM20Q8N5G0 67 aa8.28□□□□□ -1.08
SDC1-205ENST00000447124 SPTSSBQ8NFR3 76 aa8.27□□□□□ -1.09
SDC1-205ENST00000447124 CHKB-CPT1BH3BT56 60 aa8.21□□□□□ -1.1
SDC1-205ENST00000447124 SNURFQ9Y675 71 aa8.21□□□□□ -1.1
SDC1-205ENST00000447124 KRTAP2-2Q9BYT5 123 aa8.2□□□□□ -1.1
SDC1-205ENST00000447124 KRTAP2-1Q9BYU5 128 aa8.2□□□□□ -1.1
SDC1-205ENST00000447124 SPRR2DP22532 72 aa8.18□□□□□ -1.1
SDC1-205ENST00000447124 K7ERU9 68 aa8.17□□□□□ -1.1
SDC1-205ENST00000447124 KRTAP13-4Q3LI77 160 aa8.11□□□□□ -1.11
SDC1-205ENST00000447124 SPANXA2-OT1Q8N9U9 137 aa8.09□□□□□ -1.11
SDC1-205ENST00000447124 SERP2Q8N6R1 65 aa7.99□□□□□ -1.13
SDC1-205ENST00000447124 LCE3BQ5TA77 95 aa7.98□□□□□ -1.13
SDC1-205ENST00000447124 CAMK2N1Q7Z7J9 78 aa7.91□□□□□ -1.14
SDC1-205ENST00000447124 COA5Q86WW8 74 aa7.89□□□□□ -1.15
SDC1-205ENST00000447124 KRTAP19-7Q3SYF9 63 aa7.83□□□□□ -1.16
SDC1-205ENST00000447124 A0A0D9SG42 100 aa7.79□□□□□ -1.16
SDC1-205ENST00000447124 SPATA8Q6RVD6 105 aa7.77□□□□□ -1.17
SDC1-205ENST00000447124 SERP1Q9Y6X1 66 aa7.76□□□□□ -1.17
SDC1-205ENST00000447124 MT1EP04732 61 aa7.75□□□□□ -1.17
SDC1-205ENST00000447124 LCE5AQ5TCM9 118 aa7.75□□□□□ -1.17
SDC1-205ENST00000447124 DSTQ03001 7570 aaKnown RBP7.74□□□□□ -1.17
SDC1-205ENST00000447124 SEC61GP60059 68 aa7.73□□□□□ -1.17
SDC1-205ENST00000447124 COX7CP15954 63 aa7.71□□□□□ -1.18
SDC1-205ENST00000447124 CYSTM1Q9H1C7 97 aa7.7□□□□□ -1.18
SDC1-205ENST00000447124 A0A1B0GU33 70 aa7.69□□□□□ -1.18
SDC1-205ENST00000447124 SPINT4Q6UDR6 99 aa7.69□□□□□ -1.18
SDC1-205ENST00000447124 KRTAP19-3Q7Z4W3 81 aa7.69□□□□□ -1.18
SDC1-205ENST00000447124 H7BZZ5 65 aa7.65□□□□□ -1.18
SDC1-205ENST00000447124 KRTAP12-1P59990 96 aa7.65□□□□□ -1.18
SDC1-205ENST00000447124 KRTAP19-5Q3LI72 72 aa7.59□□□□□ -1.19
SDC1-205ENST00000447124 KRTAP4-9Q9BYQ8 210 aa7.51□□□□□ -1.21
SDC1-205ENST00000447124 GPR98Q8WXG9 6306 aa7.51□□□□□ -1.21
SDC1-205ENST00000447124 MT1GP13640 62 aa7.5□□□□□ -1.21
SDC1-205ENST00000447124 A8MU10 97 aa7.47□□□□□ -1.21
SDC1-205ENST00000447124 A0A1B0GU69 56 aa7.46□□□□□ -1.22
SDC1-205ENST00000447124 SMIM26A0A096LP01 95 aa7.43□□□□□ -1.22
SDC1-205ENST00000447124 MT1MQ8N339 61 aa7.38□□□□□ -1.23
SDC1-205ENST00000447124 MT1LQ93083 61 aa7.38□□□□□ -1.23
SDC1-205ENST00000447124 C10orf95Q9H7T3 257 aa7.37□□□□□ -1.23
SDC1-205ENST00000447124 PP632Q6XCG6 107 aa7.36□□□□□ -1.23
SDC1-205ENST00000447124 LCE3AQ5TA76 89 aa7.33□□□□□ -1.24
SDC1-205ENST00000447124 ANAPC13Q9BS18 74 aa7.31□□□□□ -1.24
SDC1-205ENST00000447124 LCE1DQ5T752 114 aa7.3□□□□□ -1.24
SDC1-205ENST00000447124 TNP1P09430 55 aa7.27□□□□□ -1.25
SDC1-205ENST00000447124 KRTAP4-3Q9BYR4 195 aa7.27□□□□□ -1.25
SDC1-205ENST00000447124 CCDC179H3BU77 68 aa7.26□□□□□ -1.25
SDC1-205ENST00000447124 HMCN1Q96RW7 5635 aa7.25□□□□□ -1.25
SDC1-205ENST00000447124 LCE4AQ5TA78 99 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms