RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 RYR3Q15413 4870 aa7.04□□□□□ -1.28
HERPUD1-204ENST00000439977 KRTAP10-8P60410 259 aa7.02□□□□□ -1.29
HERPUD1-204ENST00000439977 KRTAP17-1Q9BYP8 105 aa7.01□□□□□ -1.29
HERPUD1-204ENST00000439977 LINC01554Q52M75 96 aa7.01□□□□□ -1.29
HERPUD1-204ENST00000439977 KIAA1109Q2LD37 5005 aa7.01□□□□□ -1.29
HERPUD1-204ENST00000439977 LPAP08519 4548 aa7□□□□□ -1.29
HERPUD1-204ENST00000439977 CRIPTQ9P021 101 aa6.98□□□□□ -1.29
HERPUD1-204ENST00000439977 XP32Q5T750 250 aa6.97□□□□□ -1.29
HERPUD1-204ENST00000439977 KRTAP3-3Q9BYR6 98 aa6.96□□□□□ -1.3
HERPUD1-204ENST00000439977 RPL37P61927 97 aaKnown RBP6.96□□□□□ -1.3
HERPUD1-204ENST00000439977 RYR1P21817 5038 aa6.94□□□□□ -1.3
HERPUD1-204ENST00000439977 A0A0D9SG42 100 aa6.94□□□□□ -1.3
HERPUD1-204ENST00000439977 KRTAP10-6P60371 365 aaPredicted RBP6.9□□□□□ -1.3
HERPUD1-204ENST00000439977 KRTAP13-4Q3LI77 160 aa6.9□□□□□ -1.3
HERPUD1-204ENST00000439977 LRP2P98164 4655 aa6.89□□□□□ -1.31
HERPUD1-204ENST00000439977 S4R3F8 94 aa6.88□□□□□ -1.31
HERPUD1-204ENST00000439977 K7ERS5 55 aa6.86□□□□□ -1.31
HERPUD1-204ENST00000439977 KRTAP3-2Q9BYR7 98 aa6.85□□□□□ -1.31
HERPUD1-204ENST00000439977 P0C880 135 aa6.84□□□□□ -1.31
HERPUD1-204ENST00000439977 MT1HL1P0DM35 61 aa6.83□□□□□ -1.32
HERPUD1-204ENST00000439977 KRTAP25-1Q3LHN0 102 aa6.83□□□□□ -1.32
HERPUD1-204ENST00000439977 EPPK1P58107 5090 aaKnown RBP6.81□□□□□ -1.32
HERPUD1-204ENST00000439977 ABCA13Q86UQ4 5058 aa6.81□□□□□ -1.32
HERPUD1-204ENST00000439977 H3BS24 57 aa6.78□□□□□ -1.32
HERPUD1-204ENST00000439977 ROMO1P60602 79 aa6.72□□□□□ -1.33
HERPUD1-204ENST00000439977 KRTAP12-2P59991 146 aa6.67□□□□□ -1.34
HERPUD1-204ENST00000439977 SPINT4Q6UDR6 99 aa6.67□□□□□ -1.34
HERPUD1-204ENST00000439977 KRTAP4-5Q9BYR2 181 aa6.66□□□□□ -1.34
HERPUD1-204ENST00000439977 C10orf95Q9H7T3 257 aa6.65□□□□□ -1.34
HERPUD1-204ENST00000439977 TPRXLQ17RH7 258 aa6.62□□□□□ -1.35
HERPUD1-204ENST00000439977 KRTAP12-1P59990 96 aa6.57□□□□□ -1.36
HERPUD1-204ENST00000439977 MUC2Q02817 5179 aa6.52□□□□□ -1.37
HERPUD1-204ENST00000439977 M0QZ58 72 aa6.48□□□□□ -1.37
HERPUD1-204ENST00000439977 KRTAP4-1Q9BYQ7 146 aa6.44□□□□□ -1.38
HERPUD1-204ENST00000439977 R4GN34 69 aa6.44□□□□□ -1.38
HERPUD1-204ENST00000439977 MUC17Q685J3 4493 aa6.43□□□□□ -1.38
HERPUD1-204ENST00000439977 LORP23490 312 aaPredicted RBP6.43□□□□□ -1.38
HERPUD1-204ENST00000439977 HERC2O95714 4834 aa6.42□□□□□ -1.38
HERPUD1-204ENST00000439977 J3QL48 77 aa6.39□□□□□ -1.39
HERPUD1-204ENST00000439977 SEC61BP60468 96 aaKnown RBP6.39□□□□□ -1.39
HERPUD1-204ENST00000439977 HERC1Q15751 4861 aa6.23□□□□□ -1.41
HERPUD1-204ENST00000439977 KRTAP19-2Q3LHN2 52 aa6.22□□□□□ -1.41
HERPUD1-204ENST00000439977 KRTAP15-1Q3LI76 137 aa6.22□□□□□ -1.41
HERPUD1-204ENST00000439977 NDUFAF8A1L188 74 aa6.19□□□□□ -1.42
HERPUD1-204ENST00000439977 FAT4Q6V0I7 4981 aa6.17□□□□□ -1.42
HERPUD1-204ENST00000439977 PCLOQ9Y6V0 5065 aa6.17□□□□□ -1.42
HERPUD1-204ENST00000439977 CAMK2N1Q7Z7J9 78 aa6.14□□□□□ -1.43
HERPUD1-204ENST00000439977 BIRC6Q9NR09 4857 aa6.07□□□□□ -1.44
HERPUD1-204ENST00000439977 FLGP20930 4061 aaPredicted RBP6.07□□□□□ -1.44
HERPUD1-204ENST00000439977 RNF213Q63HN8 5207 aa6.04□□□□□ -1.44
HERPUD1-204ENST00000439977 HMCN2Q8NDA2 5059 aa6.02□□□□□ -1.45
HERPUD1-204ENST00000439977 PLAC4Q8WY50 150 aa5.99□□□□□ -1.45
HERPUD1-204ENST00000439977 UBR4Q5T4S7 5183 aa5.93□□□□□ -1.46
HERPUD1-204ENST00000439977 LCE2CQ5TA81 110 aa5.87□□□□□ -1.47
HERPUD1-204ENST00000439977 M0R2T5 61 aa5.87□□□□□ -1.47
HERPUD1-204ENST00000439977 PP632Q6XCG6 107 aa5.84□□□□□ -1.47
HERPUD1-204ENST00000439977 TNP1P09430 55 aa5.83□□□□□ -1.48
HERPUD1-204ENST00000439977 KRTAP19-1Q8IUB9 90 aa5.76□□□□□ -1.49
HERPUD1-204ENST00000439977 MT1HP80294 61 aa5.72□□□□□ -1.49
HERPUD1-204ENST00000439977 A0A0A0MQY5 61 aa5.71□□□□□ -1.5
HERPUD1-204ENST00000439977 SPRR2GQ9BYE4 73 aa5.71□□□□□ -1.5
HERPUD1-204ENST00000439977 LUZP6Q538Z0 58 aa5.71□□□□□ -1.5
HERPUD1-204ENST00000439977 KRTAP10-10P60014 251 aa5.7□□□□□ -1.5
HERPUD1-204ENST00000439977 MT1FP04733 61 aa5.67□□□□□ -1.5
HERPUD1-204ENST00000439977 MT2AP02795 61 aa5.64□□□□□ -1.51
HERPUD1-204ENST00000439977 KRTAP9-8Q9BYQ0 159 aa5.59□□□□□ -1.51
HERPUD1-204ENST00000439977 LCE3AQ5TA76 89 aa5.58□□□□□ -1.52
HERPUD1-204ENST00000439977 KRTAP23-1A1A580 65 aa5.56□□□□□ -1.52
HERPUD1-204ENST00000439977 SPRR5A0A1B0GTR4 108 aa5.45□□□□□ -1.54
HERPUD1-204ENST00000439977 MT1BP07438 61 aa5.45□□□□□ -1.54
HERPUD1-204ENST00000439977 LCE2DQ5TA82 110 aaPredicted RBP5.45□□□□□ -1.54
HERPUD1-204ENST00000439977 KRTAP10-5P60370 271 aa5.43□□□□□ -1.54
HERPUD1-204ENST00000439977 USH2AO75445 5202 aa5.43□□□□□ -1.54
HERPUD1-204ENST00000439977 KRTAP19-8Q3LI54 63 aa5.42□□□□□ -1.54
HERPUD1-204ENST00000439977 MT1XP80297 61 aa5.42□□□□□ -1.54
HERPUD1-204ENST00000439977 KRTAP10-7P60409 375 aaPredicted RBP5.34□□□□□ -1.55
HERPUD1-204ENST00000439977 KRTAP8-1Q8IUC2 63 aa5.33□□□□□ -1.56
HERPUD1-204ENST00000439977 KRTAP9-3Q9BYQ3 159 aa5.33□□□□□ -1.56
HERPUD1-204ENST00000439977 KRTAP10-12P60413 245 aa5.32□□□□□ -1.56
HERPUD1-204ENST00000439977 KMT2DO14686 5537 aa5.31□□□□□ -1.56
HERPUD1-204ENST00000439977 KRTAP12-3P60328 96 aa5.28□□□□□ -1.56
HERPUD1-204ENST00000439977 LCE2BO14633 110 aa5.18□□□□□ -1.58
HERPUD1-204ENST00000439977 PRO2289Q9P1D8 64 aa5.15□□□□□ -1.58
HERPUD1-204ENST00000439977 KRTAP19-5Q3LI72 72 aa5.09□□□□□ -1.59
HERPUD1-204ENST00000439977 KRTAP4-8A0A0G2JLE6 195 aa5.08□□□□□ -1.6
HERPUD1-204ENST00000439977 KRTAP4-8Q9BYQ9 185 aa5.08□□□□□ -1.6
HERPUD1-204ENST00000439977 FSIP2Q5CZC0 6907 aa5.03□□□□□ -1.6
HERPUD1-204ENST00000439977 LCE2AQ5TA79 106 aaPredicted RBP4.98□□□□□ -1.61
HERPUD1-204ENST00000439977 LCE3CQ5T5A8 94 aa4.95□□□□□ -1.62
HERPUD1-204ENST00000439977 KRTAP4-7Q9BYR0 210 aa4.89□□□□□ -1.63
HERPUD1-204ENST00000439977 KRTAP9-6A8MVA2 160 aa4.86□□□□□ -1.63
HERPUD1-204ENST00000439977 KRTAP19-7Q3SYF9 63 aa4.83□□□□□ -1.64
HERPUD1-204ENST00000439977 SSPOA2VEC9 5147 aa4.82□□□□□ -1.64
HERPUD1-204ENST00000439977 INE1O15225 51 aa4.77□□□□□ -1.65
HERPUD1-204ENST00000439977 MT1LQ93083 61 aa4.67□□□□□ -1.66
HERPUD1-204ENST00000439977 MT1EP04732 61 aa4.67□□□□□ -1.66
HERPUD1-204ENST00000439977 MUC12Q9UKN1 5478 aa4.66□□□□□ -1.66
HERPUD1-204ENST00000439977 FCGBPQ9Y6R7 5405 aaPredicted RBP4.66□□□□□ -1.66
HERPUD1-204ENST00000439977 DSTQ03001 7570 aaKnown RBP4.58□□□□□ -1.68
HERPUD1-204ENST00000439977 KRTAP4-3Q9BYR4 195 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms