RNA–Protein interactions for RNA: ENST00000442510.6

PTPRC-209, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRC, Length 5,164 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-209ENST00000442510 KRTAP10-12P60413 245 aa2.22□□□□□ -2.05
PTPRC-209ENST00000442510 KRTAP10-5P60370 271 aa2.21□□□□□ -2.06
PTPRC-209ENST00000442510 LORP23490 312 aaPredicted RBP2.21□□□□□ -2.06
PTPRC-209ENST00000442510 CSMD3Q7Z407 3707 aa2.2□□□□□ -2.06
PTPRC-209ENST00000442510 KRTAP21-3Q3LHN1 58 aa2.16□□□□□ -2.06
PTPRC-209ENST00000442510 LCE2CQ5TA81 110 aa2.15□□□□□ -2.07
PTPRC-209ENST00000442510 DNHD1Q96M86 4753 aa2.15□□□□□ -2.07
PTPRC-209ENST00000442510 TRRAPQ9Y4A5 3859 aa2.14□□□□□ -2.07
PTPRC-209ENST00000442510 ANK3Q12955 4377 aaKnown RBP2.11□□□□□ -2.07
PTPRC-209ENST00000442510 KRTAP12-4P60329 112 aa2.11□□□□□ -2.07
PTPRC-209ENST00000442510 KRTAP5-3Q6L8H2 238 aa2.11□□□□□ -2.07
PTPRC-209ENST00000442510 KRTAP4-5Q9BYR2 181 aa2.1□□□□□ -2.07
PTPRC-209ENST00000442510 KRTAP9-8Q9BYQ0 159 aa2.1□□□□□ -2.07
PTPRC-209ENST00000442510 KRTAP8-1Q8IUC2 63 aa2.09□□□□□ -2.07
PTPRC-209ENST00000442510 MT3P25713 68 aa2.08□□□□□ -2.08
PTPRC-209ENST00000442510 ANK2Q01484 3957 aa2.08□□□□□ -2.08
PTPRC-209ENST00000442510 CRCT1Q9UGL9 99 aa2.07□□□□□ -2.08
PTPRC-209ENST00000442510 KRTAP19-4Q3LI73 84 aa2.06□□□□□ -2.08
PTPRC-209ENST00000442510 LCE3CQ5T5A8 94 aa2.04□□□□□ -2.08
PTPRC-209ENST00000442510 LYSTQ99698 3801 aa2.04□□□□□ -2.08
PTPRC-209ENST00000442510 KRTAP10-4P60372 401 aaPredicted RBP2.02□□□□□ -2.09
PTPRC-209ENST00000442510 PRKDCP78527 4128 aaKnown RBP2□□□□□ -2.09
PTPRC-209ENST00000442510 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.99□□□□□ -2.09
PTPRC-209ENST00000442510 KRTAP4-8Q9BYQ9 185 aa1.98□□□□□ -2.09
PTPRC-209ENST00000442510 CMYA5Q8N3K9 4069 aa1.97□□□□□ -2.09
PTPRC-209ENST00000442510 DNAH8Q96JB1 4490 aa1.96□□□□□ -2.1
PTPRC-209ENST00000442510 KRTAP9-2Q9BYQ4 174 aa1.95□□□□□ -2.1
PTPRC-209ENST00000442510 MT1HL1P0DM35 61 aa1.94□□□□□ -2.1
PTPRC-209ENST00000442510 HYDINQ4G0P3 5121 aa1.94□□□□□ -2.1
PTPRC-209ENST00000442510 KRTAP9-6A0A140TA67 174 aa1.93□□□□□ -2.1
PTPRC-209ENST00000442510 KRTAP4-12Q9BQ66 201 aa1.93□□□□□ -2.1
PTPRC-209ENST00000442510 PKHD1L1Q86WI1 4243 aa1.92□□□□□ -2.1
PTPRC-209ENST00000442510 KMT2CQ8NEZ4 4911 aaKnown RBP1.91□□□□□ -2.1
PTPRC-209ENST00000442510 KRTAP4-2Q9BYR5 136 aa1.9□□□□□ -2.11
PTPRC-209ENST00000442510 KRTAP4-8A0A0G2JLE6 195 aa1.9□□□□□ -2.11
PTPRC-209ENST00000442510 KRTAP19-5Q3LI72 72 aa1.89□□□□□ -2.11
PTPRC-209ENST00000442510 KRTAP4-7Q9BYR0 210 aa1.89□□□□□ -2.11
PTPRC-209ENST00000442510 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.89□□□□□ -2.11
PTPRC-209ENST00000442510 DNAH7Q8WXX0 4024 aa1.89□□□□□ -2.11
PTPRC-209ENST00000442510 PRM1P04553 51 aa1.88□□□□□ -2.11
PTPRC-209ENST00000442510 TNXBP22105 4242 aa1.88□□□□□ -2.11
PTPRC-209ENST00000442510 DNAH9Q9NYC9 4486 aa1.87□□□□□ -2.11
PTPRC-209ENST00000442510 DNAH11Q96DT5 4516 aa1.87□□□□□ -2.11
PTPRC-209ENST00000442510 HUWE1Q7Z6Z7 4374 aaKnown RBP1.87□□□□□ -2.11
PTPRC-209ENST00000442510 RYR3Q15413 4870 aa1.87□□□□□ -2.11
PTPRC-209ENST00000442510 FRAS1Q86XX4 4008 aa1.86□□□□□ -2.11
PTPRC-209ENST00000442510 SPRR2GQ9BYE4 73 aa1.86□□□□□ -2.11
PTPRC-209ENST00000442510 LCE3EQ5T5B0 92 aa1.86□□□□□ -2.11
PTPRC-209ENST00000442510 KRTAP9-9Q9BYP9 154 aa1.85□□□□□ -2.11
PTPRC-209ENST00000442510 KRTAP9-4Q9BYQ2 154 aa1.85□□□□□ -2.11
PTPRC-209ENST00000442510 PCLOQ9Y6V0 5065 aa1.85□□□□□ -2.11
PTPRC-209ENST00000442510 STARD9Q9P2P6 4700 aa1.85□□□□□ -2.11
PTPRC-209ENST00000442510 KMT2AQ03164 3969 aa1.84□□□□□ -2.11
PTPRC-209ENST00000442510 VPS13DQ5THJ4 4388 aa1.84□□□□□ -2.11
PTPRC-209ENST00000442510 DNAH3Q8TD57 4116 aa1.84□□□□□ -2.11
PTPRC-209ENST00000442510 LCE3DQ9BYE3 92 aa1.84□□□□□ -2.11
PTPRC-209ENST00000442510 SYNE1Q8NF91 8797 aaKnown RBP1.83□□□□□ -2.12
PTPRC-209ENST00000442510 FAT1Q14517 4588 aa1.82□□□□□ -2.12
PTPRC-209ENST00000442510 KRTAP19-1Q8IUB9 90 aa1.82□□□□□ -2.12
PTPRC-209ENST00000442510 DNAH10Q8IVF4 4471 aa1.82□□□□□ -2.12
PTPRC-209ENST00000442510 EPPK1P58107 5090 aaKnown RBP1.82□□□□□ -2.12
PTPRC-209ENST00000442510 DNAH2Q9P225 4427 aa1.81□□□□□ -2.12
PTPRC-209ENST00000442510 PLECQ15149 4684 aaKnown RBP1.81□□□□□ -2.12
PTPRC-209ENST00000442510 SACSQ9NZJ4 4579 aa1.8□□□□□ -2.12
PTPRC-209ENST00000442510 KRTAP2-3P0C7H8 128 aa1.8□□□□□ -2.12
PTPRC-209ENST00000442510 KRTAP2-4Q9BYR9 128 aa1.8□□□□□ -2.12
PTPRC-209ENST00000442510 KRTAP2-1Q9BYU5 128 aa1.8□□□□□ -2.12
PTPRC-209ENST00000442510 KIAA1109Q2LD37 5005 aa1.8□□□□□ -2.12
PTPRC-209ENST00000442510 DNAH1Q9P2D7 4330 aa1.8□□□□□ -2.12
PTPRC-209ENST00000442510 LCE1AQ5T7P2 110 aa1.79□□□□□ -2.12
PTPRC-209ENST00000442510 LCE3BQ5TA77 95 aa1.79□□□□□ -2.12
PTPRC-209ENST00000442510 FSIP2Q5CZC0 6907 aa1.79□□□□□ -2.12
PTPRC-209ENST00000442510 RYR1P21817 5038 aa1.79□□□□□ -2.12
PTPRC-209ENST00000442510 PKHD1P08F94 4074 aa1.78□□□□□ -2.12
PTPRC-209ENST00000442510 RYR2Q92736 4967 aa1.78□□□□□ -2.12
PTPRC-209ENST00000442510 FAT2Q9NYQ8 4349 aa1.77□□□□□ -2.13
PTPRC-209ENST00000442510 DNAH17Q9UFH2 4485 aa1.77□□□□□ -2.13
PTPRC-209ENST00000442510 APOBP04114 4563 aaKnown RBP1.76□□□□□ -2.13
PTPRC-209ENST00000442510 KRTAP4-1Q9BYQ7 146 aa1.76□□□□□ -2.13
PTPRC-209ENST00000442510 KRTAP10-7P60409 375 aaPredicted RBP1.75□□□□□ -2.13
PTPRC-209ENST00000442510 LCE1EQ5T753 118 aa1.75□□□□□ -2.13
PTPRC-209ENST00000442510 HECTD4Q9Y4D8 3996 aa1.75□□□□□ -2.13
PTPRC-209ENST00000442510 DNAH5Q8TE73 4624 aa1.73□□□□□ -2.13
PTPRC-209ENST00000442510 DNAH6Q9C0G6 4158 aa1.73□□□□□ -2.13
PTPRC-209ENST00000442510 DYNC2H1Q8NCM8 4307 aaKnown RBP1.73□□□□□ -2.13
PTPRC-209ENST00000442510 KRTAP2-2Q9BYT5 123 aa1.73□□□□□ -2.13
PTPRC-209ENST00000442510 KRTAP4-9Q9BYQ8 210 aa1.72□□□□□ -2.13
PTPRC-209ENST00000442510 BIRC6Q9NR09 4857 aa1.72□□□□□ -2.13
PTPRC-209ENST00000442510 KRTAP5-9P26371 169 aa1.71□□□□□ -2.13
PTPRC-209ENST00000442510 HERC2O95714 4834 aa1.71□□□□□ -2.14
PTPRC-209ENST00000442510 MT1HP80294 61 aa1.71□□□□□ -2.14
PTPRC-209ENST00000442510 MT2AP02795 61 aa1.7□□□□□ -2.14
PTPRC-209ENST00000442510 OBSCNQ5VST9 7968 aa1.7□□□□□ -2.14
PTPRC-209ENST00000442510 UBR4Q5T4S7 5183 aa1.69□□□□□ -2.14
PTPRC-209ENST00000442510 KRTAP5-2Q701N4 177 aa1.69□□□□□ -2.14
PTPRC-209ENST00000442510 MYCBP2O75592 4640 aa1.68□□□□□ -2.14
PTPRC-209ENST00000442510 VPS13BQ7Z7G8 4022 aa1.68□□□□□ -2.14
PTPRC-209ENST00000442510 MT1GP13640 62 aa1.68□□□□□ -2.14
PTPRC-209ENST00000442510 MT1FP04733 61 aa1.68□□□□□ -2.14
PTPRC-209ENST00000442510 MT1XP80297 61 aa1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 152.5 ms