RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 KRTAP13-3Q3SY46 172 aa5.32□□□□□ -1.56
SNHG3-201ENST00000413987 R4GN34 69 aa5.31□□□□□ -1.56
SNHG3-201ENST00000413987 ANAPC11Q9NYG5 84 aa5.3□□□□□ -1.56
SNHG3-201ENST00000413987 PRO2289Q9P1D8 64 aa5.29□□□□□ -1.56
SNHG3-201ENST00000413987 RYR1P21817 5038 aa5.29□□□□□ -1.56
SNHG3-201ENST00000413987 KRTAP15-1Q3LI76 137 aa5.28□□□□□ -1.56
SNHG3-201ENST00000413987 KRTAP17-1Q9BYP8 105 aa5.28□□□□□ -1.56
SNHG3-201ENST00000413987 IGKV2-30P06310 120 aa5.25□□□□□ -1.57
SNHG3-201ENST00000413987 MYCBP2O75592 4640 aa5.24□□□□□ -1.57
SNHG3-201ENST00000413987 SPINT4Q6UDR6 99 aa5.23□□□□□ -1.57
SNHG3-201ENST00000413987 LRP1Q07954 4544 aaKnown RBP5.23□□□□□ -1.57
SNHG3-201ENST00000413987 KRTAP10-4P60372 401 aaPredicted RBP5.21□□□□□ -1.58
SNHG3-201ENST00000413987 SPINK6Q6UWN8 80 aa5.21□□□□□ -1.58
SNHG3-201ENST00000413987 PKHD1L1Q86WI1 4243 aa5.18□□□□□ -1.58
SNHG3-201ENST00000413987 FLG2Q5D862 2391 aaPredicted RBP5.18□□□□□ -1.58
SNHG3-201ENST00000413987 Q5VSD8 79 aa5.17□□□□□ -1.58
SNHG3-201ENST00000413987 KRTAP1-4P0C5Y4 121 aa5.16□□□□□ -1.58
SNHG3-201ENST00000413987 SSBP3-AS1Q7Z2R9 100 aa5.15□□□□□ -1.58
SNHG3-201ENST00000413987 BIRC6Q9NR09 4857 aa5.14□□□□□ -1.59
SNHG3-201ENST00000413987 KRTAP13-2Q52LG2 175 aa5.14□□□□□ -1.59
SNHG3-201ENST00000413987 ABCA13Q86UQ4 5058 aa5.14□□□□□ -1.59
SNHG3-201ENST00000413987 KRTAP4-5Q9BYR2 181 aa5.13□□□□□ -1.59
SNHG3-201ENST00000413987 IGKV2D-30A0A075B6S6 120 aa5.12□□□□□ -1.59
SNHG3-201ENST00000413987 FAT3Q8TDW7 4589 aa5.11□□□□□ -1.59
SNHG3-201ENST00000413987 TNXBP22105 4242 aa5.11□□□□□ -1.59
SNHG3-201ENST00000413987 TPRXLQ17RH7 258 aa5.08□□□□□ -1.6
SNHG3-201ENST00000413987 HERC2O95714 4834 aa5.08□□□□□ -1.6
SNHG3-201ENST00000413987 LINC00304Q8N9R0 145 aa5.03□□□□□ -1.6
SNHG3-201ENST00000413987 PCLOQ9Y6V0 5065 aa5.03□□□□□ -1.6
SNHG3-201ENST00000413987 SPINK1P00995 79 aa5.02□□□□□ -1.61
SNHG3-201ENST00000413987 H0YAA0 97 aa5.01□□□□□ -1.61
SNHG3-201ENST00000413987 DMBT1Q9UGM3 2413 aaPredicted RBP5.01□□□□□ -1.61
SNHG3-201ENST00000413987 MT1HL1P0DM35 61 aa4.96□□□□□ -1.62
SNHG3-201ENST00000413987 KRTAP10-8P60410 259 aa4.96□□□□□ -1.62
SNHG3-201ENST00000413987 H1FX-AS1Q4G0G2 97 aa4.96□□□□□ -1.62
SNHG3-201ENST00000413987 KRTAP19-4Q3LI73 84 aa4.94□□□□□ -1.62
SNHG3-201ENST00000413987 HERC1Q15751 4861 aa4.92□□□□□ -1.62
SNHG3-201ENST00000413987 LPAP08519 4548 aa4.89□□□□□ -1.63
SNHG3-201ENST00000413987 C9orf92A6NGG3 77 aa4.85□□□□□ -1.63
SNHG3-201ENST00000413987 RPS29P62273 56 aaKnown RBP4.84□□□□□ -1.63
SNHG3-201ENST00000413987 INE1O15225 51 aa4.82□□□□□ -1.64
SNHG3-201ENST00000413987 CRIPTQ9P021 101 aa4.82□□□□□ -1.64
SNHG3-201ENST00000413987 COX6B2Q6YFQ2 88 aa4.82□□□□□ -1.64
SNHG3-201ENST00000413987 LRP2P98164 4655 aa4.81□□□□□ -1.64
SNHG3-201ENST00000413987 RPL37P61927 97 aaKnown RBP4.79□□□□□ -1.64
SNHG3-201ENST00000413987 HMCN2Q8NDA2 5059 aa4.73□□□□□ -1.65
SNHG3-201ENST00000413987 MUC2Q02817 5179 aa4.7□□□□□ -1.66
SNHG3-201ENST00000413987 XP32Q5T750 250 aa4.69□□□□□ -1.66
SNHG3-201ENST00000413987 KRTAP10-6P60371 365 aaPredicted RBP4.66□□□□□ -1.66
SNHG3-201ENST00000413987 UBR4Q5T4S7 5183 aa4.65□□□□□ -1.67
SNHG3-201ENST00000413987 LCE5AQ5TCM9 118 aa4.65□□□□□ -1.67
SNHG3-201ENST00000413987 A0A0D9SG42 100 aa4.64□□□□□ -1.67
SNHG3-201ENST00000413987 PLAC4Q8WY50 150 aa4.62□□□□□ -1.67
SNHG3-201ENST00000413987 KRTAP13-4Q3LI77 160 aa4.62□□□□□ -1.67
SNHG3-201ENST00000413987 C10orf95Q9H7T3 257 aa4.62□□□□□ -1.67
SNHG3-201ENST00000413987 RNF213Q63HN8 5207 aa4.61□□□□□ -1.67
SNHG3-201ENST00000413987 S4R3F8 94 aa4.6□□□□□ -1.67
SNHG3-201ENST00000413987 MUC17Q685J3 4493 aa4.54□□□□□ -1.68
SNHG3-201ENST00000413987 KRTAP4-1Q9BYQ7 146 aa4.53□□□□□ -1.68
SNHG3-201ENST00000413987 KRTAP12-2P59991 146 aa4.52□□□□□ -1.69
SNHG3-201ENST00000413987 KRTAP12-1P59990 96 aa4.5□□□□□ -1.69
SNHG3-201ENST00000413987 PP632Q6XCG6 107 aa4.49□□□□□ -1.69
SNHG3-201ENST00000413987 M0QZ58 72 aa4.47□□□□□ -1.69
SNHG3-201ENST00000413987 FAT4Q6V0I7 4981 aa4.47□□□□□ -1.69
SNHG3-201ENST00000413987 KRTAP9-4Q9BYQ2 154 aa4.45□□□□□ -1.7
SNHG3-201ENST00000413987 KRTAP2-2Q9BYT5 123 aa4.36□□□□□ -1.71
SNHG3-201ENST00000413987 KRTAP19-2Q3LHN2 52 aa4.34□□□□□ -1.72
SNHG3-201ENST00000413987 FLGP20930 4061 aaPredicted RBP4.33□□□□□ -1.72
SNHG3-201ENST00000413987 KRTAP9-9Q9BYP9 154 aa4.21□□□□□ -1.74
SNHG3-201ENST00000413987 MT3P25713 68 aa4.19□□□□□ -1.74
SNHG3-201ENST00000413987 MT1HP80294 61 aa4.19□□□□□ -1.74
SNHG3-201ENST00000413987 M0R2T5 61 aa4.16□□□□□ -1.74
SNHG3-201ENST00000413987 KRTAP9-6A0A140TA67 174 aa4.14□□□□□ -1.75
SNHG3-201ENST00000413987 KRTAP9-7A8MTY7 169 aa4.14□□□□□ -1.75
SNHG3-201ENST00000413987 LCE1FQ5T754 118 aa4.11□□□□□ -1.75
SNHG3-201ENST00000413987 LCE1AQ5T7P2 110 aa4.06□□□□□ -1.76
SNHG3-201ENST00000413987 SPRR5A0A1B0GTR4 108 aa4.03□□□□□ -1.76
SNHG3-201ENST00000413987 KRTAP9-8Q9BYQ0 159 aa4.02□□□□□ -1.77
SNHG3-201ENST00000413987 MT1FP04733 61 aa4.01□□□□□ -1.77
SNHG3-201ENST00000413987 MT2AP02795 61 aa4.01□□□□□ -1.77
SNHG3-201ENST00000413987 LCE4AQ5TA78 99 aa4.01□□□□□ -1.77
SNHG3-201ENST00000413987 TNP1P09430 55 aa3.98□□□□□ -1.77
SNHG3-201ENST00000413987 KRTAP10-10P60014 251 aa3.97□□□□□ -1.77
SNHG3-201ENST00000413987 USH2AO75445 5202 aa3.93□□□□□ -1.78
SNHG3-201ENST00000413987 KRTAP19-1Q8IUB9 90 aa3.89□□□□□ -1.79
SNHG3-201ENST00000413987 FSIP2Q5CZC0 6907 aa3.89□□□□□ -1.79
SNHG3-201ENST00000413987 KRTAP9-3Q9BYQ3 159 aa3.87□□□□□ -1.79
SNHG3-201ENST00000413987 SPRR2GQ9BYE4 73 aa3.83□□□□□ -1.8
SNHG3-201ENST00000413987 LCE3CQ5T5A8 94 aa3.78□□□□□ -1.8
SNHG3-201ENST00000413987 MT1BP07438 61 aa3.75□□□□□ -1.81
SNHG3-201ENST00000413987 SSPOA2VEC9 5147 aa3.74□□□□□ -1.81
SNHG3-201ENST00000413987 KRTAP19-8Q3LI54 63 aa3.73□□□□□ -1.81
SNHG3-201ENST00000413987 LCE1EQ5T753 118 aa3.67□□□□□ -1.82
SNHG3-201ENST00000413987 LCE3AQ5TA76 89 aa3.66□□□□□ -1.82
SNHG3-201ENST00000413987 KRTAP10-12P60413 245 aa3.65□□□□□ -1.83
SNHG3-201ENST00000413987 KRTAP9-2Q9BYQ4 174 aa3.63□□□□□ -1.83
SNHG3-201ENST00000413987 MT1XP80297 61 aa3.63□□□□□ -1.83
SNHG3-201ENST00000413987 KRTAP10-5P60370 271 aa3.62□□□□□ -1.83
SNHG3-201ENST00000413987 KRTAP8-1Q8IUC2 63 aa3.62□□□□□ -1.83
SNHG3-201ENST00000413987 KMT2DO14686 5537 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms