RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 KRTAP3-1Q9BYR8 98 aa4.66□□□□□ -1.66
USP40-203ENST00000427112 RYR2Q92736 4967 aa4.66□□□□□ -1.66
USP40-203ENST00000427112 SACSQ9NZJ4 4579 aa4.65□□□□□ -1.66
USP40-203ENST00000427112 APOBP04114 4563 aaKnown RBP4.64□□□□□ -1.67
USP40-203ENST00000427112 BIRC6Q9NR09 4857 aa4.61□□□□□ -1.67
USP40-203ENST00000427112 HSPG2P98160 4391 aa4.6□□□□□ -1.67
USP40-203ENST00000427112 RPL37P61927 97 aaKnown RBP4.6□□□□□ -1.67
USP40-203ENST00000427112 H1FX-AS1Q4G0G2 97 aa4.6□□□□□ -1.67
USP40-203ENST00000427112 EPPK1P58107 5090 aaKnown RBP4.57□□□□□ -1.68
USP40-203ENST00000427112 LPAP08519 4548 aa4.56□□□□□ -1.68
USP40-203ENST00000427112 P0C880 135 aa4.56□□□□□ -1.68
USP40-203ENST00000427112 KIAA1109Q2LD37 5005 aa4.56□□□□□ -1.68
USP40-203ENST00000427112 COX6B2Q6YFQ2 88 aa4.56□□□□□ -1.68
USP40-203ENST00000427112 KRTAP10-8P60410 259 aa4.55□□□□□ -1.68
USP40-203ENST00000427112 KRTAP13-4Q3LI77 160 aa4.51□□□□□ -1.69
USP40-203ENST00000427112 PKHD1L1Q86WI1 4243 aa4.51□□□□□ -1.69
USP40-203ENST00000427112 LRP2P98164 4655 aa4.51□□□□□ -1.69
USP40-203ENST00000427112 RYR1P21817 5038 aa4.5□□□□□ -1.69
USP40-203ENST00000427112 Q5VSD8 79 aa4.48□□□□□ -1.69
USP40-203ENST00000427112 KRTAP17-1Q9BYP8 105 aa4.45□□□□□ -1.7
USP40-203ENST00000427112 HERC2O95714 4834 aa4.45□□□□□ -1.7
USP40-203ENST00000427112 KRTAP10-4P60372 401 aaPredicted RBP4.45□□□□□ -1.7
USP40-203ENST00000427112 S4R3F8 94 aa4.42□□□□□ -1.7
USP40-203ENST00000427112 A0A1B0GVY2 172 aa4.42□□□□□ -1.7
USP40-203ENST00000427112 XP32Q5T750 250 aa4.41□□□□□ -1.7
USP40-203ENST00000427112 CAMK2N1Q7Z7J9 78 aa4.4□□□□□ -1.7
USP40-203ENST00000427112 KRTAP10-6P60371 365 aaPredicted RBP4.39□□□□□ -1.71
USP40-203ENST00000427112 KRTAP3-3Q9BYR6 98 aa4.39□□□□□ -1.71
USP40-203ENST00000427112 ABCA13Q86UQ4 5058 aa4.39□□□□□ -1.71
USP40-203ENST00000427112 MUC2Q02817 5179 aa4.38□□□□□ -1.71
USP40-203ENST00000427112 TPRXLQ17RH7 258 aa4.37□□□□□ -1.71
USP40-203ENST00000427112 KRTAP12-2P59991 146 aa4.36□□□□□ -1.71
USP40-203ENST00000427112 RPS29P62273 56 aaKnown RBP4.35□□□□□ -1.71
USP40-203ENST00000427112 TNXBP22105 4242 aa4.34□□□□□ -1.71
USP40-203ENST00000427112 KRTAP3-2Q9BYR7 98 aa4.34□□□□□ -1.71
USP40-203ENST00000427112 R4GN34 69 aa4.32□□□□□ -1.72
USP40-203ENST00000427112 M0QZ58 72 aa4.31□□□□□ -1.72
USP40-203ENST00000427112 PLAC4Q8WY50 150 aa4.31□□□□□ -1.72
USP40-203ENST00000427112 PCLOQ9Y6V0 5065 aa4.3□□□□□ -1.72
USP40-203ENST00000427112 KRTAP4-5Q9BYR2 181 aa4.29□□□□□ -1.72
USP40-203ENST00000427112 SEC61BP60468 96 aaKnown RBP4.28□□□□□ -1.72
USP40-203ENST00000427112 KRTAP12-1P59990 96 aa4.22□□□□□ -1.73
USP40-203ENST00000427112 MT1HL1P0DM35 61 aa4.22□□□□□ -1.73
USP40-203ENST00000427112 LORP23490 312 aaPredicted RBP4.22□□□□□ -1.73
USP40-203ENST00000427112 KRTAP15-1Q3LI76 137 aa4.16□□□□□ -1.74
USP40-203ENST00000427112 FAT4Q6V0I7 4981 aa4.14□□□□□ -1.75
USP40-203ENST00000427112 J3QL48 77 aa4.14□□□□□ -1.75
USP40-203ENST00000427112 KRTAP4-1Q9BYQ7 146 aa4.1□□□□□ -1.75
USP40-203ENST00000427112 RNF213Q63HN8 5207 aa4.1□□□□□ -1.75
USP40-203ENST00000427112 HERC1Q15751 4861 aa4.07□□□□□ -1.76
USP40-203ENST00000427112 MUC17Q685J3 4493 aa3.95□□□□□ -1.78
USP40-203ENST00000427112 UBR4Q5T4S7 5183 aa3.92□□□□□ -1.78
USP40-203ENST00000427112 M0R2T5 61 aa3.92□□□□□ -1.78
USP40-203ENST00000427112 TNP1P09430 55 aa3.92□□□□□ -1.78
USP40-203ENST00000427112 HMCN2Q8NDA2 5059 aa3.91□□□□□ -1.78
USP40-203ENST00000427112 PP632Q6XCG6 107 aa3.85□□□□□ -1.79
USP40-203ENST00000427112 KRTAP19-2Q3LHN2 52 aa3.75□□□□□ -1.81
USP40-203ENST00000427112 FLGP20930 4061 aaPredicted RBP3.75□□□□□ -1.81
USP40-203ENST00000427112 USH2AO75445 5202 aa3.74□□□□□ -1.81
USP40-203ENST00000427112 PRO2289Q9P1D8 64 aa3.73□□□□□ -1.81
USP40-203ENST00000427112 KRTAP10-10P60014 251 aa3.72□□□□□ -1.81
USP40-203ENST00000427112 KMT2DO14686 5537 aa3.7□□□□□ -1.82
USP40-203ENST00000427112 FSIP2Q5CZC0 6907 aa3.65□□□□□ -1.82
USP40-203ENST00000427112 LCE3AQ5TA76 89 aa3.65□□□□□ -1.83
USP40-203ENST00000427112 KRTAP19-1Q8IUB9 90 aa3.59□□□□□ -1.83
USP40-203ENST00000427112 LCE2CQ5TA81 110 aa3.59□□□□□ -1.83
USP40-203ENST00000427112 MT1FP04733 61 aa3.58□□□□□ -1.84
USP40-203ENST00000427112 INE1O15225 51 aa3.56□□□□□ -1.84
USP40-203ENST00000427112 MT1HP80294 61 aa3.55□□□□□ -1.84
USP40-203ENST00000427112 MT2AP02795 61 aa3.53□□□□□ -1.84
USP40-203ENST00000427112 LCE2AQ5TA79 106 aaPredicted RBP3.53□□□□□ -1.85
USP40-203ENST00000427112 KRTAP9-2Q9BYQ4 174 aa3.51□□□□□ -1.85
USP40-203ENST00000427112 SPRR2GQ9BYE4 73 aa3.46□□□□□ -1.86
USP40-203ENST00000427112 KRTAP9-6A0A140TA67 174 aa3.45□□□□□ -1.86
USP40-203ENST00000427112 KRTAP10-7P60409 375 aaPredicted RBP3.45□□□□□ -1.86
USP40-203ENST00000427112 KRTAP9-8Q9BYQ0 159 aa3.43□□□□□ -1.86
USP40-203ENST00000427112 OBSCNQ5VST9 7968 aa3.42□□□□□ -1.86
USP40-203ENST00000427112 KRTAP10-12P60413 245 aa3.4□□□□□ -1.86
USP40-203ENST00000427112 LCE2DQ5TA82 110 aaPredicted RBP3.4□□□□□ -1.86
USP40-203ENST00000427112 KRTAP12-3P60328 96 aa3.4□□□□□ -1.87
USP40-203ENST00000427112 SYNE1Q8NF91 8797 aaKnown RBP3.4□□□□□ -1.87
USP40-203ENST00000427112 MT1XP80297 61 aa3.39□□□□□ -1.87
USP40-203ENST00000427112 MT1BP07438 61 aa3.39□□□□□ -1.87
USP40-203ENST00000427112 KRTAP10-5P60370 271 aa3.39□□□□□ -1.87
USP40-203ENST00000427112 KRTAP4-8A0A0G2JLE6 195 aa3.36□□□□□ -1.87
USP40-203ENST00000427112 KRTAP4-8Q9BYQ9 185 aa3.36□□□□□ -1.87
USP40-203ENST00000427112 DSTQ03001 7570 aaKnown RBP3.36□□□□□ -1.87
USP40-203ENST00000427112 SPRR5A0A1B0GTR4 108 aa3.34□□□□□ -1.87
USP40-203ENST00000427112 KRTAP4-7Q9BYR0 210 aa3.31□□□□□ -1.88
USP40-203ENST00000427112 CRCT1Q9UGL9 99 aa3.3□□□□□ -1.88
USP40-203ENST00000427112 KRTAP19-5Q3LI72 72 aa3.29□□□□□ -1.88
USP40-203ENST00000427112 KRTAP8-1Q8IUC2 63 aa3.28□□□□□ -1.88
USP40-203ENST00000427112 FCGBPQ9Y6R7 5405 aaPredicted RBP3.28□□□□□ -1.88
USP40-203ENST00000427112 KRTAP9-3Q9BYQ3 159 aa3.26□□□□□ -1.89
USP40-203ENST00000427112 KRTAP23-1A1A580 65 aa3.25□□□□□ -1.89
USP40-203ENST00000427112 LCE2BO14633 110 aa3.25□□□□□ -1.89
USP40-203ENST00000427112 KRTAP19-8Q3LI54 63 aa3.24□□□□□ -1.89
USP40-203ENST00000427112 MUC12Q9UKN1 5478 aa3.22□□□□□ -1.89
USP40-203ENST00000427112 KRTAP9-6A8MVA2 160 aa3.15□□□□□ -1.9
USP40-203ENST00000427112 LCE3CQ5T5A8 94 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms