RNA–Protein interactions for RNA: ENST00000439211.6

DHFR-201, Transcript of dihydrofolate reductase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DHFR, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DHFR-201ENST00000439211 HYDINQ4G0P3 5121 aa8.17□□□□□ -1.1
DHFR-201ENST00000439211 KRTAP13-4Q3LI77 160 aa8.17□□□□□ -1.1
DHFR-201ENST00000439211 A0A1B0GVY2 172 aa8.12□□□□□ -1.11
DHFR-201ENST00000439211 PLAC4Q8WY50 150 aa8.1□□□□□ -1.11
DHFR-201ENST00000439211 KRTAP12-2P59991 146 aa8.08□□□□□ -1.12
DHFR-201ENST00000439211 PKHD1P08F94 4074 aa8.05□□□□□ -1.12
DHFR-201ENST00000439211 KRTAP10-6P60371 365 aaPredicted RBP8.04□□□□□ -1.12
DHFR-201ENST00000439211 DYNC1H1Q14204 4646 aaKnown RBP8.02□□□□□ -1.13
DHFR-201ENST00000439211 SEC61BP60468 96 aaKnown RBP8□□□□□ -1.13
DHFR-201ENST00000439211 KRTAP10-4P60372 401 aaPredicted RBP7.97□□□□□ -1.13
DHFR-201ENST00000439211 XP32Q5T750 250 aa7.97□□□□□ -1.13
DHFR-201ENST00000439211 FAT2Q9NYQ8 4349 aa7.97□□□□□ -1.13
DHFR-201ENST00000439211 PKD1P98161 4303 aa7.95□□□□□ -1.14
DHFR-201ENST00000439211 KRTAP10-8P60410 259 aa7.92□□□□□ -1.14
DHFR-201ENST00000439211 J3QL48 77 aa7.91□□□□□ -1.14
DHFR-201ENST00000439211 KRTAP12-1P59990 96 aa7.91□□□□□ -1.14
DHFR-201ENST00000439211 SACSQ9NZJ4 4579 aa7.91□□□□□ -1.14
DHFR-201ENST00000439211 MYCBP2O75592 4640 aa7.89□□□□□ -1.15
DHFR-201ENST00000439211 KRTAP3-2Q9BYR7 98 aa7.85□□□□□ -1.15
DHFR-201ENST00000439211 M0QZ58 72 aa7.83□□□□□ -1.16
DHFR-201ENST00000439211 LRP1Q07954 4544 aaKnown RBP7.82□□□□□ -1.16
DHFR-201ENST00000439211 KRTAP3-3Q9BYR6 98 aa7.8□□□□□ -1.16
DHFR-201ENST00000439211 R4GN34 69 aa7.79□□□□□ -1.16
DHFR-201ENST00000439211 CAMK2N1Q7Z7J9 78 aa7.78□□□□□ -1.16
DHFR-201ENST00000439211 APOBP04114 4563 aaKnown RBP7.76□□□□□ -1.17
DHFR-201ENST00000439211 KMT2CQ8NEZ4 4911 aaKnown RBP7.62□□□□□ -1.19
DHFR-201ENST00000439211 RYR2Q92736 4967 aa7.62□□□□□ -1.19
DHFR-201ENST00000439211 FAT3Q8TDW7 4589 aa7.62□□□□□ -1.19
DHFR-201ENST00000439211 MT1HL1P0DM35 61 aa7.59□□□□□ -1.19
DHFR-201ENST00000439211 KIAA1109Q2LD37 5005 aa7.57□□□□□ -1.2
DHFR-201ENST00000439211 HSPG2P98160 4391 aa7.54□□□□□ -1.2
DHFR-201ENST00000439211 M0R2T5 61 aa7.53□□□□□ -1.2
DHFR-201ENST00000439211 KRTAP17-1Q9BYP8 105 aa7.5□□□□□ -1.21
DHFR-201ENST00000439211 PP632Q6XCG6 107 aa7.5□□□□□ -1.21
DHFR-201ENST00000439211 RYR3Q15413 4870 aa7.49□□□□□ -1.21
DHFR-201ENST00000439211 PKHD1L1Q86WI1 4243 aa7.48□□□□□ -1.21
DHFR-201ENST00000439211 RYR1P21817 5038 aa7.48□□□□□ -1.21
DHFR-201ENST00000439211 KRTAP4-5Q9BYR2 181 aa7.45□□□□□ -1.22
DHFR-201ENST00000439211 LRP2P98164 4655 aa7.45□□□□□ -1.22
DHFR-201ENST00000439211 TNXBP22105 4242 aa7.34□□□□□ -1.23
DHFR-201ENST00000439211 PRO2289Q9P1D8 64 aa7.28□□□□□ -1.24
DHFR-201ENST00000439211 LPAP08519 4548 aa7.27□□□□□ -1.25
DHFR-201ENST00000439211 LORP23490 312 aaPredicted RBP7.23□□□□□ -1.25
DHFR-201ENST00000439211 TNP1P09430 55 aa7.22□□□□□ -1.25
DHFR-201ENST00000439211 EPPK1P58107 5090 aaKnown RBP7.13□□□□□ -1.27
DHFR-201ENST00000439211 KRTAP4-1Q9BYQ7 146 aa7.1□□□□□ -1.27
DHFR-201ENST00000439211 ABCA13Q86UQ4 5058 aa7.06□□□□□ -1.28
DHFR-201ENST00000439211 INE1O15225 51 aa7□□□□□ -1.29
DHFR-201ENST00000439211 HERC2O95714 4834 aa6.95□□□□□ -1.3
DHFR-201ENST00000439211 MUC2Q02817 5179 aa6.87□□□□□ -1.31
DHFR-201ENST00000439211 SPRR5A0A1B0GTR4 108 aa6.76□□□□□ -1.33
DHFR-201ENST00000439211 KRTAP10-10P60014 251 aa6.73□□□□□ -1.33
DHFR-201ENST00000439211 MUC17Q685J3 4493 aa6.67□□□□□ -1.34
DHFR-201ENST00000439211 KRTAP23-1A1A580 65 aa6.65□□□□□ -1.34
DHFR-201ENST00000439211 KRTAP19-2Q3LHN2 52 aa6.64□□□□□ -1.35
DHFR-201ENST00000439211 BIRC6Q9NR09 4857 aa6.62□□□□□ -1.35
DHFR-201ENST00000439211 FAT4Q6V0I7 4981 aa6.57□□□□□ -1.36
DHFR-201ENST00000439211 HERC1Q15751 4861 aa6.55□□□□□ -1.36
DHFR-201ENST00000439211 LCE3AQ5TA76 89 aa6.5□□□□□ -1.37
DHFR-201ENST00000439211 FLGP20930 4061 aaPredicted RBP6.49□□□□□ -1.37
DHFR-201ENST00000439211 RNF213Q63HN8 5207 aa6.43□□□□□ -1.38
DHFR-201ENST00000439211 SPRR2GQ9BYE4 73 aa6.4□□□□□ -1.38
DHFR-201ENST00000439211 PCLOQ9Y6V0 5065 aa6.4□□□□□ -1.39
DHFR-201ENST00000439211 MT1HP80294 61 aa6.4□□□□□ -1.39
DHFR-201ENST00000439211 KRTAP19-1Q8IUB9 90 aa6.39□□□□□ -1.39
DHFR-201ENST00000439211 LCE2CQ5TA81 110 aa6.36□□□□□ -1.39
DHFR-201ENST00000439211 MT1FP04733 61 aa6.33□□□□□ -1.4
DHFR-201ENST00000439211 MT2AP02795 61 aa6.32□□□□□ -1.4
DHFR-201ENST00000439211 HMCN2Q8NDA2 5059 aa6.32□□□□□ -1.4
DHFR-201ENST00000439211 UBR4Q5T4S7 5183 aa6.24□□□□□ -1.41
DHFR-201ENST00000439211 KRTAP12-3P60328 96 aa6.22□□□□□ -1.41
DHFR-201ENST00000439211 KRTAP10-12P60413 245 aa6.21□□□□□ -1.41
DHFR-201ENST00000439211 KRTAP9-8Q9BYQ0 159 aa6.13□□□□□ -1.43
DHFR-201ENST00000439211 KRTAP8-1Q8IUC2 63 aa6.09□□□□□ -1.43
DHFR-201ENST00000439211 MT1BP07438 61 aa6.04□□□□□ -1.44
DHFR-201ENST00000439211 MT1XP80297 61 aa6.04□□□□□ -1.44
DHFR-201ENST00000439211 KRTAP10-5P60370 271 aa6.03□□□□□ -1.44
DHFR-201ENST00000439211 KRTAP19-8Q3LI54 63 aa6.03□□□□□ -1.44
DHFR-201ENST00000439211 KRTAP10-7P60409 375 aaPredicted RBP6□□□□□ -1.45
DHFR-201ENST00000439211 CRCT1Q9UGL9 99 aa5.92□□□□□ -1.46
DHFR-201ENST00000439211 KRTAP9-3Q9BYQ3 159 aa5.86□□□□□ -1.47
DHFR-201ENST00000439211 KRTAP19-5Q3LI72 72 aa5.83□□□□□ -1.48
DHFR-201ENST00000439211 USH2AO75445 5202 aa5.8□□□□□ -1.48
DHFR-201ENST00000439211 OBSCNQ5VST9 7968 aa5.78□□□□□ -1.48
DHFR-201ENST00000439211 LCE3CQ5T5A8 94 aa5.74□□□□□ -1.49
DHFR-201ENST00000439211 FSIP2Q5CZC0 6907 aa5.73□□□□□ -1.49
DHFR-201ENST00000439211 KRTAP4-8A0A0G2JLE6 195 aa5.72□□□□□ -1.49
DHFR-201ENST00000439211 KRTAP4-8Q9BYQ9 185 aa5.72□□□□□ -1.49
DHFR-201ENST00000439211 KMT2DO14686 5537 aa5.72□□□□□ -1.49
DHFR-201ENST00000439211 LCE2BO14633 110 aa5.7□□□□□ -1.5
DHFR-201ENST00000439211 SYNE1Q8NF91 8797 aaKnown RBP5.64□□□□□ -1.51
DHFR-201ENST00000439211 KRTAP4-7Q9BYR0 210 aa5.52□□□□□ -1.53
DHFR-201ENST00000439211 LCE2AQ5TA79 106 aaPredicted RBP5.48□□□□□ -1.53
DHFR-201ENST00000439211 KRTAP12-4P60329 112 aa5.42□□□□□ -1.54
DHFR-201ENST00000439211 KRTAP9-6A8MVA2 160 aa5.42□□□□□ -1.54
DHFR-201ENST00000439211 KRTAP2-3P0C7H8 128 aa5.39□□□□□ -1.55
DHFR-201ENST00000439211 KRTAP2-4Q9BYR9 128 aa5.39□□□□□ -1.55
DHFR-201ENST00000439211 KRTAP2-1Q9BYU5 128 aa5.39□□□□□ -1.55
DHFR-201ENST00000439211 KRTAP19-7Q3SYF9 63 aa5.33□□□□□ -1.56
DHFR-201ENST00000439211 MT1LQ93083 61 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms