RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 IGF2RP11717 2491 aa0.95□□□□□ -2.26
BRCA1-204ENST00000412061 RIF1Q5UIP0 2472 aaKnown RBP0.95□□□□□ -2.26
BRCA1-204ENST00000412061 M0QZ58 72 aa0.94□□□□□ -2.26
BRCA1-204ENST00000412061 UBR5O95071 2799 aaPredicted RBP0.94□□□□□ -2.26
BRCA1-204ENST00000412061 NIPBLQ6KC79 2804 aaeCLIP0.94□□□□□ -2.26
BRCA1-204ENST00000412061 TLN2Q9Y4G6 2542 aa0.94□□□□□ -2.26
BRCA1-204ENST00000412061 PTPN13Q12923 2485 aa0.94□□□□□ -2.26
BRCA1-204ENST00000412061 CEP295Q9C0D2 2601 aa0.93□□□□□ -2.26
BRCA1-204ENST00000412061 ZFYVE26Q68DK2 2539 aa0.93□□□□□ -2.26
BRCA1-204ENST00000412061 TLN1Q9Y490 2541 aaKnown RBP0.93□□□□□ -2.26
BRCA1-204ENST00000412061 TENM4Q6N022 2769 aa0.93□□□□□ -2.26
BRCA1-204ENST00000412061 NOTCH1P46531 2555 aa0.93□□□□□ -2.26
BRCA1-204ENST00000412061 MUC3AQ02505 3323 aa0.93□□□□□ -2.26
BRCA1-204ENST00000412061 HIVEP3Q5T1R4 2406 aa0.93□□□□□ -2.26
BRCA1-204ENST00000412061 VWFP04275 2813 aa0.93□□□□□ -2.26
BRCA1-204ENST00000412061 SMR3AQ99954 134 aa0.92□□□□□ -2.26
BRCA1-204ENST00000412061 TRRAPQ9Y4A5 3859 aa0.92□□□□□ -2.26
BRCA1-204ENST00000412061 CUBNO60494 3623 aa0.92□□□□□ -2.26
BRCA1-204ENST00000412061 MYO9AB2RTY4 2548 aa0.92□□□□□ -2.26
BRCA1-204ENST00000412061 VPS13DQ5THJ4 4388 aa0.92□□□□□ -2.26
BRCA1-204ENST00000412061 ANK2Q01484 3957 aa0.92□□□□□ -2.26
BRCA1-204ENST00000412061 DNAH8Q96JB1 4490 aa0.91□□□□□ -2.26
BRCA1-204ENST00000412061 USP9XQ93008 2570 aaPredicted RBP0.91□□□□□ -2.26
BRCA1-204ENST00000412061 PDZD2O15018 2839 aa0.91□□□□□ -2.26
BRCA1-204ENST00000412061 ZNF469Q96JG9 3925 aaPredicted RBP0.91□□□□□ -2.26
BRCA1-204ENST00000412061 SONP18583 2426 aaKnown RBP0.91□□□□□ -2.26
BRCA1-204ENST00000412061 CFAP46Q8IYW2 2715 aa0.9□□□□□ -2.26
BRCA1-204ENST00000412061 LYSTQ99698 3801 aa0.9□□□□□ -2.26
BRCA1-204ENST00000412061 ZANQ9Y493 2812 aa0.9□□□□□ -2.26
BRCA1-204ENST00000412061 USP9YO00507 2555 aaPredicted RBP0.9□□□□□ -2.27
BRCA1-204ENST00000412061 GCN1Q92616 2671 aaKnown RBP0.9□□□□□ -2.27
BRCA1-204ENST00000412061 CSMD3Q7Z407 3707 aa0.9□□□□□ -2.27
BRCA1-204ENST00000412061 UNC79Q9P2D8 2635 aa0.89□□□□□ -2.27
BRCA1-204ENST00000412061 NAV2Q8IVL1 2488 aa0.89□□□□□ -2.27
BRCA1-204ENST00000412061 DNAH3Q8TD57 4116 aa0.89□□□□□ -2.27
BRCA1-204ENST00000412061 DOPEY1Q5JWR5 2465 aa0.89□□□□□ -2.27
BRCA1-204ENST00000412061 PKD1L1Q8TDX9 2849 aa0.89□□□□□ -2.27
BRCA1-204ENST00000412061 MTORP42345 2549 aa0.88□□□□□ -2.27
BRCA1-204ENST00000412061 DNAH17Q9UFH2 4485 aa0.88□□□□□ -2.27
BRCA1-204ENST00000412061 HIVEP1P15822 2718 aa0.88□□□□□ -2.27
BRCA1-204ENST00000412061 EPG5Q9HCE0 2579 aa0.88□□□□□ -2.27
BRCA1-204ENST00000412061 COL7A1Q02388 2944 aa0.88□□□□□ -2.27
BRCA1-204ENST00000412061 DYNC2H1Q8NCM8 4307 aaKnown RBP0.88□□□□□ -2.27
BRCA1-204ENST00000412061 HECTD1Q9ULT8 2610 aa0.87□□□□□ -2.27
BRCA1-204ENST00000412061 CENPEQ02224 2701 aa0.87□□□□□ -2.27
BRCA1-204ENST00000412061 DNAH10Q8IVF4 4471 aa0.87□□□□□ -2.27
BRCA1-204ENST00000412061 DNAH9Q9NYC9 4486 aa0.87□□□□□ -2.27
BRCA1-204ENST00000412061 CHD8Q9HCK8 2581 aa0.87□□□□□ -2.27
BRCA1-204ENST00000412061 ACANP16112 2415 aa0.87□□□□□ -2.27
BRCA1-204ENST00000412061 PKD1L2Q7Z442 2459 aa0.86□□□□□ -2.27
BRCA1-204ENST00000412061 DNAH2Q9P225 4427 aa0.86□□□□□ -2.27
BRCA1-204ENST00000412061 TGP01266 2768 aa0.86□□□□□ -2.27
BRCA1-204ENST00000412061 SETD2Q9BYW2 2564 aaPredicted RBP0.86□□□□□ -2.27
BRCA1-204ENST00000412061 AHNAK2Q8IVF2 5795 aa0.86□□□□□ -2.27
BRCA1-204ENST00000412061 COL6A5A8TX70 2615 aa0.86□□□□□ -2.27
BRCA1-204ENST00000412061 DNAH6Q9C0G6 4158 aa0.85□□□□□ -2.27
BRCA1-204ENST00000412061 DNAH7Q8WXX0 4024 aa0.85□□□□□ -2.27
BRCA1-204ENST00000412061 HECTD4Q9Y4D8 3996 aa0.85□□□□□ -2.27
BRCA1-204ENST00000412061 DNAH11Q96DT5 4516 aa0.85□□□□□ -2.27
BRCA1-204ENST00000412061 ACACBO00763 2458 aa0.85□□□□□ -2.27
BRCA1-204ENST00000412061 C9orf92A6NGG3 77 aa0.85□□□□□ -2.27
BRCA1-204ENST00000412061 NBEAL1Q6ZS30 2694 aa0.84□□□□□ -2.27
BRCA1-204ENST00000412061 PRKDCP78527 4128 aaKnown RBP0.84□□□□□ -2.27
BRCA1-204ENST00000412061 HUWE1Q7Z6Z7 4374 aaKnown RBP0.84□□□□□ -2.27
BRCA1-204ENST00000412061 LRRK2Q5S007 2527 aa0.84□□□□□ -2.27
BRCA1-204ENST00000412061 MYCBP2O75592 4640 aa0.84□□□□□ -2.28
BRCA1-204ENST00000412061 CCDC168Q8NDH2 2452 aa0.84□□□□□ -2.28
BRCA1-204ENST00000412061 CMYA5Q8N3K9 4069 aa0.84□□□□□ -2.28
BRCA1-204ENST00000412061 ITPR3Q14573 2671 aa0.83□□□□□ -2.28
BRCA1-204ENST00000412061 KMT2AQ03164 3969 aa0.83□□□□□ -2.28
BRCA1-204ENST00000412061 MYO18BQ8IUG5 2567 aa0.83□□□□□ -2.28
BRCA1-204ENST00000412061 ITPR2Q14571 2701 aa0.83□□□□□ -2.28
BRCA1-204ENST00000412061 TENM3Q9P273 2699 aa0.83□□□□□ -2.28
BRCA1-204ENST00000412061 DMBT1Q9UGM3 2413 aaPredicted RBP0.82□□□□□ -2.28
BRCA1-204ENST00000412061 FLNCQ14315 2725 aa0.82□□□□□ -2.28
BRCA1-204ENST00000412061 SACSQ9NZJ4 4579 aa0.82□□□□□ -2.28
BRCA1-204ENST00000412061 TEP1Q99973 2627 aaKnown RBP0.82□□□□□ -2.28
BRCA1-204ENST00000412061 FASNP49327 2511 aaKnown RBP0.82□□□□□ -2.28
BRCA1-204ENST00000412061 TNP1P09430 55 aa0.82□□□□□ -2.28
BRCA1-204ENST00000412061 LRP1BQ9NZR2 4599 aa0.82□□□□□ -2.28
BRCA1-204ENST00000412061 MAST4O15021 2626 aa0.81□□□□□ -2.28
BRCA1-204ENST00000412061 STAB2Q8WWQ8 2551 aa0.8□□□□□ -2.28
BRCA1-204ENST00000412061 FLNBO75369 2602 aaKnown RBP0.8□□□□□ -2.28
BRCA1-204ENST00000412061 FLNAP21333 2647 aaKnown RBP0.8□□□□□ -2.28
BRCA1-204ENST00000412061 IGSF10Q6WRI0 2623 aa0.79□□□□□ -2.28
BRCA1-204ENST00000412061 CACNA1AO00555 2505 aa0.79□□□□□ -2.28
BRCA1-204ENST00000412061 LRP1Q07954 4544 aaKnown RBP0.79□□□□□ -2.28
BRCA1-204ENST00000412061 PKD1P98161 4303 aa0.79□□□□□ -2.28
BRCA1-204ENST00000412061 MUC16Q8WXI7 14507 aa0.79□□□□□ -2.28
BRCA1-204ENST00000412061 ATRQ13535 2644 aa0.79□□□□□ -2.28
BRCA1-204ENST00000412061 APOBP04114 4563 aaKnown RBP0.79□□□□□ -2.28
BRCA1-204ENST00000412061 PLECQ15149 4684 aaKnown RBP0.79□□□□□ -2.28
BRCA1-204ENST00000412061 NSD1Q96L73 2696 aaPredicted RBP0.78□□□□□ -2.28
BRCA1-204ENST00000412061 VPS13BQ7Z7G8 4022 aa0.78□□□□□ -2.28
BRCA1-204ENST00000412061 PKHD1L1Q86WI1 4243 aa0.78□□□□□ -2.28
BRCA1-204ENST00000412061 PKHD1P08F94 4074 aa0.77□□□□□ -2.29
BRCA1-204ENST00000412061 FAT2Q9NYQ8 4349 aa0.77□□□□□ -2.29
BRCA1-204ENST00000412061 KRTAP5-10Q6L8G5 202 aa0.76□□□□□ -2.29
BRCA1-204ENST00000412061 KRTAP8-1Q8IUC2 63 aa0.76□□□□□ -2.29
BRCA1-204ENST00000412061 STAB1Q9NY15 2570 aa0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms