RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 MT-ATP8P03928 68 aa5.15□□□□□ -1.58
USP4-204ENST00000416417 SMIM20Q8N5G0 67 aa5.14□□□□□ -1.59
USP4-204ENST00000416417 KRTAP10-5P60370 271 aa5.13□□□□□ -1.59
USP4-204ENST00000416417 UBL5Q9BZL1 73 aa5.13□□□□□ -1.59
USP4-204ENST00000416417 A0A087WVE0 104 aa5.11□□□□□ -1.59
USP4-204ENST00000416417 KLKP1Q107X0 134 aa5.11□□□□□ -1.59
USP4-204ENST00000416417 CCDC179H3BU77 68 aa5.07□□□□□ -1.6
USP4-204ENST00000416417 KRTAP20-1Q3LI63 56 aa5.06□□□□□ -1.6
USP4-204ENST00000416417 RPS28P62857 69 aaKnown RBP5.05□□□□□ -1.6
USP4-204ENST00000416417 IMUPQ9GZP8 106 aa5.04□□□□□ -1.6
USP4-204ENST00000416417 TP53AIP1Q9HCN2 124 aa5.04□□□□□ -1.6
USP4-204ENST00000416417 CYP4F30PQ9H0H9 118 aa5.03□□□□□ -1.6
USP4-204ENST00000416417 KMT2DO14686 5537 aa5.03□□□□□ -1.6
USP4-204ENST00000416417 KRTAP5-9P26371 169 aa5.02□□□□□ -1.61
USP4-204ENST00000416417 MDN1Q9NU22 5596 aa5.02□□□□□ -1.61
USP4-204ENST00000416417 FAM240AA0A1B0GVK7 77 aa5.02□□□□□ -1.61
USP4-204ENST00000416417 UQCRQO14949 82 aa4.97□□□□□ -1.61
USP4-204ENST00000416417 TRAV22A0A0B4J277 110 aa4.96□□□□□ -1.62
USP4-204ENST00000416417 ACYP1P07311 99 aa4.96□□□□□ -1.62
USP4-204ENST00000416417 CRIPTQ9P021 101 aa4.96□□□□□ -1.62
USP4-204ENST00000416417 LOC101927531A0A1B0GV80 90 aa4.93□□□□□ -1.62
USP4-204ENST00000416417 NDUFC1O43677 76 aa4.91□□□□□ -1.62
USP4-204ENST00000416417 COX7CP15954 63 aa4.91□□□□□ -1.62
USP4-204ENST00000416417 TMEM258P61165 79 aa4.91□□□□□ -1.62
USP4-204ENST00000416417 ADM2Q7Z4H4 148 aa4.91□□□□□ -1.62
USP4-204ENST00000416417 LINC00643Q86TS7 51 aa4.9□□□□□ -1.63
USP4-204ENST00000416417 SPRR2FQ96RM1 72 aa4.9□□□□□ -1.63
USP4-204ENST00000416417 H0Y9P7 68 aa4.89□□□□□ -1.63
USP4-204ENST00000416417 HIST1H4AP62805 103 aaKnown RBP4.88□□□□□ -1.63
USP4-204ENST00000416417 H0YAA0 97 aa4.87□□□□□ -1.63
USP4-204ENST00000416417 ATOX1O00244 68 aa4.87□□□□□ -1.63
USP4-204ENST00000416417 MT1XP80297 61 aa4.87□□□□□ -1.63
USP4-204ENST00000416417 KRTAP2-3P0C7H8 128 aa4.87□□□□□ -1.63
USP4-204ENST00000416417 SPRR2EP22531 72 aa4.87□□□□□ -1.63
USP4-204ENST00000416417 SPRR2BP35325 72 aa4.87□□□□□ -1.63
USP4-204ENST00000416417 SPRR2AP35326 72 aa4.87□□□□□ -1.63
USP4-204ENST00000416417 KRTAP2-4Q9BYR9 128 aa4.87□□□□□ -1.63
USP4-204ENST00000416417 A8MUN3 132 aa4.86□□□□□ -1.63
USP4-204ENST00000416417 PRO0628Q9UI54 55 aa4.85□□□□□ -1.63
USP4-204ENST00000416417 SERP2Q8N6R1 65 aa4.82□□□□□ -1.64
USP4-204ENST00000416417 PRO2289Q9P1D8 64 aa4.82□□□□□ -1.64
USP4-204ENST00000416417 KRTAP8-1Q8IUC2 63 aa4.81□□□□□ -1.64
USP4-204ENST00000416417 PLAC4Q8WY50 150 aa4.8□□□□□ -1.64
USP4-204ENST00000416417 LINC00208Q96KT6 92 aa4.8□□□□□ -1.64
USP4-204ENST00000416417 P0C880 135 aa4.79□□□□□ -1.64
USP4-204ENST00000416417 ATP5EP2Q5VTU8 51 aa4.78□□□□□ -1.64
USP4-204ENST00000416417 KRTAP4-8A0A0G2JLE6 195 aa4.77□□□□□ -1.65
USP4-204ENST00000416417 LCE1AQ5T7P2 110 aa4.77□□□□□ -1.65
USP4-204ENST00000416417 KRTAP4-8Q9BYQ9 185 aa4.77□□□□□ -1.65
USP4-204ENST00000416417 SERP1Q9Y6X1 66 aa4.77□□□□□ -1.65
USP4-204ENST00000416417 R4GN34 69 aa4.76□□□□□ -1.65
USP4-204ENST00000416417 SEC61GP60059 68 aa4.75□□□□□ -1.65
USP4-204ENST00000416417 M0QZ58 72 aa4.74□□□□□ -1.65
USP4-204ENST00000416417 V9GYY9 64 aa4.73□□□□□ -1.65
USP4-204ENST00000416417 SMIM26A0A096LP01 95 aa4.72□□□□□ -1.65
USP4-204ENST00000416417 KRTAP12-2P59991 146 aa4.72□□□□□ -1.65
USP4-204ENST00000416417 LINC01554Q52M75 96 aa4.72□□□□□ -1.65
USP4-204ENST00000416417 CYSTM1Q9H1C7 97 aa4.72□□□□□ -1.65
USP4-204ENST00000416417 SPRR2DP22532 72 aa4.7□□□□□ -1.66
USP4-204ENST00000416417 ATP5EP56381 51 aaPredicted RBP4.7□□□□□ -1.66
USP4-204ENST00000416417 KRTAP2-2Q9BYT5 123 aa4.7□□□□□ -1.66
USP4-204ENST00000416417 KRTAP2-1Q9BYU5 128 aa4.7□□□□□ -1.66
USP4-204ENST00000416417 OCR1Q9BZK8 76 aa4.7□□□□□ -1.66
USP4-204ENST00000416417 MP68P56378 58 aa4.69□□□□□ -1.66
USP4-204ENST00000416417 KRTAP10-7P60409 375 aaPredicted RBP4.67□□□□□ -1.66
USP4-204ENST00000416417 C20orf197Q8N268 126 aa4.67□□□□□ -1.66
USP4-204ENST00000416417 TRAV7A0A075B6U4 112 aa4.65□□□□□ -1.67
USP4-204ENST00000416417 H7BZZ5 65 aa4.65□□□□□ -1.67
USP4-204ENST00000416417 DMAC1Q96GE9 116 aa4.63□□□□□ -1.67
USP4-204ENST00000416417 KRTAP10-12P60413 245 aa4.59□□□□□ -1.67
USP4-204ENST00000416417 LCE3BQ5TA77 95 aa4.58□□□□□ -1.68
USP4-204ENST00000416417 BRK1Q8WUW1 75 aa4.57□□□□□ -1.68
USP4-204ENST00000416417 H3BPC8 53 aa4.56□□□□□ -1.68
USP4-204ENST00000416417 PMAIP1Q13794 54 aa4.56□□□□□ -1.68
USP4-204ENST00000416417 Q1T7F1 81 aa4.5□□□□□ -1.69
USP4-204ENST00000416417 ACYP2P14621 99 aa4.48□□□□□ -1.69
USP4-204ENST00000416417 SNURFQ9Y675 71 aa4.48□□□□□ -1.69
USP4-204ENST00000416417 LOC100996750A0A140TA64 210 aa4.44□□□□□ -1.7
USP4-204ENST00000416417 KRTAP4-6Q9BYQ5 205 aa4.44□□□□□ -1.7
USP4-204ENST00000416417 SPTSSBQ8NFR3 76 aa4.43□□□□□ -1.7
USP4-204ENST00000416417 CHKB-CPT1BH3BT56 60 aa4.42□□□□□ -1.7
USP4-204ENST00000416417 KRTAP13-4Q3LI77 160 aa4.42□□□□□ -1.7
USP4-204ENST00000416417 KTN1-AS1Q86SY8 53 aa4.4□□□□□ -1.71
USP4-204ENST00000416417 DSTQ03001 7570 aaKnown RBP4.37□□□□□ -1.71
USP4-204ENST00000416417 CAMK2N1Q7Z7J9 78 aa4.36□□□□□ -1.71
USP4-204ENST00000416417 KRTAP4-9Q9BYQ8 210 aa4.36□□□□□ -1.71
USP4-204ENST00000416417 KRTAP19-7Q3SYF9 63 aa4.36□□□□□ -1.71
USP4-204ENST00000416417 GPR98Q8WXG9 6306 aa4.35□□□□□ -1.71
USP4-204ENST00000416417 LCE5AQ5TCM9 118 aa4.33□□□□□ -1.72
USP4-204ENST00000416417 MT1EP04732 61 aa4.32□□□□□ -1.72
USP4-204ENST00000416417 KRTAP19-3Q7Z4W3 81 aa4.31□□□□□ -1.72
USP4-204ENST00000416417 PSPHP1O15172 72 aa4.29□□□□□ -1.72
USP4-204ENST00000416417 SPANXA2-OT1Q8N9U9 137 aa4.28□□□□□ -1.72
USP4-204ENST00000416417 A0A0D9SG42 100 aa4.27□□□□□ -1.73
USP4-204ENST00000416417 CDC42SE1Q9NRR8 79 aa4.25□□□□□ -1.73
USP4-204ENST00000416417 KRTAP19-5Q3LI72 72 aa4.22□□□□□ -1.73
USP4-204ENST00000416417 SPATA8Q6RVD6 105 aa4.22□□□□□ -1.73
USP4-204ENST00000416417 LCE1DQ5T752 114 aa4.21□□□□□ -1.74
USP4-204ENST00000416417 SPINT4Q6UDR6 99 aa4.2□□□□□ -1.74
USP4-204ENST00000416417 A8MU10 97 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms